Gene Information

Name : ECH74115_5069 (ECH74115_5069)
Accession : YP_002273173.1
Strain : Escherichia coli EC4115
Genome accession: NC_011353
Putative virulence/resistance : Virulence
Product : type III secretion outer membrane pore, YscC/HrcC family
Function : -
COG functional category : N : Cell motility
COG ID : COG1450
EC number : -
Position : 4714480 - 4716018 bp
Length : 1539 bp
Strand : +
Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516

DNA sequence :
ATGAAAAAAATAAGTTTTTTTATTTTTACAGCACTATTTTGCTGCAGTGCACAAGCTGCCCCGTCCTCTCTGGAAAAAAG
ATTAGGCAAGAGCGAATATTTTATTATTACTAAAAGTTCTCCAGTACGTGCAATCCTTAATGACTTTGCTGCTAACTACA
GCATTCCTGTTTTCATCAGTAGTTCCGTGAATGATGATTTCTCTGGCGAAATAAAAAATGAAAAACCTGTAAAAGTACTG
GAAAAACTGTCCAAACTATATCATCTCACATGGTATTATGATGAGAACATCTTGTATATTTATAAAACAAATGAAATATC
AAGAAGTATAATTACACCAACATATCTGGATATTGACTCACTGCTAAAATATCTGAGTGATACAATCTCAGTAAACAAAA
ACTCTTGCAATGTGAGAAAAATTACGACATTTAACTCGATTGAAGTTCGGGGTGTTCCTGAATGTATAAAATATATTACA
TCTTTATCAGAAAGTCTTGATAAAGAGGCACAGTCTAAAGCCAAAAATAAAGATGTTGTTAAGGTCTTTAAACTGAACTA
TGCGTCAGCGACAGATATAACATACAAATACCGTGACCAAAATGTTGTCGTCCCAGGTGTTGTCTCCATTCTGAAGACAA
TGGCAAGTAATGGTTCACTTCCCAGTACCGGTAAAGGTGCCGTCGAGCGAAGCGGTAACCTGTTTGATAACAGTGTAACG
ATTTCCGCTGATCCACGTCTTAATGCAGTTGTTGTAAAAGACCGCGAAATAACGATGGATATCTATCAGCAATTAATTTC
TGAGCTTGATATTGAACAAAGGCAAATTGAAATTTCTGTCTCAATTATTGATGTTGATGCAAACGATCTTCAGCAGCTCG
GCGTAAACTGGTCCGGTACGTTAAATGCAGGACAAGGTACGATTGCCTTTAATAGCTCTACCGCACAGGCTAATATCAGC
TCTTCTGTGATAAGTAATGCCAGTAATTTTATGATTAGGGTGAATGCGTTACAACAGAACTCGAAAGCTAAAATACTCTC
TCAGCCTTCAATTATAACCTTAAATAATATGCAGGCGATTCTTGATAAAAACGTAACGTTTTATACAAAAGTCTCCGGAG
AAAAGGTGGCGTCTCTGGAAAGTATTACAAGCGGAACATTGCTGAGAGTGACACCACGTATACTTGATGACAGCTCGAAT
AGCCTTACCGGAAAACGTCGGGAACGAGTTCGTTTGTTACTTGATATTCAGGATGGCAATCAATCGACTAACCAAAGCAA
TGCTCAGGATGCCAGCAGCACCTTACCTGAAGTACAAAATTCAGAAATGACAACAGAAGCGACATTAAGTGCAGGAGAAA
GTTTATTACTTGGCGGATTTATCCAAGATAAAGAAAGTTCAAGTAAAGATGGTATACCGCTGTTAAGCGACATTCCTGTT
ATTGGTAGTTTATTCTCCAGTACGGTAAAACAAAAACATAGTGTTGTTCGACTCTTTTTAATTAAAGCAACCCCGATAAA
ATCTGCATCTAGCGAATAA

Protein sequence :
MKKISFFIFTALFCCSAQAAPSSLEKRLGKSEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVL
EKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYIT
SLSESLDKEAQSKAKNKDVVKVFKLNYASATDITYKYRDQNVVVPGVVSILKTMASNGSLPSTGKGAVERSGNLFDNSVT
ISADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANIS
SSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKVSGEKVASLESITSGTLLRVTPRILDDSSN
SLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPV
IGSLFSSTVKQKHSVVRLFLIKATPIKSASSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escC NP_290275.1 hypothetical protein Virulence LEE Protein 0.0 100
ECs4575 NP_312602.1 EscC Virulence LEE Protein 0.0 100
escC AAC31520.1 L0041 Virulence LEE Protein 0.0 100
escC ACU09465.1 type III secretion outer membrane pore YscC/HrcC family Virulence LEE Protein 0.0 100
escC YP_003236095.1 T3SS structure protein EscC Virulence LEE Protein 0.0 99
escC AAC38377.1 EscC Virulence LEE Protein 0.0 99
escC YP_003223482.1 T3SS structure protein EscC Virulence LEE Protein 0.0 97
escC AAK26708.1 EscC Virulence LEE Protein 0.0 97
escC YP_003232146.1 T3SS structure protein EscC Virulence LEE Protein 0.0 97
escC AAL57535.1 EscC Virulence LEE Protein 0.0 97
escC CAC81855.1 EscC protein Virulence LEE II Protein 0.0 97
escC CAI43881.1 EscC protein Virulence LEE Protein 0.0 97
unnamed AAL06362.1 EscC Virulence LEE Protein 0.0 96
escC AFO66299.1 putative type III complex subunit Virulence SESS LEE Protein 0.0 80
escC AFO66408.1 putative type III complex subunit Virulence SESS LEE Protein 0.0 80
YPO0257 YP_002345337.1 type III secretion protein Virulence Not named Protein 8e-111 49
spiA NP_456134.1 putative outer membrane secretory protein Virulence SPI-2 Protein 6e-91 44
spiA NP_805065.1 outer membrane secretory protein Virulence SPI-2 Protein 6e-91 44
spiA AAC44301.1 SpiA Virulence SPI-2 Protein 2e-91 44
ssaC YP_216402.1 secretion system apparatus protein SsaC Virulence SPI-2 Protein 5e-91 44
ssaC NP_460359.1 outer membrane secretin precursor Virulence SPI-2 Protein 3e-91 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECH74115_5069 YP_002273173.1 type III secretion outer membrane pore, YscC/HrcC family VFG0819 Protein 0.0 100
ECH74115_5069 YP_002273173.1 type III secretion outer membrane pore, YscC/HrcC family VFG0723 Protein 0.0 99
ECH74115_5069 YP_002273173.1 type III secretion outer membrane pore, YscC/HrcC family VFG0495 Protein 1e-91 44