Gene Information

Name : ylcA (SFV_0504)
Accession : YP_688070.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional activator CusR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 530213 - 530896 bp
Length : 684 bp
Strand : -
Note : response regulator in two-component regulatory system with CusS; regulates the copper efflux system

DNA sequence :
ATGAAACTGTTGATTGTCGAAGATGAAAAGAAAACCGGAGAATACTTGACCAAAGGGTTAACCGAAGCCGGTTTTGTGGT
CGATTTGGCCGACAACGGGCTGAATGGCTACCATCTGGCGATGACCGGTGATTATGACCTGATAATCCTCGATATTATGC
TGCCAGACGTGAACGGCTGGGATATCGTGCGCATGTTGCGCTCCGCCAATAAAGGGATGCCGATTCTGTTGCTTACCGCG
CTTGGCACCATTGAACATCGCGTCAAGGGGCTGGAGTTGGGGGCAGATGACTACCTGGTGAAACCGTTCGCTTTTGCTGA
ACTGCTGGCGCGGGTGCGCACTCTCCTGCAGCGCGGGGCGGCGGTGATTATCGAAAGTCAGTTTCAGGTTGCCGATCTGA
TGGTCGATCTCGTCAGCCGCAAAGTCACCCGCAGCGGCACGCGCATCACTCTGACCAGTAAAGAATTTACTCTGCTGGAG
TTTTTTCTCCGCCATCAGGGCGAAGTGCTGCCCCGCTCGCTTATCGCCTCGCAGGTATGGGACATGAATTTCGACAGCGA
CACTAACGCCATTGATGTGGCGGTGAAGCGGCTACGCGGCAAAATCGACAACGACTTTGAGCCGAAGCTGATTCAAACCG
TGCGCGGCGTGGGTTACATGCTTGAGGTGCCGGATGGTCAGTAA

Protein sequence :
MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA
LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLE
FFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-56 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-55 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ylcA YP_688070.1 DNA-binding transcriptional activator CusR BAC0111 Protein 1e-103 99
ylcA YP_688070.1 DNA-binding transcriptional activator CusR BAC0347 Protein 6e-87 82
ylcA YP_688070.1 DNA-binding transcriptional activator CusR BAC0083 Protein 3e-70 61
ylcA YP_688070.1 DNA-binding transcriptional activator CusR BAC0638 Protein 6e-63 61
ylcA YP_688070.1 DNA-binding transcriptional activator CusR BAC0308 Protein 2e-63 60
ylcA YP_688070.1 DNA-binding transcriptional activator CusR BAC0197 Protein 2e-63 59
ylcA YP_688070.1 DNA-binding transcriptional activator CusR BAC0125 Protein 2e-63 56
ylcA YP_688070.1 DNA-binding transcriptional activator CusR AE000516.2.gene3505. Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ylcA YP_688070.1 DNA-binding transcriptional activator CusR VFG0596 Protein 3e-56 52
ylcA YP_688070.1 DNA-binding transcriptional activator CusR VFG1390 Protein 6e-43 43