Gene Information

Name : czcR3 (PFLCHA0_c50250)
Accession : YP_008002278.1
Strain : Pseudomonas fluorescens CHA0
Genome accession: NC_021237
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CzcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5631955 - 5632632 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence :

ATGCGCGTTCTGATTATCGAAGACGAAGAAAAAACGGCCGATTACCTGCACCGCGGGTTGACCGAGCAAGGCTACACCGT
CGACCTGGCCCGGGACGGCGTCGAAGGCCTGCACATGGCTCTGGAGGGCGACTATGCCGTGATAGTGCTGGATGTGATGC
TGCCCGGCCTGGATGGCTTTGGCGTATTGCGAGCACTGCGTGCGCGCAAGCAGACCCCGGTGATCATGCTCACCGCCCGC
GAACGCGTGGAAGACCGCATCAAGGGCCTGCGCGATGGCGCCGACGACTACCTGGGCAAGCCCTTCTCCTTCCTTGAACT
GGTGGCCCGCCTGCAAGCCCTGACCCGTCGCAGCGGTGGGCATGAGCCGGTGCAGATCAGCATCGCCGACCTGTGGATCG
ACCTGATCAGCCGCAAGGCCAGCCGTGCTGGCAGCCGCCTGGACCTGACCGCCAAGGAGTTTTCCCTGCTCAGCGTGCTG
GCCCGGCGCCAGGGCGAGATCCTGTCCAAGACCGCCATCGCGGAAATGGTCTGGGACATCAATTTCGACAGCGACGCGAA
TGTCGTCGAAGTGGCGATCAAGCGCCTGCGGGCCAAGCTCGACGGCCCCTTCGAACAGAAACTGCTGCACACCATCCGTG
GCATGGGCTATGTGCTGGAGAGCCGCGGTGCCGAGTAA

Protein sequence :

MRVLIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVLDVMLPGLDGFGVLRALRARKQTPVIMLTAR
ERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGHEPVQISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVL
ARRQGEILSKTAIAEMVWDINFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLESRGAE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	1e-56	56
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	4e-56	56

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
czcR3	YP_008002278.1	transcriptional activator protein CzcR	BAC0197	Protein	6e-60	58
czcR3	YP_008002278.1	transcriptional activator protein CzcR	BAC0125	Protein	1e-63	57
czcR3	YP_008002278.1	transcriptional activator protein CzcR	BAC0083	Protein	9e-58	55
czcR3	YP_008002278.1	transcriptional activator protein CzcR	BAC0638	Protein	3e-51	55
czcR3	YP_008002278.1	transcriptional activator protein CzcR	BAC0111	Protein	4e-59	52
czcR3	YP_008002278.1	transcriptional activator protein CzcR	BAC0308	Protein	4e-56	51
czcR3	YP_008002278.1	transcriptional activator protein CzcR	BAC0347	Protein	2e-52	50
czcR3	YP_008002278.1	transcriptional activator protein CzcR	HE999704.1.gene1528.	Protein	1e-31	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
czcR3	YP_008002278.1	transcriptional activator protein CzcR	VFG0596	Protein	5e-57	56
czcR3	YP_008002278.1	transcriptional activator protein CzcR	VFG1389	Protein	2e-38	47
czcR3	YP_008002278.1	transcriptional activator protein CzcR	VFG1386	Protein	3e-36	44
czcR3	YP_008002278.1	transcriptional activator protein CzcR	VFG1390	Protein	7e-41	42