Gene Information

Name : PPS_5258 (PPS_5258)
Accession : YP_004704665.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : two component heavy metal response transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5958594 - 5959259 bp
Length : 666 bp
Strand : -
Note : -

DNA sequence :
GTGGCCGAAGATGAGCCGAAAACCGGTGTCTACCTCCAGCAAGGTCTAACAGAAGCTGGCTTCACCGTTGACCGGGTGAT
GACAGGCACTGACGCCCTGCAACAGGCACAGAGCGAAGCGTATGACTTGCTGATCCTCGACGTGATGATGCCGGGGCTCG
ATGGCTGGGATGTCCTGCGCAAGATCCGTGCGGCGGGTCAGGATGTGCCGGTCCTTTTCTTGACGGCCCGAGACGGCGTA
GACGACCGCGTGAAAGGTTTGGAACTGGGCGCTGATGATTACCTGGTGAAGCCCTTTGCGTTCTCGGAGCTGCTGGCTCG
AGTTCGTACGTTGCTGCGCAGAGGCAACGGTGGTTCTGCTCAAACCACTATGAAGATGGCAGACCTTGAGGTGGACCTGC
TCAAGCGTCGAGCTACGCGAAACGGCAAGCGGATCGACCTTACTGCCAAGGAGTTTTCCCTGTTGGAGCTGCTCATGCGC
CGACGCGGCGAGGTGCTTCCCAAATCGCTGATCGCTTCTCAGGTGTGGGACATGAATTTCGACAGTGACACCAACGTGAT
CGAGGTCGCGATTCGCCGACTGCGGGCCAAGATTGATGACGACTTCGCGCCAAAGCTAATCCATACCGCCCGAGGCATGG
GCTACATGATGGATGTGCCCGAGTGA

Protein sequence :
MAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGWDVLRKIRAAGQDVPVLFLTARDGV
DDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGNGGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMR
RRGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMDVPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-55 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-54 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator BAC0083 Protein 1e-86 82
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator BAC0638 Protein 6e-80 82
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator BAC0197 Protein 3e-70 66
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator BAC0308 Protein 1e-67 62
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator BAC0111 Protein 5e-70 62
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator BAC0125 Protein 4e-66 61
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator BAC0347 Protein 1e-64 58
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator NC_002516.2.879194.p Protein 3e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator VFG0596 Protein 2e-55 57
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator VFG1390 Protein 6e-42 47
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator VFG1389 Protein 4e-40 46
PPS_5258 YP_004704665.1 two component heavy metal response transcriptional regulator VFG1386 Protein 6e-37 41