Gene Information

Name : ECO26_5253 (ECO26_5253)
Accession : YP_003232135.1
Strain : Escherichia coli 11368
Genome accession: NC_013361
Putative virulence/resistance : Virulence
Product : T3SS component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5334428 - 5334742 bp
Length : 315 bp
Strand : +
Note : Integrative element ECO26_IE08

DNA sequence : 
GTGAGCCAAACAAAAAATAGAGAACTGTTAGATAAAAAAATAAGATCAGAAATTGAGGTGATAAAAAAAATAATCGCCGA
ATTTGATGTCGTAAAAGAAAACGTTAATGCTTTAAGTGAAAAAGCAAAAACAGATCCTCAGGCTGCAGAAAAATTAAACA
AATTAATTGAGGGGTATACATATGGTGAAGAGCGAAAATTATATGATTCTGCCTTAAGTAAGATTGAAAAACTAATAGAG
ACAATGAGTCCTCCAAGATCTAAAAACCAATCAACAAAAAATCAACGGAATAAAAATAATAGAAAAATAGTATGA

Protein sequence : 
MSQTKNRELLDKKIRSEIEVIKKIIAEFDVVKENVNALSEKAKTDPQAAEKLNKLIEGYTYGEERKLYDSALSKIEKLIE
TMSPPRSKNQSTKNQRNKNNRKIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3636 YP_003223493.1 T3SS component Virulence LEE Protein 2e-41 100
ECO26_5253 YP_003232135.1 T3SS component Virulence LEE Protein 2e-41 100
unnamed AAC31531.1 L0052 Not tested LEE Protein 5e-38 90
ECs4586 NP_312613.1 hypothetical protein Not tested LEE Protein 7e-38 90
ECO111_3770 YP_003236106.1 T3SS component Virulence LEE Protein 7e-38 90
unnamed AAC38366.1 Orf3 Not tested LEE Protein 5e-38 90
Z5138 NP_290286.1 hypothetical protein Not tested LEE Protein 7e-38 90
unnamed ACU09476.1 conserved hypothetical protein Not tested LEE Protein 1e-37 89
unnamed AAL06351.1 unknown Not tested LEE Protein 7e-36 87
cesA AFO66338.1 hypothetical protein Not tested SESS LEE Protein 4e-15 44
cesA AFO66397.1 hypothetical protein; possible LEE-encoded type III secretion system factor Not tested SESS LEE Protein 4e-15 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO26_5253 YP_003232135.1 T3SS component VFG0830 Protein 2e-38 90
ECO26_5253 YP_003232135.1 T3SS component VFG0712 Protein 2e-38 90