Gene Information

Name : sepD (ECO26_5265)
Accession : YP_003232147.1
Strain : Escherichia coli 11368
Genome accession: NC_013361
Putative virulence/resistance : Virulence
Product : secretion switching protein SepD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5342600 - 5343055 bp
Length : 456 bp
Strand : -
Note : Integrative element ECO26_IE08

DNA sequence :
ATGAACAATAATAATGGCATTGTTAAGAATGATAGTGACTGGCTAACGGCTCTTGATTTTGTAAAAGATGTCAAAGGTTC
ACCAAAGCATCTTACTTTTCATATCTATCAAAAAAATGCCTTCTTACACGACTTTGGAAGTTACTGGGTTCTGTATATCG
AGCTTAATGGCGATTTTCGCCAGGTTCCAACAGATACCTTCATCAGACTCTGTAATATTCTGGCCGTTAGTAAAGAATAT
AAACAAATGGGCATTTTTCAATCTAATAAAAAATGGTATCTTTGCCAACTGTTTAATAAAGATAATAATCATCGCGCAAA
CATGTCAAAAGCAATAATGCAACACACACTCGCCTCTTTGCTTGACAAGCAATTTGATAAGTTAGAGCAAGCATCTACAT
CAGATACAACGATGCCTCCAACACATTTGTTTTCTGATATAGGACGAATTGTGTAA

Protein sequence :
MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFRQVPTDTFIRLCNILAVSKEY
KQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASLLDKQFDKLEQASTSDTTMPPTHLFSDIGRIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sepD AAL57536.1 SepD Virulence LEE Protein 2e-67 100
sepD YP_003232147.1 secretion switching protein SepD Not tested LEE Protein 2e-67 100
st18 CAC81856.1 ST18 protein Not tested LEE II Protein 2e-67 100
sepD CAI43880.1 SepD protein Virulence LEE Protein 2e-67 100
unnamed AAK26709.1 unknown Not tested LEE Protein 2e-67 100
sepD YP_003223481.1 secretion switching protein SepD Not tested LEE Protein 2e-67 100
sepD YP_003236094.1 secretion switching protein SepD Virulence LEE Protein 7e-63 92
unnamed AAC31519.1 L0040 Not tested LEE Protein 3e-62 91
Z5125 NP_290274.1 hypothetical protein Not tested LEE Protein 4e-62 91
sepD ACU09464.1 SepD protein Virulence LEE Protein 3e-62 91
ECs4574 NP_312601.1 SepD Virulence LEE Protein 4e-62 91
unnamed AAC38378.1 rOrf6 Not tested LEE Protein 6e-63 91
unnamed AAL06363.1 SepD Virulence LEE Protein 7e-61 86
sepD AFO66325.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 4e-46 59
sepD AFO66409.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 4e-46 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sepD YP_003232147.1 secretion switching protein SepD VFG0724 Protein 2e-63 91
sepD YP_003232147.1 secretion switching protein SepD VFG0818 Protein 1e-62 91