Gene Information

Name : rorf8 (ECO26_5267)
Accession : YP_003232149.1
Strain : Escherichia coli 11368
Genome accession: NC_013361
Putative virulence/resistance : Virulence
Product : T3SS component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5343635 - 5344063 bp
Length : 429 bp
Strand : -
Note : Integrative element ECO26_IE08

DNA sequence :
ATGGATGCATTATGCCATTACCTCTCTCATGAAAAGAGACTAACCGTAAATATGAACAATATTAATCAATCAGAAAATAT
TAATATTCATTTTAATAAAGTATCCCAAACAAATTTCGTTGATGACCATACCCCGTTAGCACCAACGCCCTCTGCGGCTG
GAGCGGCTCAGTTTCTTGATCAATTACTTCCTAAAACAGCTGGTGTATCTTCTCCAGAGCAAGTTTTAATTGAAGAAATT
AAAAAGAGACATCTTGCAACAATGAACACCGATCTCAGTTTCGATGCCCTATCTGCAGGTGGACTCTCGCCAGAAGATGT
GCTCACATTACAAAAGAATGTGCTCAACGCAAACGTCAATGTTGATGTCGTATCCAAGTTAGCAAGTCTTCTTTCAACAT
CGGTTACAAAACTGGTTTCAATGCAATAA

Protein sequence :
MDALCHYLSHEKRLTVNMNNINQSENINIHFNKVSQTNFVDDHTPLAPTPSAAGAAQFLDQLLPKTAGVSSPEQVLIEEI
KKRHLATMNTDLSFDALSAGGLSPEDVLTLQKNVLNANVNVDVVSKLASLLSTSVTKLVSMQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK26711.1 unknown Not tested LEE Protein 6e-42 100
unnamed AAL57538.1 unknown Not tested LEE Protein 6e-42 100
st20 CAC81858.1 ST20 protein Not tested LEE II Protein 6e-42 100
unnamed CAI43878.1 hypothetical protein Not tested LEE Protein 6e-42 100
ECO103_3622 YP_003223479.1 T3SS component Virulence LEE Protein 8e-42 100
rorf8 YP_003232149.1 T3SS component Virulence LEE Protein 8e-42 100
unnamed AAC38380.1 rOrf8 Not tested LEE Protein 1e-36 92
rorf8 YP_003236092.1 chaperone Rorf8 Not tested LEE Protein 2e-36 92
unnamed AAC31517.1 L0038 Not tested LEE Protein 4e-30 88
unnamed ACU09462.1 type III secretion apparatus domain protein YscI/HrpB Virulence LEE Protein 4e-30 88
Z5123 NP_290272.1 hypothetical protein Not tested LEE Protein 5e-30 88
ECs4572 NP_312599.1 hypothetical protein Not tested LEE Protein 5e-30 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rorf8 YP_003232149.1 T3SS component VFG0726 Protein 6e-37 92
rorf8 YP_003232149.1 T3SS component VFG0816 Protein 2e-30 88