Gene Information

Name : sepQ (ECO26_5274)
Accession : YP_003232156.1
Strain : Escherichia coli 11368
Genome accession: NC_013361
Putative virulence/resistance : Virulence
Product : T3SS structure protein SepQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 5349035 - 5349952 bp
Length : 918 bp
Strand : +
Note : Integrative element ECO26_IE08

DNA sequence : 
ATGAACCTATTGAATTCTCAATTGAATATGAAAATTAATGATTTTTACTTGCCATTGTTGTCAGTCATAGGAACCGGTCG
CCTCTATATTACGCCTGAAGGGCATGCTTGCCATGCATATTTTCGCGAAGTCAGCGGTAATGGTATCCGCTTCACGTTAA
CATGCTCAGGCTATGAGGGGCGTTTTTGGATATCAGAAGAACAGTTCATTCAGTGGTGCCAGGAGTTATTCCCGTATAGC
GAAAGCCGGCTGATACCGGAAGATATGATAAAACTCATGATCTTATGGGTAATGCAGACTGCTTTACCAGAAGGTGATGT
GTCTGTTGATGATGTTCAATTTACGATGCTAAATAAAGATGTTTATCCGGTAATAGAAAATAATAATGGAGAAAACAGAC
TTAATGTAATTATACTCGAAATAACGGTACAGAGTTTACAATATCTAATTAATGAAAATTGGCAATTTGTTCCACATTCT
AATACCATTTTCTTTGATGGATATATTGCTCCTGGGTGGACTGATTACCCGGTTACAGAGCTGACTGTTGGTGATAGTTT
AAGGCTCTATCATGTTGATGACAGCAAAGAAAGAGAGTGTTGGCTTGTTATTAATAACCCTTTAGCAACCGTAAAACTTT
GTGATAATAATTTATTTATTGCGGATGTCCAGGCTGCAGATTTGTTATGTACTATCAGCAATGAGGCTGTAATGGATCGC
ATTTATTGTGTTATTGGAACAATTCATGTTGATATACATATGTTGCGCAATGCCAAAAAAGATGATATTATCGATTCAAC
TGGATATCATCTTTTTGGTGGGTGCCGGTTAATACGCAATAATACGACTATAGCATACGGAAGCATTGTAAAAATCAACG
AAGATTTTTATTTTACTGTTAGTTTAGTATGTGATTAA

Protein sequence : 
MNLLNSQLNMKINDFYLPLLSVIGTGRLYITPEGHACHAYFREVSGNGIRFTLTCSGYEGRFWISEEQFIQWCQELFPYS
ESRLIPEDMIKLMILWVMQTALPEGDVSVDDVQFTMLNKDVYPVIENNNGENRLNVIILEITVQSLQYLINENWQFVPHS
NTIFFDGYIAPGWTDYPVTELTVGDSLRLYHVDDSKERECWLVINNPLATVKLCDNNLFIADVQAADLLCTISNEAVMDR
IYCVIGTIHVDIHMLRNAKKDDIIDSTGYHLFGGCRLIRNNTTIAYGSIVKINEDFYFTVSLVCD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sepQ YP_003232156.1 T3SS structure protein SepQ Virulence LEE Protein 3e-141 100
sepQ CAC81865.1 SepQ protein Not tested LEE II Protein 2e-141 100
sepQ AAK26718.1 SepQ Virulence LEE Protein 5e-140 99
sepQ YP_003223472.1 T3SS structure protein SepQ Virulence LEE Protein 5e-141 99
sepQ AAL57545.1 SepQ Virulence LEE Protein 5e-140 99
sepQ CAI43871.1 SepQ protein Virulence LEE Protein 4e-141 99
sepQ AAC38386.1 SepQ Virulence LEE Protein 6e-130 89
sepQ YP_003236085.1 T3SS structure protein SepQ Virulence LEE Protein 4e-129 89
sepQ AAC31510.1 L0031 Virulence LEE Protein 3e-128 87
sepQ NP_290265.1 hypothetical protein Virulence LEE Protein 4e-128 87
sepQ ACU09455.1 SepQ protein Virulence LEE Protein 3e-128 87
ECs4565 NP_312592.1 SepQ Virulence LEE Protein 4e-128 87
unnamed AAL06372.1 SepQ Virulence LEE Protein 2e-118 80
sepQ AFO66309.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-60 41
sepQ AFO66418.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sepQ YP_003232156.1 T3SS structure protein SepQ VFG0733 Protein 4e-130 89
sepQ YP_003232156.1 T3SS structure protein SepQ VFG0809 Protein 2e-128 87