Gene Information

Name : ylcA (P12B_c0554)
Accession : YP_006167603.1
Strain : Escherichia coli P12b
Genome accession: NC_017663
Putative virulence/resistance : Virulence
Product : Transcriptional regulatory protein cusR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 593008 - 593691 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence :
ATGAAACTGCTGATTGTCGAAGATGAAAAGAAAACCGGAGAATACTTGACCAAAGGGTTAACCGAAGCCGGTTTTGTGGT
CGATTTGGCCGACAACGGGCTGAATGGCTACCATCTGGCGATGACCGGAGATTATGACCTGATAATCCTCGATATTATGC
TGCCGGACGTGAACGGCTGGGATATCGTGCGCATGTTGCGCTCCGCCAATAAAGGGATGCCGATTCTGTTGCTTACCGCG
CTTGGCACCATTGAACATCGCGTCAAGGGGCTGGAGTTGGGGGCCGATGACTATCTGGTGAAGCCGTTCGCTTTTGCTGA
ACTGCTGGCGCGGGTGCGCACTCTCCTGCGGCGCGGGGCGGCGGTGATTATCGAAAGTCAGTTTCAGGTTGCCGATCTGA
TGGTCGATCTCGTCAGCCGCAAAGTCACCCGCAGCGGCACGCGCATCACTCTGACCAGTAAAGAATTTACTCTGCTGGAG
TTTTTCCTTCGCCATCAGGGCGAAGTGCTGCCCCGCTCGCTTATCGCCTCGCAGGTATGGGACATGAATTTCGACAGCGA
CACTAACGCCATTGATGTGGCGGTGAAGCGGCTACGCGGCAAAATCGACAACGACTTTGAGCCGAAGCTGATTCAAACCG
TGCGCGGCGTGGGTTACATGCTTGAGGTGCCGGATGGTCAGTAA

Protein sequence :
MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA
LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLE
FFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-56 53
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-56 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ylcA YP_006167603.1 Transcriptional regulatory protein cusR BAC0111 Protein 6e-104 100
ylcA YP_006167603.1 Transcriptional regulatory protein cusR BAC0347 Protein 2e-87 83
ylcA YP_006167603.1 Transcriptional regulatory protein cusR BAC0083 Protein 1e-70 62
ylcA YP_006167603.1 Transcriptional regulatory protein cusR BAC0638 Protein 2e-63 62
ylcA YP_006167603.1 Transcriptional regulatory protein cusR BAC0308 Protein 1e-63 60
ylcA YP_006167603.1 Transcriptional regulatory protein cusR BAC0197 Protein 9e-64 59
ylcA YP_006167603.1 Transcriptional regulatory protein cusR BAC0125 Protein 7e-64 56
ylcA YP_006167603.1 Transcriptional regulatory protein cusR AE000516.2.gene3505. Protein 2e-27 42
ylcA YP_006167603.1 Transcriptional regulatory protein cusR NC_007793.3914065.p0 Protein 2e-34 41
ylcA YP_006167603.1 Transcriptional regulatory protein cusR NC_007622.3794948.p0 Protein 2e-34 41
ylcA YP_006167603.1 Transcriptional regulatory protein cusR NC_002951.3238224.p0 Protein 2e-34 41
ylcA YP_006167603.1 Transcriptional regulatory protein cusR NC_002952.2859858.p0 Protein 2e-34 41
ylcA YP_006167603.1 Transcriptional regulatory protein cusR NC_013450.8614146.p0 Protein 2e-34 41
ylcA YP_006167603.1 Transcriptional regulatory protein cusR NC_010079.5776364.p0 Protein 2e-34 41
ylcA YP_006167603.1 Transcriptional regulatory protein cusR NC_003923.1003417.p0 Protein 2e-34 41
ylcA YP_006167603.1 Transcriptional regulatory protein cusR NC_002758.1121390.p0 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ylcA YP_006167603.1 Transcriptional regulatory protein cusR VFG0596 Protein 1e-56 53
ylcA YP_006167603.1 Transcriptional regulatory protein cusR VFG1390 Protein 3e-43 43
ylcA YP_006167603.1 Transcriptional regulatory protein cusR VFG1389 Protein 6e-34 41