Gene Information

Name : chpC (CMM_0052)
Accession : YP_001220791.1
Strain : Clavibacter michiganensis NCPPB 382
Genome accession: NC_009480
Putative virulence/resistance : Virulence
Product : serine protease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 70785 - 71645 bp
Length : 861 bp
Strand : -
Note : putative extracellular serine protease, family S1 (chymotrypsin) (YP_063162.1| pat1 protein [Leifsonia xyli subsp. xyli str. CTCB07]). pfam00089, Trypsin, Trypsin.; Function unclear

DNA sequence :
ATGTCAAAAACGCATTTTCGCGGTATTTACTTTATTGTCATTCCCATCGCTCTTGGGCTAATGGCCGCCAGTTCTACGGT
TTGGAGCGCGTTCGCTACCGAGGGCGCCAGGCAGACACGACCAGTAATTGCGGGTTCGCAGCTTGAATTCGAGTTCGGCG
GCGATTGCACTGCAGGTGCTGTGGTACAAAAAAATAGTTGGAGTGCAGTGTTCTTCGCAAAAGAGCGCGCGACTAGATAC
GTAGTGACTGCTAATCACTGTGTTGCGCGCATAGGGGAAAGGGTATTTGTTAGAAACGAGCTCGAGTCTCGTCACGGTCA
TGTTCCCCCCATCGGAACGGTTTATTGGAGATCTGATGACGTCGATCTAGCGTTAATTAAAATTGATCCCATTGTTCACG
TGTCGTACACGTGTGGGAGTTCTTCACATGGCGCGCCCCACTGCTTGCCGGTGACCACCTGGACGCCAAACGCCCTTCCT
CGGGTGCTCACCGCGTCGCTGAGAATGCGGAGCATATATGCCCAACCCGTAATCGGGTACGATAACCCCGGGCTGAATGA
AGCTTTTGCTACAAGCGGTAGCACCACTGGTGTACAGGTGAACTGGCGGAATCTATCCGTTCGTGCTTGGCCACCGGGTT
TCAGGGACCCTCGAAGCGGAGACCAAGCAGCATCTTCCACAACTGACTTTTTGCTTCCGGGAGATTCCGGAGGGCCTGTA
TTTAACCCGGATACGGGTATGCTATACGGAATAATGACCGATCAAGTTCCTCATCGTCTCACAGAGCAGAGCACGATGGT
GTATATCAAGCTATCTCAGTTTTTCCATGAGCAGAGAGAATACAATCTCGTGACACGTTGA

Protein sequence :
MSKTHFRGIYFIVIPIALGLMAASSTVWSAFATEGARQTRPVIAGSQLEFEFGGDCTAGAVVQKNSWSAVFFAKERATRY
VVTANHCVARIGERVFVRNELESRHGHVPPIGTVYWRSDDVDLALIKIDPIVHVSYTCGSSSHGAPHCLPVTTWTPNALP
RVLTASLRMRSIYAQPVIGYDNPGLNEAFATSGSTTGVQVNWRNLSVRAWPPGFRDPRSGDQAASSTTDFLLPGDSGGPV
FNPDTGMLYGIMTDQVPHRLTEQSTMVYIKLSQFFHEQREYNLVTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
chpC YP_001220791.1 serine protease Virulence chp/tomA region Protein 2e-133 100