Gene Information

Name : PflA506_0682 (PflA506_0682)
Accession : YP_006322212.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 799725 - 800399 bp
Length : 675 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence :
ATGCGTATTCTTGTGGTTGAAGACGAGCAGAAAACCGCCGACTACCTGCAACAGGGCTTGAACGAAAGTGGCTACGTGGT
CGACTGCGCCGCCAATGGCGTCGACGGCCTGCACCTGGCAGGGCAACACGCCTATGAACTGGTGATTCTGGACGTCAACC
TGCCGGGCAAGGATGGCTGGCAAGTACTGGAAGAATTGCGCCGCAACGGCACCCAGCGCGTGATGATGCTCACCGCCCGT
GGCCGGCTGGCTGACAAGATCAAGGGCCTGGACATGGGCGCCGACGATTACCTGGTCAAGCCGTTCGAGTTTCCCGAACT
GCTGGCCCGCGTGCGCACCTTGATGCGTCGCAGCGAGCACATTCCACAGCCGGAAGTGTTCCGCGTCTCGGACCTGGAAC
TGGACCCGCGCCGCCACCGCGCTTATCGCGGCACCCGGCGCATCGACCTGACCACCAAGGAGTTCGCCCTGTTGCAAGTG
CTGATGCGCCAGGCCGGCGAAGTGCTGACCCGCACACAGATTATTTCCCTGGTCTGGGACATGAATTTCGACTGCGACAC
CAACGTGGTCGAAGTCTCCATCAGCCGCCTGCGCGCCAAGGTGGATGACCAGAGCGAGGTCAAGCTGATCCACACCATTC
GCGGCGTGGGCTACGTGCTGGAAGCGCGCCCATGA

Protein sequence :
MRILVVEDEQKTADYLQQGLNESGYVVDCAANGVDGLHLAGQHAYELVILDVNLPGKDGWQVLEELRRNGTQRVMMLTAR
GRLADKIKGLDMGADDYLVKPFEFPELLARVRTLMRRSEHIPQPEVFRVSDLELDPRRHRAYRGTRRIDLTTKEFALLQV
LMRQAGEVLTRTQIISLVWDMNFDCDTNVVEVSISRLRAKVDDQSEVKLIHTIRGVGYVLEARP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-54 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-53 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator BAC0125 Protein 7e-62 57
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator BAC0083 Protein 6e-60 57
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator BAC0197 Protein 1e-62 57
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator BAC0638 Protein 2e-55 57
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator BAC0308 Protein 2e-57 55
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator BAC0111 Protein 4e-59 52
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator BAC0347 Protein 6e-54 50
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator U82965.2.orf14.gene. Protein 8e-35 42
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator NC_007793.3914065.p0 Protein 5e-36 41
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator NC_002758.1121390.p0 Protein 5e-36 41
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator NC_010079.5776364.p0 Protein 5e-36 41
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator NC_002952.2859858.p0 Protein 5e-36 41
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator NC_007622.3794948.p0 Protein 5e-36 41
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator NC_003923.1003417.p0 Protein 5e-36 41
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator NC_013450.8614146.p0 Protein 5e-36 41
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator NC_002951.3238224.p0 Protein 5e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator VFG0596 Protein 1e-54 54
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator VFG1390 Protein 6e-42 44
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator VFG1389 Protein 3e-36 43
PflA506_0682 YP_006322212.1 DNA-binding heavy metal response regulator VFG1386 Protein 6e-35 42