Gene Information

Name : sigD (CDHC04_0066)
Accession : YP_005139377.1
Strain : Corynebacterium diphtheriae HC04
Genome accession: NC_016788
Putative virulence/resistance : Unknown
Product : ECF family sigma factor D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 66606 - 67166 bp
Length : 561 bp
Strand : -
Note : -

DNA sequence :
ATGGATCCCGATGATTTGCTCGTCGCGGTTGCTTCTGGTGACCAAGCGGCTTTCGCGCAGCTTTATGACCAGCTCGCGCC
CTATGTTTTAGGCCTGAGCACTCAGGTGATTCATGATCGTGCTCAGGCAGAGGAAGTAACCCAGGAGGTTTTTGTCGAGG
TGTGGCGCACTGCGCCGAGTTTCGACGCCTCCCGTGGTTCGGCACGGTCGTGGATTTTGCGGTTGGCTCGGTCGCGGGCT
ATTGATCGCGTTCGTTCTGATATTGCTTCGAAAAAGCGCGATACCACTGATTTTCTCCATAGTGCCACCACATGGTGTGC
CGCTGAGGAGGAGGCGGTGGAGTCTTTGGAGTCGCAGCAGGTTCGTGCGCTTGTCGATTCCATTGGCGAACCACACCGGA
CGACCATTATGTTGTCGTATTTCCAAGGTCTTACTCATAGCGAGATTGCAGAGGCCACGGGCGTTCCGTTGGGAACAGCG
AAGACACGGCTACGCGACGGCTTGAAAAAACTACGTCAGATTGTTCACCCCCATTTATCTGCGACGGGAGCAGCCCGATG
A

Protein sequence :
MDPDDLLVAVASGDQAAFAQLYDQLAPYVLGLSTQVIHDRAQAEEVTQEVFVEVWRTAPSFDASRGSARSWILRLARSRA
IDRVRSDIASKKRDTTDFLHSATTWCAAEEEAVESLESQQVRALVDSIGEPHRTTIMLSYFQGLTHSEIAEATGVPLGTA
KTRLRDGLKKLRQIVHPHLSATGAAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sigD YP_005124365.1 ECF-family sigma factor D Not tested Not named Protein 2e-75 99
DIP0099 NP_938496.1 RNA polymerase sigma factor Not tested Not named Protein 1e-75 99
sigK YP_005682421.1 ECF family sigma factor K Not tested PiCp 2 Protein 1e-54 75
sigK YP_005680331.1 ECF family sigma factor K Not tested PiCp 2 Protein 3e-53 75
sigK YP_003782453.1 ECF family sigma factor K Not tested PiCp 2 Protein 9e-55 75
sigK YP_005684512.1 ECF family sigma factor K Not tested PiCp 2 Protein 7e-55 75