Gene Information

Name : tomA (SCAB_77321)
Accession : YP_003493233.1
Strain : Streptomyces scabiei 87.22
Genome accession: NC_013929
Putative virulence/resistance : Virulence
Product : tomatinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG3693
EC number : -
Position : 8542762 - 8544363 bp
Length : 1602 bp
Strand : +
Note : -

DNA sequence :
ATGCACCGCATCGGCGCGGCGCTCGCAACTGTCACCATAGGGCTCTTGACCGTGGCCCTCCCCACCACCGGCGCCTCAGC
TGATTCAGACGCGACCCTCCGCGAACTGGCAGCGAAGGAGGGAATCCTCATCGGCTCGGGGGCGACCAACCCCACCTATC
TCGACGAACCGAAGTTCGGCGAGGTGCTGGCGGAACAGTTCAACAGCTTGTCTCCCGAGAACGAGCTGAAGTGGAAATTC
GTCCAGCCCACGGAGGGCGACTTCGAGTTCGGGGGCCTCGACCGGCTCGTCGACTTCGTTGAAGACAACGACATGGTAGT
CAAGGGACACGGGCTCATCTCCCAGTGCTGCAACCCGGAATACGTGACCGACGTCACCGACCCGGACGAGTTGCGCGCGG
TCATGAAGACTCACTTCAACACGATCATGGACCGCTACGCCGGAAAGATGGACCGGTGGGACGTGATGACCGAGCCGTTC
TCCACCTTCGGCGGCACCGGCCTCGCGCCGAACCACTTCTACGAGGTGCTCGGCGAGGACTACATCGCGGAAGCGTTCCG
GATCGCGCACGCCGCTGACCCCGAGGCGAAGCTGTTCATCAACGAGGCGTTGGTGGAGTTCTACCCGGCGAAGCGCCAGG
AGCTCTACGACCTAGTGGCCGGCATGGTCGCCGACGGTGTGCCCATCGACGGGGTGGGCTTCGAGATGCACGAGACACAG
GCGGGTCCCGAGCCCGGAGTCATCACAGAGATGACGAAGTCCTACCAGAAGCTCGGACTCGAAGTCGCGATCACCGAACT
CGACGTGCACACCTACGACGTGGATCAGCAGACGCAGATCTACGGGGACGTCATGGCCGAGGCGCTGGCGGCCGGAATCC
GGGACATCAGCTTCTGGGGCTTCACCGACAAGCACGCCTACACGTGGCTGCCGGGCGCGAAGCCCCTCATGTTCGACGAG
GAGTACAACCCCAAGCCCGCGTACTACGCCACGCGCGACGCTCTGCGGAACTTCGTCTCCGCTTCCTCGGCTGCTGGCGC
CGGCACCCTGTCGAACACCAGCGGGTGGACCCACGGCCTCCATGACGGCAACTACAGCGTGAAGATGAACCTTTGGCACG
GCACGCCAGGCAGCTTCTTCCGTCTTTACGAGAACGACAAGCTCGTCGCCGCGCGGGTGCCCACGACAGTCAGCGGCACC
TCGCAGTCAGTCGTGACCGAATTCAAGGACAGGCCCAACGGCACCTACGCGTACCGGGCCGAACTGATCAACTCGAAGGG
CACCACGTCCACGAACACCACGACTGTCACGGTCACGGATGCCGCCCCGGGCAAGCCCGTGGTCAGCCACGACAACTGGG
ACAAGGACGGCACCTTCACCGCCACCGCGAACCTGTGGTGGGGCACCAACGCCACCTCGTACACCTTCTACCTCGACGGG
GCAGTCGTCGGTGAGGGCCAGCTGGCCGCCGATTCGCCGAACGCACAGTCGCCTCAGGTAGCTCTGTCCGGGGTTCCGAA
GGGCAAGCACAGCCTGAAGGTCGTCCTTACCAACGCGAGGGGATCGACCGAATCGGATCCCGTGGACGTGACGGTCGCCT
GA

Protein sequence :
MHRIGAALATVTIGLLTVALPTTGASADSDATLRELAAKEGILIGSGATNPTYLDEPKFGEVLAEQFNSLSPENELKWKF
VQPTEGDFEFGGLDRLVDFVEDNDMVVKGHGLISQCCNPEYVTDVTDPDELRAVMKTHFNTIMDRYAGKMDRWDVMTEPF
STFGGTGLAPNHFYEVLGEDYIAEAFRIAHAADPEAKLFINEALVEFYPAKRQELYDLVAGMVADGVPIDGVGFEMHETQ
AGPEPGVITEMTKSYQKLGLEVAITELDVHTYDVDQQTQIYGDVMAEALAAGIRDISFWGFTDKHAYTWLPGAKPLMFDE
EYNPKPAYYATRDALRNFVSASSAAGAGTLSNTSGWTHGLHDGNYSVKMNLWHGTPGSFFRLYENDKLVAARVPTTVSGT
SQSVVTEFKDRPNGTYAYRAELINSKGTTSTNTTTVTVTDAAPGKPVVSHDNWDKDGTFTATANLWWGTNATSYTFYLDG
AVVGEGQLAADSPNAQSPQVALSGVPKGKHSLKVVLTNARGSTESDPVDVTVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tomA AAW49296.1 putative tomatinase Virulence Not named Protein 0.0 100
tomA YP_001220829.1 tomatinase, endo-1,4-beta-glycosidase Not tested chp/tomA region Protein 5e-148 58