Gene Information

Name : llrE (lilo_0771)
Accession : YP_007508098.1
Strain : Lactococcus lactis IO-1
Genome accession: NC_020450
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator, OmpR family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 829244 - 829912 bp
Length : 669 bp
Strand : +
Note : Rec-wHTH domains

DNA sequence : 
GTGAATATGGAACAACGAATACTAATAATTGAAGATGAAGAAAGTCTCTCTAATTTATTAAAGACTGAACTTTCCTTTGA
AGGATATGAAATTAACACTGCAGCTGATGGAATTTCAGGATTAAAAATTTTTGAACAAGAACAATTGGATCTGGTTATAC
TTGACTGGATGATTCCAAAACTTGATGGTCTTGAAGTTTTACGACGTATGAAAAAAATTAATAAAGAAGTTCCAGTAATA
TTTGTAACTGCGAGAGACTATGTGGGAGATAAAGTTGCAGGTTTGGATGCAGGGGCTGATGATTACTTAACAAAACCCTT
TAGCATTGAGGAGCTCATGGCTCGGTTGCGAGTGATTTTTAGAAAACATACACAACCAACGCAATATGCTTATGGTGAGA
TTTCTCTTAGTCAGAGTGAACATATTGTTAAATATGGTGGAAAACCGATTAATTTAAGCCAGAGAGAGTTTGCTCTATTA
CTTTTTTTATTTGAACATCAGGGGGAGATTATCTCAAGGGATGATATCCTTGATGAAGTTTGGGGAATGAACTTTGGTGG
TCAGCTAAATACTGTGGATACTTACATACGCTATTTACGAAAAAAATTAGATAAAAATATGATAGAAACAATAAGAGGTT
TAGGATATAGACTTAAAAAAAATAAATAA

Protein sequence : 
MNMEQRILIIEDEESLSNLLKTELSFEGYEINTAADGISGLKIFEQEQLDLVILDWMIPKLDGLEVLRRMKKINKEVPVI
FVTARDYVGDKVAGLDAGADDYLTKPFSIEELMARLRVIFRKHTQPTQYAYGEISLSQSEHIVKYGGKPINLSQREFALL
LFLFEHQGEIISRDDILDEVWGMNFGGQLNTVDTYIRYLRKKLDKNMIETIRGLGYRLKKNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-40 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
llrE YP_007508098.1 DNA-binding response regulator, OmpR family HE999704.1.gene1528. Protein 1e-34 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family NC_003923.1003417.p0 Protein 3e-38 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family NC_013450.8614146.p0 Protein 3e-38 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family NC_002951.3238224.p0 Protein 3e-38 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family NC_007793.3914065.p0 Protein 3e-38 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family NC_002758.1121390.p0 Protein 3e-38 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family NC_010079.5776364.p0 Protein 3e-38 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family NC_002952.2859858.p0 Protein 3e-38 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family NC_007622.3794948.p0 Protein 3e-38 43
llrE YP_007508098.1 DNA-binding response regulator, OmpR family BAC0197 Protein 7e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
llrE YP_007508098.1 DNA-binding response regulator, OmpR family VFG0596 Protein 2e-40 45
llrE YP_007508098.1 DNA-binding response regulator, OmpR family VFG1386 Protein 5e-45 42