Gene Information

Name : DNO_0901 (DNO_0901)
Accession : YP_001209793.1
Strain : Dichelobacter nodosus VCS1703A
Genome accession: NC_009446
Putative virulence/resistance : Virulence
Product : two-component copper resistance response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 942468 - 943157 bp
Length : 690 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCACATATTGGTAATTGAAGACGATCAAGATGCCGCAGCCTATATTGCAAAAGGATTGACTGAAAGCGGTTATGTTGT
TGATACCGCGCATACCGGCAGCAAAGGATTAATGATAGCGCAAAAAGGTCAATATGACGTTTTAATCGTTGATCGCATGT
TGCCGGAATTAGATGGGCTTTCTTTAATTCAACAATTGCGCGCTCAAGGAGCCAGTACTCCAGTATTAATTCTTTCGGCT
TTGGGAGAAGTTGACGATCGCGTTGAAGGACTTGCTGCCGGCGGTGATGATTATTTGGTTAAACCTTATGCGTTTTCGGA
ACTTTTAGCACGCGTGCAATCGCTGGCGCGGCGGCGTAATACCGACGTTCACGATCAAATGGTACTAGAAATTGCGGATT
TGCATCTCGATCGATTGCGGCGCAAAGTAACCCGTGCGGGAAAAAAGATTAATTTACAACCGCGCGAATTTCGTCTTTTG
GAATATTTAATGAGCAATTCTGGGCAAGTGGTGACGCGCACCATGCTTTTAGAAAAAGTTTGGGAATATAATTTTGACCC
GCAAACCAACGTGATTGATGTTCATATTTCACGTTTGCGCAGTAAAATCGACAAAGATTTTAATCCTCCTTTAATTCATA
CCGAACGCGGCGCCGGTTACAGCATGTATGATCCATCCACTTATCGCTAA

Protein sequence : 
MHILVIEDDQDAAAYIAKGLTESGYVVDTAHTGSKGLMIAQKGQYDVLIVDRMLPELDGLSLIQQLRAQGASTPVLILSA
LGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRRNTDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLL
EYLMSNSGQVVTRTMLLEKVWEYNFDPQTNVIDVHISRLRSKIDKDFNPPLIHTERGAGYSMYDPSTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-44 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-43 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DNO_0901 YP_001209793.1 two-component copper resistance response regulator BAC0308 Protein 4e-51 51
DNO_0901 YP_001209793.1 two-component copper resistance response regulator BAC0125 Protein 4e-51 50
DNO_0901 YP_001209793.1 two-component copper resistance response regulator BAC0083 Protein 8e-53 50
DNO_0901 YP_001209793.1 two-component copper resistance response regulator BAC0638 Protein 4e-46 48
DNO_0901 YP_001209793.1 two-component copper resistance response regulator BAC0347 Protein 8e-51 48
DNO_0901 YP_001209793.1 two-component copper resistance response regulator BAC0111 Protein 2e-55 48
DNO_0901 YP_001209793.1 two-component copper resistance response regulator BAC0197 Protein 2e-48 48
DNO_0901 YP_001209793.1 two-component copper resistance response regulator AE015929.1.gene1106. Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DNO_0901 YP_001209793.1 two-component copper resistance response regulator VFG0596 Protein 2e-44 46
DNO_0901 YP_001209793.1 two-component copper resistance response regulator VFG1390 Protein 2e-44 42
DNO_0901 YP_001209793.1 two-component copper resistance response regulator VFG1389 Protein 3e-36 42