Gene Information

Name : PSPTO_0092 (PSPTO_0092)
Accession : NP_789951.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase family protein
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 111972 - 113465 bp
Length : 1494 bp
Strand : +
Note : similar to SP:P23883, GB:M11147, GB:M10119, GB:M12938, GB:X03742, GB:X03743, SP:P02792, PID:1340145, PID:1340146, PID:182514, PID:182516, PID:182518, PID:2230869, and PID:28519; identified by sequence similarity; putative; see PMID:20190049 for expression

DNA sequence :
ATGACCACCCTGACCCGTGCTGACTGGGAACAACGCGCCCAAAATCTGAAGATCGAAGGCCGCGCCTTCATTCAAGGTGA
ATACACCGCTGCCGCCTCCGGCGAGACCTTTGACTGCATCAGCCCGGTCGATGGCCGGTTGCTTGCCAAGGTCGCCAGTT
GCGATGCCGCCGACGCCCAGCGTGCGGTAGAAAGCGCTCGCAGCGCCTTCGACTCGGGCGCCTGGTCACGACTGGCCCCG
GCCAAACGCAAGGCCACCATGATCCGTTTCGCCGGGTTGCTTGAGCAGAATGCTGAAGAACTGGCCTTGCTTGAAACGCT
GGACATGGGCAAGCCGATCAGCGACTCGCTGGGTGTCGACATACCCGGCGGCGCCCGGGCCCTGAGCTGGAGCGGCGAGG
CGATCGACAAGCTGTATGACGAAGTCGCCGCAACACCTCATGACCAACTGGGCCTGGTAACCCGCGAGCCGGTCGGTGTT
GTGGCTGCTATCGTGCCGTGGAATTTCCCGCTGATGATGGCCTGCTGGAAGCTCGGCCCTGCGCTGTCCACCGGCAACTC
GGTGGTGCTCAAACCGTCGGAAAAATCCCCGCTGACGGCCATTCGCATCGCGCAATTGGCTATCGAGGCCGGCATTCCGG
CGGGCGTGCTCAATGTGCTGCCGGGTTACGGCCACACCGTTGGCAAGGCGCTGGCGTTGCACATGGATGTGGACACGGTG
GTGTTCACCGGCTCGACCAAAATCGCCAAACAACTGATGATCTATGCGGGCGAATCGAACATGAAGCGCGTCTGGCTGGA
GGCCGGCGGCAAAAGCCCGAACATCGTCTTTGCCGACGCCCCTGACCTGCAGGCAGCCGCCGACTCCGCCGCCAGCGCAA
TTGCCTTCAATCAGGGCGAAGTCTGCACGGCGGGTTCGCGCCTGCTGGTCGAACGCTCCATCAAGGATCGCTTCCTGCCA
ATGGTGATCGAAGCCCTTGGCACCTGGAAACCCGGCAATCCGCTGGACCCGGCGACCAATGTCGGCGCACTGGTCGATAC
TCAGCAGATGAACACAGTGCTGTCTTACATCGCAGCCGGGCATACCGATGGCGCCAGGCTGGTCGCGGGCGGCAAGCAAA
TTCTGCAGGAGACTGGCGGGACTTACGTCGAGCCAACGATTTTTGACGGCGTGAACAATGCCATGAGGATCGCGCAGGAA
GAAATCTTCGGCCCGGTGCTTTCGGTGTTGACGTTCGACACAGCCGAAGAAGCCATCCAGATCGCCAACGACACGCCATA
CGGCCTGGCCGCTGCGGTATGGACCGCGAACCTCTCCAAGGCGCACCTGACCGCCAGAGCACTGCGCGCGGGCAGTGTGT
GGGTCAACCAGTACGACGGCGGCGACATGACCGCGCCGTTCGGCGGCTTCAAACAATCGGGCAACGGCCGCGACAAATCG
CTGCACGCGTTCGACAAATACACTGAGCTGAAATCCACCTGGATCAAGTTGTAA

Protein sequence :
MTTLTRADWEQRAQNLKIEGRAFIQGEYTAAASGETFDCISPVDGRLLAKVASCDAADAQRAVESARSAFDSGAWSRLAP
AKRKATMIRFAGLLEQNAEELALLETLDMGKPISDSLGVDIPGGARALSWSGEAIDKLYDEVAATPHDQLGLVTREPVGV
VAAIVPWNFPLMMACWKLGPALSTGNSVVLKPSEKSPLTAIRIAQLAIEAGIPAGVLNVLPGYGHTVGKALALHMDVDTV
VFTGSTKIAKQLMIYAGESNMKRVWLEAGGKSPNIVFADAPDLQAAADSAASAIAFNQGEVCTAGSRLLVERSIKDRFLP
MVIEALGTWKPGNPLDPATNVGALVDTQQMNTVLSYIAAGHTDGARLVAGGKQILQETGGTYVEPTIFDGVNNAMRIAQE
EIFGPVLSVLTFDTAEEAIQIANDTPYGLAAAVWTANLSKAHLTARALRAGSVWVNQYDGGDMTAPFGGFKQSGNGRDKS
LHAFDKYTELKSTWIKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 2e-122 58
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-71 41
hpaE AAO17179.1 HpaE Not tested tcd island Protein 2e-64 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_0092 NP_789951.1 aldehyde dehydrogenase family protein VFG0082 Protein 1e-71 41