Gene Information

Name : B479_04485 (B479_04485)
Accession : YP_007227756.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : two component heavy metal response transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1018391 - 1019065 bp
Length : 675 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGCGTGTGCTGATCATCGAAGACGAAGAAAAAACCGCCGACTACCTGCATCGCGGCCTCAGCGAGCAGGGGTTTACCGT
CGACCTGGCGCGGGACGGCATCGAGGGCCTGCACCTGGCCCTGGAAGGTGACTACGCGGTGATCGTGCTGGACGTGATGC
TGCCGGGCATGGACGGCTATGGCGTGCTGCGCGCCCTGCGCGCACGCAAGCAGACGCCGGTCATCATGCTGACCGCCCGT
GAAAGGGTCGAAGACCGTATCCATGGCCTGCGCGAGGGCGCCGACGACTACTTGGGCAAGCCGTTTTCCTTCCTCGAACT
GGTCGCCCGCCTGCAAGCCCTGACACGCCGTAGCAGCAATCATGAACCGCTGCAGGTGCAGGTAGGTGACCTGTGGATCG
ACCTGATGGCGCGCAAGGCCACCCGCGCCGGCCAACGCCTTGAGCTGACGGCCAAGGAGTTCTCGCTGCTCAGCGTGCTA
GCCCGCCGCCAGGGCGAAATTCTGTCAAAGACAGCGATTGCAGAGCTGGTCTGGGACATCAATTTCGACAGCGATGCCAA
CGTCGTCGAAGTGGCGATCAAGCGCCTGCGCGCCAAGCTCGACGGGCCTTTCGACAACAAGTTGCTGCACACCATCCGAG
GCATGGGCTATGTCCTGGAAAGCCGTGCGGGGTAA

Protein sequence :
MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIEGLHLALEGDYAVIVLDVMLPGMDGYGVLRALRARKQTPVIMLTAR
ERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSSNHEPLQVQVGDLWIDLMARKATRAGQRLELTAKEFSLLSVL
ARRQGEILSKTAIAELVWDINFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLESRAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-55 53
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-54 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator BAC0125 Protein 6e-63 57
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator BAC0083 Protein 1e-57 56
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator BAC0197 Protein 8e-59 56
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator BAC0111 Protein 3e-58 53
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator BAC0638 Protein 3e-50 53
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator BAC0308 Protein 2e-54 49
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator BAC0347 Protein 1e-51 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator VFG0596 Protein 2e-55 53
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator VFG1389 Protein 7e-38 47
B479_04485 YP_007227756.1 two component heavy metal response transcriptional regulator VFG1386 Protein 2e-35 44