Gene Information

Name : Plav_0944 (Plav_0944)
Accession : YP_001412224.1
Strain : Parvibaculum lavamentivorans DS-1
Genome accession: NC_009719
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1014934 - 1015611 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mmr:Mmar10_0943 two component transcriptional regulator, winged helix family

DNA sequence :
ATGCGCATTCTGGTAATCGAAGACGATCTTGAAGCGGCTGCCTATGTCGTGAAAGGTCTCCGCGAAAGCGGCCACATCGT
CGATCACGCGGCGGATGGAGAAGAGGGGCTGACCTTCGCCCTCTCCAGCACTTTCGACGTGATGATCGTTGATCGCATGT
TGCCCAAGCGCGACGGTCTGAGCGTCGTGGAGACCCTGCGGGAGGAATGCGTCCGCACCCCGGTGCTTTTCCTTTCCGCC
CTGGGCGAGGTCGATGACAGGATCAAGGGGCTCAAGGCCGGCGGTGATGACTATCTGACCAAGCCCTATGCCTTTGCGGA
ACTTCTCGCCCGTATCGAGGTCCTGGTCCGCCGTGCAAATCCGGACCAGGTCCGCACACGGCTGCAGGTCGGCAGCCTGG
AAATCGACCTGCTCGCCCGCAAGGTCATCCGCGATGGCACGGAAATCGACCTCCAGCCGCGCGAATTTCGCCTCCTCGAG
TATCTGATGAAGCATGCCGGCCAAGTCGTCACGCGGACCATGTTGCTCGAGAACGTATGGGAGTATCATTTCGACCCGCA
AACGAACGTGATCGACGTGCATATTTCGCGGCTCAGGGCGAAAATCGACAAGAACTTCGAGCAGCCGCTCTTGCACACGG
TCCGTGGGGCTGGATACTCGCTGCGTGCCGCTGATTAA

Protein sequence :
MRILVIEDDLEAAAYVVKGLRESGHIVDHAADGEEGLTFALSSTFDVMIVDRMLPKRDGLSVVETLREECVRTPVLFLSA
LGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRANPDQVRTRLQVGSLEIDLLARKVIRDGTEIDLQPREFRLLE
YLMKHAGQVVTRTMLLENVWEYHFDPQTNVIDVHISRLRAKIDKNFEQPLLHTVRGAGYSLRAAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-42 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-42 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plav_0944 YP_001412224.1 two component transcriptional regulator BAC0125 Protein 1e-51 50
Plav_0944 YP_001412224.1 two component transcriptional regulator BAC0083 Protein 4e-53 49
Plav_0944 YP_001412224.1 two component transcriptional regulator BAC0638 Protein 3e-46 47
Plav_0944 YP_001412224.1 two component transcriptional regulator BAC0347 Protein 7e-50 46
Plav_0944 YP_001412224.1 two component transcriptional regulator BAC0111 Protein 3e-54 46
Plav_0944 YP_001412224.1 two component transcriptional regulator BAC0197 Protein 7e-46 46
Plav_0944 YP_001412224.1 two component transcriptional regulator BAC0308 Protein 1e-44 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plav_0944 YP_001412224.1 two component transcriptional regulator VFG0596 Protein 5e-43 46
Plav_0944 YP_001412224.1 two component transcriptional regulator VFG1389 Protein 5e-36 45