Gene Information

Name : copS (SBG_0941)
Accession : YP_004729824.1
Strain : Salmonella bongori NCTC 12419
Genome accession: NC_015761
Putative virulence/resistance : Virulence
Product : histidine kinase
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0642
EC number : -
Position : 1049623 - 1050984 bp
Length : 1362 bp
Strand : -
Note : -

DNA sequence :
ATGATTAAGTTATCCATGACGCTGCGCCTGTCAATTTCCTTTATCGCCATACTTATCCTCGTCTGTACCAGCATCAGCTG
GACGCTTTATAACGCGTTAAGCAAAGAATTAACATGGCGCGACGATCTGACGCTAATAAACCGGGCGGCGCAAATGCAGC
AACTGTTGCTGGATGGCGCCAGACCGGAAAATCTACCGCTTTATTTTAACCGGATGGTGGATACGAAGCAGGATATATTG
TTAATACATTCACCCACAGATCACCGTGTGACGATAAACCATAGTGGTATCCCCGACGAGCGTTTTAACGCAATTCCGGT
CACTAAAAAAATAACCCGTGACACGTTATTTCGCCAGCGAGTTCAAGGAGCGGAGCTGACTGCGGTACGGGTAAACGCCA
GAAGCGGCGATATTCCACTGACTCTTACTCTTGCCAGGCTGGCGACGGAAAGACGGCAAATGCTGGAGCAGTATCGTCAC
AATAGTTTACTGATAAGCCTTGTCGCAATCCTTGTTTTTTCGGCACTCAGTCCGCTAGTCATCAGAAACGGGCTGCGGGC
CATTACGTCACTCAGCCGGCTCACGGCGGCAACAGACAGCGGCACACTCCGCCAGCCGCTGGCGGAACAGACGTTACCCG
CCGAGCTCAGACCACTTGGGAAGGCGCTCAATATCATGCGCCAGAAGCTTTCCGGCGATTTTGAACGCCTGAATCAATTT
GCCGACGATCTGGCGCATGAACTGCGTACGCCGGTCAATATTCTGCTGGGGAAAAATCAGGTAATACTGAGTCAGGAACG
TAGCACAGAAGAGTATCAGCAAGCCCTTGTTGATAATATTGAAGAGCTGGAGGAACTGTCGCGGCTGACAGAAAATATCC
TTTTTCTGGCGCGCGCGGAGCACCAGAATATAGTAGTAGAAAAACATCCCATTCCACTCAATGAGTTGATTGAAAATATG
CTCGATTATCTTAGCCCGCTTGCCGAGGAGAAGCGCATCCGCGTTATAAGCGAATGCCAGGGCACAGTATGGGCCGATAA
AATGTTATTACAAAGAATGCTTTCTAATCTGTTAACGAATGCTATCCGCTATTCTGAAGAAAATGCCGTAATACGTATTG
AAAGCGCTTATGAGAATGCCATTACCGAAATCAGGACCGCTAATCCGGGAAGTCATCCCGCCGATCCGGACAAGCTCTTC
AGGCGTTTTTGGCGAGGAGATAATGCCCGCCACACCACCGGTTTTGGTCTGGGATTATCGCTGGTTAATGCCATTGCGAC
GTTACACGGCGGCTCAGTCTCTTATCGCTATGCCGATGAACATCACCTCTTTTCGGTTTATCTGCCTGCCAGCAAATCAT
AG

Protein sequence :
MIKLSMTLRLSISFIAILILVCTSISWTLYNALSKELTWRDDLTLINRAAQMQQLLLDGARPENLPLYFNRMVDTKQDIL
LIHSPTDHRVTINHSGIPDERFNAIPVTKKITRDTLFRQRVQGAELTAVRVNARSGDIPLTLTLARLATERRQMLEQYRH
NSLLISLVAILVFSALSPLVIRNGLRAITSLSRLTAATDSGTLRQPLAEQTLPAELRPLGKALNIMRQKLSGDFERLNQF
ADDLAHELRTPVNILLGKNQVILSQERSTEEYQQALVDNIEELEELSRLTENILFLARAEHQNIVVEKHPIPLNELIENM
LDYLSPLAEEKRIRVISECQGTVWADKMLLQRMLSNLLTNAIRYSEENAVIRIESAYENAITEIRTANPGSHPADPDKLF
RRFWRGDNARHTTGFGLGLSLVNAIATLHGGSVSYRYADEHHLFSVYLPASKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copS NP_460068.1 copper resistance protein Not tested SPI-5 Protein 4e-180 87
copS AAC33720.1 histidine kinase Not tested SPI-5 Protein 1e-176 85

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copS YP_004729824.1 histidine kinase VFG0595 Protein 2e-180 87