PAI Gene Information


Name : ratB
Accession : AAD25112.2
PAI name : CS54 island
PAI accession : AF140550
Strain : Salmonella enterica RSK2980
Virulence or Resistance: Virulence
Product : RatB
Function : -
Note : -
Homologs in the searched genomes :   87 hits    ( 70 protein-level,   17 DNA-level )  
Publication :
    -Kingsley,R.A. and Baumler,A.J., "Direct Submission", Submitted (05-APR-1999) Medical Microbiology and Immunology, Texas A&M University, Reynolds Medical Building, College Station, TX 77843-1114, USA.

    -Kingsley,R.A. and Baumler,A.J., "Direct Submission", Submitted (21-JUN-1999) Medical Microbiology and Immunology, Texas A&M University, Reynolds Medical Building, College Station, TX 77843-1114, USA REMARK Sequence update by submitter.

    -Kingsley,R.A., Humphries,A.D., Weening,E.H., De Zoete,M.R., Winter,S., Papaconstantinopoulou,A., Dougan,G. and Baumler,A.J., "Molecular and phenotypic analysis of the CS54 island of Salmonella enterica serotype typhimurium: identification of intestinal colonization and persistence determinants", Infect. Immun. 71 (2), 629-640 (2003) PUBMED 12540539.

    -Kingsley,R.A., van Amsterdam,K. and Baumler,A.J., "The presence of a pathogenicity island specific to Salmonella enterica subspecies I correlates with adaptation to warm blooded animals", Unpublished.

    -Kingsley,R.A., van Amsterdam,K. and Baumler,A.J., "Direct Submission", Submitted (09-SEP-1998) Medical Microbiology and Immunology, Texas A&M University, 407 Reynolds Medical Building, College Station, TX 77843-1114, USA.

    -Kingsley,R.A., van Amsterdam,K., Edwards,E.W., Hargis,B.M. and Baumler,A.J., "Complete sequence of the xseA-hisS intergenic region of the S. enterica serotype Typhimurium genome and its distribution within the genus Salmonella", Unpublished.


DNA sequence :
GTGAAATCGAAAAAGTGTGTCGGTTTTTTACCCTGGCTGCTGCTATGCGCCCTCAGTTTAACGCCTTTCTTCGCGCAGGC
CGTGCGAAGAAGCGGCGCATGGCAGGAACTCACTGAGCAAACTGCGGCTATTAATGGCACTCCGCCTCAGGCCGACAGTG
TAACGATCCCGGTATATCAGGGCAGCGTGCAGTTGCGCTCTGATGCGGCGAATCCTGTTGACTACTCCGCGAAGCCCAGC
CAGTTCAGCACCAGTGATGTCGGCAGCGCGCTGACCTTAACCAATCCGCACGACACCGAAGGCGATATCTTCGCCGTGCC
GCCGCTGGCCTGGCAGGCTGAACGCGCGCCCGCCGTTACGCTGGTGTGGGCCGACGCCGCCACGCCGGACACGCCGCTTG
ATCCACAACCCGTCAGCAATATAAGTTTCTGCGCGCAGAATCTGGCGGGCCGCCATCTGGTGGTCTGGTCGCAACTGGAT
ACCTCAACCGCCATACCGCCGCTGTGGTTGCTTACCCGCACCGGCGTGCCTTATAACACGGCGGTCGAAGTGCTTGATCA
AAAGTTTGCCGTGGATATCGCGCCCGCCGTGGGCGACCCGGTAACGCTCGCCGCCGATCATCTGGATGAGTCGCTCAACG
CCGCGAAGGTCAAAGCGGGCGAAAGCATCATGCTGACGGTAACGACCAAAGACTGCGGCGGCGAACCGGAGGGCAACGTT
GATTTCGTGATTACCCGCGGCGACGCGCAAAACCGCCAGGGCGTGGTAAACAATGCCGCGCCGGTGCGCGTCGGCAACAC
CGAACTGACCACCACCGCCACGGAATATCACGGTACGACCAACGCCGAGGGCGTGGCGACCGTGGTCGTCACCCAGGCGA
ACGGCCCGGGCGTTAAAACGCCGCTGATAGCGCACCCGTCGAGCGCGCCAGCGCTGAAAGCCAGCGTGGACGTGATTTTT
ACCACCCTCACCAGCCCGGACAGCAGCAGCGCCAACATGTACGGTCATATGGGAGAGACGTCCACCGCCACGGTGGACGG
CGCAAGCTACACCTTTTACCGCCCCAAACTGGCGGCGGAAACCGACAGTGAAGACCGCACCGCCAGCATCAACAATGAAA
CCTGGGCGCAGTTCAACTGGGGCCACGCCGACGCGCACTGCGATATTCTGCCGGATGCACGCCAACTGGAAGGGTTAAAA
ATTGCGCGCGGCGATCTGGCCACCACCCTCGGCTGGCCGGTAGGGCTGACATCCGGTGACGAAGAGTACTGGTCCTCCTC
CCAGGGATCGACTGCCACTGACCATATCAGCATTGATATGCGCAGCCGCGCCCTTACGCAGATGCCGGACGCCACGCAAT
CGCTGGTTAGCTGCGTGGATAAAGCCCCGCCTGCGGTCACGCCGAAATTAGTGATTAGCGCCGATAATTTTGATTCAACG
GTCAACGCGGCGAAAGTGAAGGTGGGCGAAGAGATCAACATGAAGATCACCGTCACCGACAGCGCCACCAATAAACCGCT
GCCTTATCGCTACTTTAACGTCTACCTGGGCGACGAGCAAAATCGCCAGAATCAAAAGAACGCCGATATTGATAGCGGGC
ATCAGTGGACGGATGATCCGGTAATTATCACCAATCTGGAAGGCAGCGACGGTCACTATCACGGCGTCACCGACGCCAAC
GGTCAGTTCTCGCTGGTGTTGACTCAGGACAAGGGGGCGGGCGTATTAACCCCGGTGCGCGTGGTGCTGTTCGACGGCAC
GGAAGCGACGCAGAACGTGATTTTTACCGTCGTCACCAGCCCGGACGTGGCGCAGGCGCGCATGTGGGGCCATATGCAGG
GCGTGGTGGAAGCGGGCAATATCTACAAACGCCCGCTGCTGGCGGACGAAGCCGCGCAGGATACCGGTTCCGAATTTGAG
AATAACGAATACTGGGCGACGTTTAACTCGGTAACGGCGGCGACGAACCAGTGCGGTACCGGCCAGGTGCCGGGGCAACT
GTTGCTGGATACGCTGTATCAGGCCCATTCCGGCAACGCGATGGAAACGACCTACGGCTGGCCGACGCAGAAACACAGCT
ATATCGCGGCGGATACTGATGGTTCCACCACCGCGCACGTCAACCTGGCGACCGGTGCGGACAGCACGTTCAGCGGCACC
GAACCGAACTATCTCTCCTGCTCCGGCAATGAGTTGGTGACCAGTCTGGACGTTTACTTTAATGGCGATGAGTCGTTACG
CAATGCGGTAGCCAAAGTCGGCGAACAAATCACGATGAACGTCCATTCCGTCAATGCGCTGAATGGGTTAAGCGTGCCTA
ACGCCAGCTTTACCGTCACCATGTCGCACGGCAAAAATCGCGACAACGCCACCACGGGCTTTACCGATCCCAGCGACGGA
ACGCTGGTGATGGGCGGAACGCCTTTCGGCTCTTCCCAGGCGTCGATGACGTACCAGGGCATGACCGATGCCGAGGGCAA
CGCCACGCTGGTGATTGAACAGCCGCAGGGCGTGGGCTTGCTGACGCCGCTGAGCGTACTGCCGGTCAACTCACTGATTA
CCACGCCCGTCAACCGCAGCGTGAAATTTACCGTTGCCACCAGCCCCGATACGCCGGAGGCGCAGATGTGGGGTCATATG
GCGGACACGCTCACCGTGGGTGATATGAAATTCCAGCGGCCAAAGCTGGCGGCGGAAGCGACTGCCGCCACCCGTACCCA
GGAGCAGGATAACGAAACCTGGGCGCGTGTCAGCCACGCCGACGCGCTGAATAACCCCAACGCCGGGGGCTGCGAGGCCG
GCCATCTGCCGCGCGCCGATCAGCTTGCCGCACTGTATGCCTCCAGCGACGGCAATAAAATCCACACCGTATCCGGCTGG
CCGACTGAGTATGACTACTGGTCATCCACCTTCGCCAGCGCCGCTACATGGCAGGCGGTATCACTGGCTGCGGGCGGCTA
TACCGCTTCCGGCGATGCGTCGGACTACGTGAGCTGTCTGGTCAGCAAAAATCCGACGGCGGCGTCTATCACCATTGAGC
CGGTGAATGCGGCATTGTGGTATAACGCAAACAGCGAACACGCGGTGAAGGTGAAAAAGGGCGATACGCTCCAGCTTAAA
GTGACGGTAAAAGACGCCAGCGGCAATCCGCTGCCGCAAGCGCCGTTCGTGTTAAGCCGCGGCGACGGCTATACCCGCCA
GGGGGAGAAACATATCGCCGGTAGCGGCGACGGCATCGTCTCGGCGGTGGTGATCGACGGCGATTCGCTCAACGACACCG
CCACCAAAATCGGCGGCATGACCGGTGAAAACGGCAGCAAAATCATCAACGTCACCCGCCCGGACACCCACGGGACGAAA
GTCGCGATTACGGCGGCGCTGTACGACAACGCCAGCGCGACGGCCAGCATCGACACTATTTTCACCGTGGTCACCAGCCC
GGACAGCGACAAAGCCAAAATGTGGGGCCATATGCCGGAAACGACGACGGCGGCCAACGGCGAGGTGTTTAAGCGCCCGC
TGTTATCGGCTGAAATCGCCAGCGGCGTTACCCACGGCGACAATACGGAAAACAACGAAGCGTGGGGAATCGTCGATTTT
GAAATGGCGAACGACGCCTGCGGCGCGGGATACGTGCCGACCCTTGCCGATATGCAATCGCTGTACGACGCCAGGCCCGG
CGGCGCCATGAATACGCAGCAGGGCTGGCCGCTGGACGGTAAAAACTACCAGGACAGCACCGCCGATTTGAGCCGGAGTA
CGCAAAACCGCTACGTTAAGTCGATTAATCTGCGCGACGGCGGCGTCGGTTCGCTATTGTGGAATGAACAACTCTATTTT
GTCTGCCTGCAAAACGCCCATCCGGCGGCGACGCAGATAACGCTCACTTCGCCTGTGTATAACGACAGCGACGGATTCGC
CAAAGCGAAAGTCGGCGAGACCATCCCGGTCATCATCACCACGCGGGATGCCCAGGGCAACCCGGCCGCCGACACGCCGG
TTATCTTTACGCGCGGCGACAGCGTCGGGCGCGCGAATCAGGAGGTGAATAGCTCGGCGGCGGCGGATATACAGATAAAC
CACAGCGACGGGCGTAGCAGCGGCGCTAACTATTACACCGCCACGGGCGCCGACGGCACACTGACGCTGAATATCAGCCA
GGACAGCGGCGCGGGCTTTAAAACGCCGCTGACGGCGGCGATAGAACACAACGGCGTAACGAGCGCGCCGCTGCCGGTCA
TCTTTACCGTGGTCACCAGTCCGGACACGCCGAAGGCCAACTACTGGGGCCATATGGCGGAAACGCTGACCGACAGCAGC
GGCGTGGCGTACAGGCGTCCGCTGCTGGCCAGCGAGTTTAGCGCTACGCCCGGCAAAACGCTGACCATCGCCAACGGCTA
CTACGACAAAGGCGAAACCTGGGGCATGATAACCGTCGATAAAGCCTGGAACGGCACCGGTGGCGGCTGTGGGCGCGACA
CGCTACCGACCGTAGCCAACCTCCAGACACTGTACGGGACATACCCGGATAACGCCATGCGCAGCCGTAACGGCTGGCCG
ATGACCAGTTCAGGCAACAACAACGTCAGCCGCTACTGGTGGGCGGGGGATTACGTGATATCGTCAGACGGCACGAAGTC
GCTCTATGCGGCGGTCAACCTGTTTAACGACGGCAATGATGTCAAAACGACGACCAGCACCTCGATGTACTACATGCAGA
CCTGTCTTGCCTCGCCGCGCAGCGCCGCCGCCAGCCTGACGCTGACGCTGGCAGGCCAGGATGAAACCACCGGAAGCGCA
AAGGCGAAGAAGGGCGAGCAGATGGCCGCCACCATCGACGTGAAAGACGCCGCAGGTCAGCCGATGAAAAACGTGATGGT
GAAAATCAGCCGCGGATCTTCGTACAATCGCGCCAACAGCGCCACATCGTCCTCAAGCATCACAGACGATATTACGCTGC
GTAATGTGATGCCGTCCGGCCTGGCGACATACCTGCTGGATACCTCGGCGAAATATCTGTATGCGCAAACTGATGCCCAG
GGACAGGTGACATTTACCCTTGCGCAGGACAGTACCGCCGGTTTAAAAACCACTATCAGCGCCGCCACGATGGACGGCAG
CAACCTGACAGACAGCAAAGACGCAATCTTTACCGTAGTGACCAGCCCGGACAGCGATAAGGCCAAATACTGGGGCCATA
TGCCGGAAACCTTTACCAACAGTAAGGGGGTTGAATTTAAGCGACCGCTGCTGCGCGCTGAACTTTCTTCAACGGCGGAC
ACGTCGGGTTATACGGAAAATAACGAGACCTGGTATACCTGGAGCCGTTATCCGAATATGTATCAGGACACCGCCAGCCC
GTGCGATCGGCTGGGGTTGCCGACGGTAAATGATTTACAGACGCTATATACCGATTATCCCAATGGCGCACTCACGACAA
CGCTTGGCCTACCGGTGGCATCAGGAAAATATTGGGGGGCGGGTAACTCAGTACCGGATGCCACGCACTCAGACAGTCAG
TTTCAGTATGTCAGACTCAGCGATAATAATACGCTGACAACCAAAGCCAATACCGCCACGGCGCAGCTTTGTCTGGCAAA
GCGCCGGGACTTGTCGATAGAACTCACTTCCAGCGACATGGATGCGGATAAAGGCGCTCCAGTGGCGAAGAAGGGCGAGA
GCCTGCCGTTGACCGTCACTGTGAGGGATGGTTCCGGCACGCCGCAGCCCAATACCGCTATCCGTTTGGGACGAACGCTT
TCGATAGACCGGGCGGGTGTCGTTGATGGCAGTTCCGGCGGAGGCAGGTACTCACATCGGTTGCGCCGTCTACGGGCTCA
ATGA

Protein sequence :
MKSKKCVGFLPWLLLCALSLTPFFAQAVRRSGAWQELTEQTAAINGTPPQADSVTIPVYQGSVQLRSDAANPVDYSAKPS
QFSTSDVGSALTLTNPHDTEGDIFAVPPLAWQAERAPAVTLVWADAATPDTPLDPQPVSNISFCAQNLAGRHLVVWSQLD
TSTAIPPLWLLTRTGVPYNTAVEVLDQKFAVDIAPAVGDPVTLAADHLDESLNAAKVKAGESIMLTVTTKDCGGEPEGNV
DFVITRGDAQNRQGVVNNAAPVRVGNTELTTTATEYHGTTNAEGVATVVVTQANGPGVKTPLIAHPSSAPALKASVDVIF
TTLTSPDSSSANMYGHMGETSTATVDGASYTFYRPKLAAETDSEDRTASINNETWAQFNWGHADAHCDILPDARQLEGLK
IARGDLATTLGWPVGLTSGDEEYWSSSQGSTATDHISIDMRSRALTQMPDATQSLVSCVDKAPPAVTPKLVISADNFDST
VNAAKVKVGEEINMKITVTDSATNKPLPYRYFNVYLGDEQNRQNQKNADIDSGHQWTDDPVIITNLEGSDGHYHGVTDAN
GQFSLVLTQDKGAGVLTPVRVVLFDGTEATQNVIFTVVTSPDVAQARMWGHMQGVVEAGNIYKRPLLADEAAQDTGSEFE
NNEYWATFNSVTAATNQCGTGQVPGQLLLDTLYQAHSGNAMETTYGWPTQKHSYIAADTDGSTTAHVNLATGADSTFSGT
EPNYLSCSGNELVTSLDVYFNGDESLRNAVAKVGEQITMNVHSVNALNGLSVPNASFTVTMSHGKNRDNATTGFTDPSDG
TLVMGGTPFGSSQASMTYQGMTDAEGNATLVIEQPQGVGLLTPLSVLPVNSLITTPVNRSVKFTVATSPDTPEAQMWGHM
ADTLTVGDMKFQRPKLAAEATAATRTQEQDNETWARVSHADALNNPNAGGCEAGHLPRADQLAALYASSDGNKIHTVSGW
PTEYDYWSSTFASAATWQAVSLAAGGYTASGDASDYVSCLVSKNPTAASITIEPVNAALWYNANSEHAVKVKKGDTLQLK
VTVKDASGNPLPQAPFVLSRGDGYTRQGEKHIAGSGDGIVSAVVIDGDSLNDTATKIGGMTGENGSKIINVTRPDTHGTK
VAITAALYDNASATASIDTIFTVVTSPDSDKAKMWGHMPETTTAANGEVFKRPLLSAEIASGVTHGDNTENNEAWGIVDF
EMANDACGAGYVPTLADMQSLYDARPGGAMNTQQGWPLDGKNYQDSTADLSRSTQNRYVKSINLRDGGVGSLLWNEQLYF
VCLQNAHPAATQITLTSPVYNDSDGFAKAKVGETIPVIITTRDAQGNPAADTPVIFTRGDSVGRANQEVNSSAAADIQIN
HSDGRSSGANYYTATGADGTLTLNISQDSGAGFKTPLTAAIEHNGVTSAPLPVIFTVVTSPDTPKANYWGHMAETLTDSS
GVAYRRPLLASEFSATPGKTLTIANGYYDKGETWGMITVDKAWNGTGGGCGRDTLPTVANLQTLYGTYPDNAMRSRNGWP
MTSSGNNNVSRYWWAGDYVISSDGTKSLYAAVNLFNDGNDVKTTTSTSMYYMQTCLASPRSAAASLTLTLAGQDETTGSA
KAKKGEQMAATIDVKDAAGQPMKNVMVKISRGSSYNRANSATSSSSITDDITLRNVMPSGLATYLLDTSAKYLYAQTDAQ
GQVTFTLAQDSTAGLKTTISAATMDGSNLTDSKDAIFTVVTSPDSDKAKYWGHMPETFTNSKGVEFKRPLLRAELSSTAD
TSGYTENNETWYTWSRYPNMYQDTASPCDRLGLPTVNDLQTLYTDYPNGALTTTLGLPVASGKYWGAGNSVPDATHSDSQ
FQYVRLSDNNTLTTKANTATAQLCLAKRRDLSIELTSSDMDADKGAPVAKKGESLPLTVTVRDGSGTPQPNTAIRLGRTL
SIDRAGVVDGSSGGGRYSHRLRRLRAQ