PAI Gene Information


Name : tnpF
Accession : AAD44739.1
PAI name : SHI-2
PAI accession : AF141323
Strain : Shigella flexneri 2002017
Virulence or Resistance: Not determined
Product : TnpF
Function : -
Note : similar to 34.4 kDa IS2 hypothetical protein
Homologs in the searched genomes :   611 hits    ( 598 protein-level,   13 DNA-level )  
Publication :
    -Moss,J.E., Cardozo,T.J., Zychlinsky,A. and Groisman,E.A., "The selC-associated SHI-2 pathogenicity island of Shigella flexneri", Mol. Microbiol. 33 (1), 74-83 (1999) PUBMED 10411725.

    -Moss,J.E., Groisman,E.A. and Zychlinsky,A., "Direct Submission", Submitted (07-APR-1999) Microbiology, NYU Medical Center, 540 First Avenue, New York, NY 10016, USA.


DNA sequence :
ATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCCAC
GTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTG
TTTACCGGCTCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGC
AGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCG
TGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTGACTACCGGCGGCTTCAACAGTGAAACAG
TACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGAT
AATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCG
TAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAG
ACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTAT
CGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAG

Protein sequence :
MDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTG
RVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTD
NGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGY
RSPREYLRQRACNGLSDNRCLEI