PAI Gene Information


Name : tciR1
Accession : AAO17205.1
PAI name : tcd island
PAI accession : AF346500
Strain : Photorhabdus luminescens TTO1
Virulence or Resistance: Not determined
Product : TciR1
Function : -
Note : putative LysR-family transcription regulator
Homologs in the searched genomes :   2 hits    ( 2 protein-level )  
Publication :
    -ffrench-Constant,R.H., Bowen,D.J. and Waterfield,N.R., "Direct Submission", Submitted (19-JAN-2001) Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK.

    -Waterfield,N.R. and ffrench-Constant,R.H., "Direct Submission", Submitted (22-AUG-2002) Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK REMARK Sequence update by submitter.

    -Waterfield,N.R., Bowen,D.J., Fetherston,J.D., Perry,R.D. and ffrench-Constant,R.H., "The tc genes of Photorhabdus: a growing family", Trends Microbiol. 9 (4), 185-191 (2001) PUBMED 11286884.

    -Waterfield,N.R., Daborn,P.J. and ffrench-Constant,R.H., "Genomic islands in Photorhabdus", Trends Microbiol. 10 (12), 541-545 (2002) PUBMED 12564983.


DNA sequence : 
ATGAAAACAAGAGGGTATGTGATGATATTTTGTTCAAAGCAACTAAAGTATTTTATGGAATCAGCTAAGAAAGAGTCATT
CACGTTAGCAGCGGATACGCTTTGCATTACCCCCTCTCCACTTAGCAGGCTTGTATATCAACTGGAACAGCGTGTAGGTT
GCCAATTATTTGAGCGATTACCGGGAAAAACCAAGCTCACAGAAGAGGGTAAGGCATTATATCAGGAGTTGTTGCCATGT
TATGAAAGGATTCAGAAAGTTGAAGATAACTGGAATTGTCGTCGAAATTATAAATTATCAAACAGAGACAAACTGGTTAT
TGGCACAAGTGGAGAATATGTTAATAAGATATCTACAGTCGTAAAAAGAGCGGTGCAACGCTATCATTACCGCGATATTT
GTATAATCAACAATTTTCTCATTGATGATTTAATAAGGCAAGACGCGGTATTTTCTTCCTTAATAAAAGGGGATATAACG
GTTTATGTGACTACGGAATGTTATCCAGATAATGATGATATTATCAGGATAGATGGTGCTTATCAAAAGCTGTCTCTTGC
CGTATCCAATGATATTTTGGAAGCAGAAAGTCATGCGGATGAAGTAATATATAGTTTTCCTTTGGTTCAGCATAATAGTG
CCTTTTTAAAACAGTGCGATAATTTCATGCCATTGAATTATCTGCCTGAATACCAGAATCTAGCGTTATTGACGGTGCCT
GATTTTACTAATAGATTAGATCTGGTAAAAGCGGGTGTCGCGATAAGTTTAATGACTCCTAATGAAATGCGCTATTCTAC
CCATATTGATAAAAGTATAGCGTTTCTGAATTTTGAATCACGTCCAGCACCATCGGTAAGGTATTGTGCTTATGCGCTCA
GAAATAAATATAAAGAGCCATTAAATTCATTAATTTCTGATTTGATATTTTAG

Protein sequence : 
MKTRGYVMIFCSKQLKYFMESAKKESFTLAADTLCITPSPLSRLVYQLEQRVGCQLFERLPGKTKLTEEGKALYQELLPC
YERIQKVEDNWNCRRNYKLSNRDKLVIGTSGEYVNKISTVVKRAVQRYHYRDICIINNFLIDDLIRQDAVFSSLIKGDIT
VYVTTECYPDNDDIIRIDGAYQKLSLAVSNDILEAESHADEVIYSFPLVQHNSAFLKQCDNFMPLNYLPEYQNLALLTVP
DFTNRLDLVKAGVAISLMTPNEMRYSTHIDKSIAFLNFESRPAPSVRYCAYALRNKYKEPLNSLISDLIF