PAI Gene Information


Name : cag9 (HP0529)
Accession : AAR03892.1
PAI name : cag PAI
PAI accession : AY330639
Strain : Helicobacter pylori 2017
Virulence or Resistance: Virulence
Product : Cag9
Function : -
Note : cag-W; jhp0478; orf16; virB8-like protein
Homologs in the searched genomes :   46 hits    ( 45 protein-level,   1 DNA-level )  
Publication :
    -Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates", Gene 328, 85-93 (2004) PUBMED 15019987.

    -Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Direct Submission", Submitted (26-JUN-2003) Biotechnology, Royal Institute of Technology, Alba Nova University Centre, Roslagstullsbacken 21, S-106 91 Stockholm, Sweden.


DNA sequence :
ATGAAAAGGACTTTTTTAATAACGATCATAAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGATTTGCCCAT
TGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAAGTTTTGCAG
ATATTTTGACAGGCTATACATCTATTGGTGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAAGCGCTTAGC
ACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTAGTGAAATATTTGAATACTTTAGGTCCTTTATGGGGATCGGCGTG
GGCAAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACGCCATCAAGTGGCTGTAATTTTGGTTGGAACGCATTGATAA
ATAAAAACATAGATGTATCCATGGATAGCGTGCTAGACAATTTGAGCAACAAGATTCAGAATTTTACCAAAGGCGGTGTT
GAGGACAATGTGAAAGGCAATATTCTTTTGCAAATAATTGGCTCAATAACCGCTCAAGCTTCTACGAATATTACAGCTGA
TGGTTTAATTTGGCTGATTGGTAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTGCTTTTGCCG
CATTAGAATCTGTTGTCAAAGGAGCGGACGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGATATTATCATA
GGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATCTATATTGTTTTTGGGATTTTTGTTTTTATTTCTTTTATGAA
ATTGAGGGATATTTCAAATGGCATTCAGATTAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACATTATTCAAAA
TGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCTATTTATTTTGGTTTAGCA
GGCGCTTTTGGGCTGAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAATTTTACCTGC
GGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGCTTGTTACAAGGCTTGCAAGTGGCAGGTATTTCTTTAT
TCGCTATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGGGCTTTTAGC
GGTATTGTGTTCCCTATTGCAGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATTGATATGGTT
TATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCATTCAATTTGA
CCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGACTAGGTATCGATTCAACTATTGCGAGTTTGATCACT
CTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTGTCAATGCGATCGTTAATACCATTTTCAGCTCTGTCTC
TATGGATGGTAGCAGAATGGATAGAGAAAGAGATGCCTTAATGGTTGGAAGAGTTGGTGGATCTATGTTTAAAGGATAA

Protein sequence :
MKRTFLITIISFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIEALS
TPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSVLDNLSNKIQNFTKGGV
EDNVKGNILLQIIGSITAQASTNITADGLIWLIGKEFTANKLQNNTTAMLAFAALESVVKGADAAVLPAYGVVNLPDIII
GQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYFGLA
GAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAGAFS
GIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIASLIT
LFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMVGRVGGSMFKG