Name : secD
Accession : AAT96103.1
PAI name :
PAI accession : AY597276
Strain :
Virulence or Resistance: Not determined
Product : SecD
Function : -
Note : PAI-R1-ORF10
Homologs in the searched genomes : 628 hits ( 628 protein-level )
Publication :
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.
| DNA sequence : |  |
ATGCTGAACAAATACCCTCTGTGGAAATACGTACTGATCCTGGCGGTGCTGGTGGTCGGTTTTATTTATTCCGCACCCAA
TCTCTACCCTGACGATTCGGCCATTCAGATCAGTGGCGCAAGTACTGCGTTGCAGGTCACTCAGGCAGATGTGGATCGTG
CAGCCAAGGCGCTGACTGATGCCGGTATCTCGGTCAAGGCTTCTTCTCTGGCTGAGAATGGCAAAGGCGGTTTGTTGCGT
CTGAGCAAGCAGGAAGACCAGTTGCCGGCCAAGGATGTCGTGCGCAAGGCGCTGGGTGATGACTATGTCGTCGCGCTGAA
CCTGGCTCGCACCACGCCGAACTGGCTGCGCAATGTTGGCGCAACTCCGATGAAACTCGGTCTCGACCTGTCCGGTGGTG
TGCACTTCCTGCTGGAAGTCGACATGGACAAGGCAATCGATGCCCGTCTGAAAGTCTACGAAGGCGAAGTCAAAACGCTG
CTGCGCAAGGAAAAGGTGCGTTATCGCAGCCTGCCGCAGCTGGGTAATGTGATTCAGCTGGGCTTTACCGACGACGCAGA
GCGCGAGCAGGCTCGTGCGCTGGTACGCAAGACCTTTACCGATTTCGAAATCACGCCTGCCGAACTGAACGGGATTCCCG
TACTGCGCATGGCGCTGACGCCGGCCAAGCTGGCCGAGATTCGTGAATACTCCATCAAGCAGAACCTGACCACCGTACGT
AACCGGGTCAACGAGCTGGGTGTTGCCGAGCCGCTGGTTCAGCGTCAGGGCGCCAACCGCATCGTGGTCGAACTGCCGGG
CGTGCAGGACACGGCTGAAGCCAAACGTATTCTGGGCAAGACCGCCAACCTCGAATTCCGTCTGGGCGCAGGTCCCGAGG
ATTCGAAAGGCACCACCGAAATGTTCGAATTCCGCGAAGGCGGACGTCCGGCGGCAGCGGTGGAGCGTGGCCTGATCATC
ACCGGTGACCAGGTAACCGACGCCAAGGCGAGCTTCGACGAGCATGGTCGTCCACAGGTGAACATCAACCTTGATGGTCA
TGGTGGCGAGCTGATGAGTCGTGCAACCCGCAGCAACGTGGGTCGCAGTATGGCGGTGATTTTCATCGAGCAGCGTCCGA
CCACCACCTACACCAAGCAGATGGTCAACGGCGTCGAGAAAGACGTGCCGGTCCAGACGTTCAAGGAAGACAAGAAGATC
ATCAGCCTGGCGACCATCCAGTCGCCACTGGGCAGCCAGTTCCGTATTACGGGCCTGAACGGTCAGGGCGAATCGTCCGA
GCTGGCGCTGCTGTTGCGTGCCGGTGGTCTGGCCGCGCCGATGTACTTCGCTGAAGAGCGCACCATCGGTCCCAGCCTGG
GTGCCGACAACATCACCAAGGGTGTCGACGCTTCCCTGTGGGGAATGCTGTTCGTGTCGCTGTTCATCATGGCCATCTAC
CGTTTCTTCGGCCTGATCGCTACCGTGGCGCTGGCCTTCAACATGGTCATGCTGCTGGCACTGATGTCGCTGCTGGGTGC
AACGCTGACCCTGCCGGGTATCGCCGGTATCGTGCTGACCATGGGTATGGCGGTGGACGCCAACGTGCTGATCTTCTCGC
GGATACGTGAAGAGATCGCCAACGGCATGACGGTTCAGCGCGCAATCAGCGAAGGTTTCGATCGTGCCTACACGGCGATC
CTCGACGCCAACCTGACGACGCTGCTGGTCGGCGGCATTCTCTTCGCAATGGGCACAGGCCCGGTGAAAGGGTTTGCGGT
GACCATGTCGCTCGGGATCTTTACCTCGATGTTCACAGCCATCATGGTGACCCGCGCAATGGTCAACCTGATCTATGGCG
GTCGTGACTTCAAGAAGTTGTGGATTTAA
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| Protein sequence : | |
MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGISVKASSLAENGKGGLLR
LSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKTL
LRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPEDSKGTTEMFEFREGGRPAAAVERGLII
TGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEDKKI
ISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY
RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAI
LDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI
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