PAI Gene Information


Name : unnamed
Accession : AAT96115.1
PAI name :
PAI accession : AY597276
Strain :
Virulence or Resistance: Not determined
Product : putative short-chain type regulator
Function : -
Note : PAI-R1-ORF84
Homologs in the searched genomes :   1147 hits    ( 1147 protein-level )  
Publication :
    -Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.

    -Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.


DNA sequence :
ATGACGAGAGGTGAATTTTTTTCATCGACCAGTGATGGTTGCGTTATTGCTCGCGGGCAGCACCGGGAACACTCTGAGCC
CATCGATCACTCGAATCGAACCCATAAAAACAATCAGAGGACTCCCCTCATGCTGCTTCAAGGCAAAATTGCAATCATCA
CCGGTGCTGCCTCCGAACGTGGAATCGGCCGCGCCACGGCTGTCACGTTCGCGCAACACGGCGCACGCGTCGTGATCCTC
GACCTCGATGAATCCGCCGCACGCGACGCTGCCGCCACGCTGGGCGAAGGTCATCTGGGCCTGGCTGCCAATGTGGCCGA
TGAATCCCAGGTCAAACAGGCCGTTGCAACGATCATTGAGCACTTCGGCCGCATCGACGTGCTGGTCAACAATGCCGGCA
TCACCCAACCGATCAAGACACTGGACATCCGTCCCGGCGATTACGACAAGGTGCTGGACGTCAGTCTGCGCGGCACACTG
CTGATGTCGCAGGCGGTCATTCCGACCATGCGTGCGCAAGGCTCGGGCAGCATCGTGTGCATGTCGTCGGTCTCGGCGCA
ACGTGGCGGCGGCATCTTTGGCGGGCCGCATTACAGCGCGGCAAAAGCCGGCGTGCTCGGCCTGGGCAAGGCCATGGCCC
GGGAGTTTGGACCGGACCAGATTCGCATCAACTCCATCGCGCCGGGCCTGATTCACACCGATATCACCGGTGGGTTGATG
CAGGACGAGCGACGCCACGCGATCATCGAAGGCATTCCGCTGGGTCGCCTGGGTGCCGCTCAGGACGTGGCCAATGCCGC
GCTGTTTCTGGCCAGTGACCTGTCTTCCTACCTCACCGGCATTACGCTGGATGTGAACGGCGGCATGCTGATTCACTGA

Protein sequence :
MTRGEFFSSTSDGCVIARGQHREHSEPIDHSNRTHKNNQRTPLMLLQGKIAIITGAASERGIGRATAVTFAQHGARVVIL
DLDESAARDAAATLGEGHLGLAANVADESQVKQAVATIIEHFGRIDVLVNNAGITQPIKTLDIRPGDYDKVLDVSLRGTL
LMSQAVIPTMRAQGSGSIVCMSSVSAQRGGGIFGGPHYSAAKAGVLGLGKAMAREFGPDQIRINSIAPGLIHTDITGGLM
QDERRHAIIEGIPLGRLGAAQDVANAALFLASDLSSYLTGITLDVNGGMLIH