Name : avrE
Accession : AAT96218.1
PAI name :
PAI accession : AY597278
Strain :
Virulence or Resistance: Not determined
Product : AvrE
Function : -
Note : PAI-R1-ORF72
Homologs in the searched genomes : 3 hits ( 3 protein-level )
Publication :
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.
| DNA sequence : | |
ATGCAAACACCCTCAATCAATCGGACCACCGCAAACGCGGTACAGCCGCAGACACATACGTCATCTGGCACGGCTACCGA
TGTCCGGCAACACGCCAGACCAGTGAGCCAGCAAGCGTCCCATTCGCTCGGCAGCATTGGCAAGAGGATTGCCAAAAACG
TCGGCAAAATGTTTCAAAAACCCAAGCCCCCTCGCCAGATCGTTGAAAACCAGCCCATCGCCGGAGCGCCTCTCAGATCT
GCCTCGAAAAAACCATCAGATGACCCGCTGACGCAGGCGGTGCAGTCGTCGGTGCCTGTACGTAATGTTCGTTTCGACTT
GCCTGAGGATCCGGTGGAGCAATCCAGTGGCTCGACCGGGCCAAAAGGCCCAAAAGGCAAGGGAAAAGCCGTTGAAGATA
CGAGCCTGACGCAAGAGTCAGAAGACCACCTTAAAAGCGACGATGACGTGCGTCAGTGGCCGCTACGCTCTCGTCAGAAC
GAAGCAAGTTCTTCGGGCACCACCGCGAATGAAACCATAGAGCCATTTGCGCCGCAGCCCGGCAGCCTGAGCCGCAGTAA
AGCCGGACGTTTTGACGGACCGGCCGAAGAGCTGGTGCGGGCCGGTCAACAACAAAGCGCAGTTACTCTGGATACAAAAG
GCAAACCGGACTTTTCAGCATTCCAGACACCCGGAATGGCACCCTTGCTGGACCAGATCCTCGCGAATGGCAAACAGACC
TATCTGGCTTTACACAGTGAACCGGGTGCCGAGAACCATCTGTTGCTCGAGTCGAGCGGACATCTGTTGCACATGACGCA
AAACGATGTGTCGCTGGCGGTGATTCGCAGCAGCCAGCAAACGCCTGCAGCCGGAGCCCAGAAGCATGCCGATGTCGGTC
TGGAAACGAATGCCGGTCAGGCGCTGGTCACGGTCAATGGCGAAAGCGCAACACTCCAACTTCCGGGCAAAGCCCACCTG
GCACAGATTACGGGCGTTCACCGCAACCCTGACGGTGAACAATTGCGCGTACATGAAGACCGGTTGTACCAGTTCGACAC
CGTCGCCCTGCGCTGGAAAATCCCTGAAGGTAACGAAGACAACGTCTTCAACAGCCTGACAACCGGCGGCAACGGGTCGA
TCTATGCAAAAAGCGACGACGTCGTCGTTGACCTCTCCAGCATGGAAATGCCGCACCTGGAGGTAGGCGAACTTCAATCA
TTTTCGGTCGCGCCAGACAACACGGTTGCCTGTCTGAGCGGCAAAGACACTCAGACGCTTCTGGTGGCAGACATGAGTCC
GGGCATAGGCGGCCCACGGCATCAGAAGACGCTCAAGCTTGATGGGGGCAATGCACAGGCTGCATCGGTTGGATTGAGCG
CTGACCATCTGTTTATCGCAGATACCCAAGGCAGGCTTTACACAGCCCCGCGCGATGCGCTCAAGGATGACGCCCCCCAG
TTGAGCCTTGAGCCTGATCAGCAGTATCTACTTGAAGGCAAGCCGCCCGGCGGACACGACAAAGTCACCGGGTTTATCAG
CGGTGATGATGGGCGCGTACATGCGCTGGTCAAGAATCGTCAGGGCGACGTTCATTCACATGCGCTCGACCCGCAAAGGT
CGCGGCTGGAGAGCGGCTGGAACCTGACTGAAGCCCTGGCGCTGGACAACACCACCGGCATGCCAACGGTTGCGCCCCCC
GAACCCGCCGCACGACTCAACCTTGACCGTTCGGGCCTGGTTGGCCTCAGCGCCGGTCGCCTGCAGCGCTGGGACTCAAC
GCCCCAATGCTGGAAAGACGCTGGAATCAAAGACATCGATCAACTGCAACGCGGTGCCGACAGCAACGCCTATGCGCTCA
AGGGCGGGAAACTCCACAAGCTGACCGTCAGCCCCGAGCATCCCAATATAGTCTTCGGCGCCCACACATCGCTGGCCCAG
ACGGCGCGCTCTACCAAGGTGGAACTGGGCACGGAGATCGAAGGGCTTGAAGGCCGGGTCATCACCGCCTTCGCAATGGT
CAGCGACAAACAGTTCGTCGCGCTTGACGACGAGAAAAAACTGACCGCCCATCGAAAGGACGGCGAGCCGGTCAGCTTCA
CTCACGAAGGATTGCAAGGCGATATCAAAACCCTGTCACTGGACGAAAAGCACAACCTTTATGCCCTCACCAGCACCGGT
GGGCTGTTCCGTATGTCCAGGCAGGACTGGCAGGCGACCCGCCTGTCGGATCTCATGAAAGCCAAGTGGAACGCAGTCCC
TGCACCTGATGGGAGGCCTGTCAAGGCGCTGTTCAGCAATGATGACAATATGCTGAGCGTGCAAGTCGAGGGGGCTGCGG
ATCAAAGCCTGATGCGCCTGAAGGGCGGTGAGTGGAAAACGTTTACGCAACGCCCTGTGGAAGAAAATGGCCTGAACGAC
ACGCATCAAAGAATCAAGCGATCACACAAGAACTGGCGCATCCCTCTCACCGGACTGACTGTGAAACATGAGACAAATAT
AGGGGGGCGCGGCGGCATGGAGAAAAGCCATCGTGCGCCTGCCCGGGAATTCATACGCGCCAACATCTGGAAGAACACCC
TGGAAACACCGCGCTGGATGAAGAACGTCGGCAACCACATACAGCATCGCTATCACGGCCGCGACGGTCTCATGGAGCTG
TACAAGAAAGAGTTGATCGTGTTCAAGCAACTGGAGCTTATCCACGAGGCGGAAGGATCGGTGCCTGCGCCGGGCAAGGA
CCTCAAGACACGTATCGAGCAACTGAAAAACCTCGGGCCTCGAGGCGAAAAACTCGTCAAGGATCTGGAGTCGCTGCGCA
AGGAACTGGAGGATCACAGCCATACAGCCCTGATTGCTATCGGACAAAGTTTCGGCACGGTGAAGAACCTTCACCAACAG
GACGGTGTCCTCAATCAGCACGGAGAGCTGGCGAAATCGACCCGGCGTCTGAAACTGGGCAAGAAGCTTGAGAGCCTGGG
TAAAAAGCTCAACTTCAAGAGTTCTGGCCACAATCTGATCAAGGAGCTGGATAACGCTCTGTCCCGCATCGCCCCCTCTC
CCGCAAGCCCGACCGCCGAACTGCTCAAGACGCTCAAGGACAATGGCGTGAAAATCTCACACCAGAAAACCGACATGCCG
CTGGGCCAGCGTCGCGATGCCGGCGAAGAGCAAGGGCTGAGCAAAGCCCGCCTGGCGCTTGATCTGGTAACGCTCAATGA
ACTGGGGAAATTGCTGGACCAGGCGGAATTGCTCACGCCCCAGAACGACCTTTCTGCCCTGGAGCAAAAGCTGGCAACGC
TGCGCGATACAACCTATGGCGAAAACCCGATCAAGGTCATGACGGATATGGGCTTTACGGACAACGCAGCGTTGGAGACA
TCCTATGACTCGGTCAAAACATTCCTGAAGGCGTTCAAGAAACCCGACCACGCGGTGAGCGTCAACATGCGTGCGGCGAC
CGGCAGCAAGGACCAGATTGAACTGGCTGACAAATTCAAGTCCATGCTGAAACAGCTCGAACACGGCGACGATGAAATAG
GCCTGACTCGCAGTTATGGCGGCAATCTCACCAGCCCGTTCGTCATTCTCGCCGACAACGCGACAGGGCCATGGCCGACA
GCTGGCGCAACGGGCAACCGCAACTATATTCTCAACGCCGAACGCACCGATGGCGGCATTACCCTTTACCTGATCAGTGA
GGCGGCAGGCAACGTCAGTGGCGGAGTAGGTGGGGGCAAGGATTACTGGCCGGCCTGGGTCGACGAAAACAACCCGGCGA
GAAGCGTCGATATCGGTAACGACCGCAGAATGAACCCCGGCTTCCGTCTGGGTGGCGAGCTCACCGCCACTGCTGCGGGC
AGCCAGCGCAATGGCGTGATCTTCAACGTGGCTGACGAGAACATCGACGCGTTCGTTGACGACCTGTTCGAAGGCAAACT
GAACCCTCTGCAAGTCATGAAGAAGGCAGTGGATCATGAGACCTACCAGGCCCGACGCTTCAACTTTGACATCACTGCAG
GCGGCACCGCCGAGTTTCGCCTCGGCTTCGACATTTCCGAGCAGGACAGCGATCCATTGTCTGCGGTGGCGCGCCTCGGC
GTACTTGCCAATGTCACGGTCAACCTGATGTCTTACACGGACTACTCCCTGACGCAGAAAAACGAAAAAACCGAGCTGCG
CGAGGGTGGCAAGAACCGCCCACGCTGGCTCAACAGTCTGATGATGGGGTTGCAGGGACGAACACAACTGAGCGGCACGC
ACACTAACCCGACTTCGACACCTGCCTCAGCCCCCGGCCCGACACCGGCCACCCAGTCTGCTGCCAACAACGTGGGCATC
AACGCGACCGTCTCGGTAGAAGACAGAACCGTCAAACGGGTCAAATTCCGCTACAACGTGGCGACACCGATGACGGCCAA
GAGTCTGGACAAACTGTCTGCCAGCCTGGGCAAAACCTTCCCGGACAACGCCACGAAAGCCAGCCTGGCCGAACTGGCCA
AGCTGACTGAAGCTGCGTCCGGCGAAGCCCCGGACGCCGCCGTCAAGGCGCGGCTCGACGGACTGAAAGCGCTGTTCGCT
GACAAAACATCGCAAAACGACCAGCAATACAAAGCACTGCGTGATTTGAAGCGCGCCGTCGTTCAACATGAGTCATCGCT
CAAGAAGCACAGCGTATTGGACAACGCCCGTTTCGAAACCAGCAAGACCAATCTGTCAGGGCTGGATTCAGAGAGCATGC
TCACCAAAATCATGAGTAGTGTCAGAACGGCCAGCGCTCCGGGTAACGCGGCCAGAGTTGCCGAATTCATGCGCAAGGAT
CCCAAACTCCGCGCCATGCTCAAAGAGATGCAAGCCAGTGACGGAACGCTGGCCCGTGTACGCCTGGAGCCCAAGGATTC
GCTGATCGACAGGATCGACGAAGGCAGCCTCAACGGCGACATGACCCAGAAAGAGCTTTCCGGACTGCTCGAAGATCGCA
ACCAGATGCGAATCAAGCGTCTGGTCGTTTTTCACACCGCCACCCAAGCAGAGAACTTCACCTTGCCGACGCCACTGGCC
AGCTACAACAGTGGCACTTCCCTGAACGTCACCAAAGTCTTGGGACGCGTCAACTTCATCTACGGCGAAGATCAGGACAC
ACCGATTGGCTACACGTTTGACGGAGAGTTGTCGAGACCGTCGCAATCGCTTAATGAAGCTGCCGACCTGCTGAAGAAAC
AAGGGTTTGAATTCAAGACCTGA
|
| Protein sequence : | |
MQTPSINRTTANAVQPQTHTSSGTATDVRQHARPVSQQASHSLGSIGKRIAKNVGKMFQKPKPPRQIVENQPIAGAPLRS
ASKKPSDDPLTQAVQSSVPVRNVRFDLPEDPVEQSSGSTGPKGPKGKGKAVEDTSLTQESEDHLKSDDDVRQWPLRSRQN
EASSSGTTANETIEPFAPQPGSLSRSKAGRFDGPAEELVRAGQQQSAVTLDTKGKPDFSAFQTPGMAPLLDQILANGKQT
YLALHSEPGAENHLLLESSGHLLHMTQNDVSLAVIRSSQQTPAAGAQKHADVGLETNAGQALVTVNGESATLQLPGKAHL
AQITGVHRNPDGEQLRVHEDRLYQFDTVALRWKIPEGNEDNVFNSLTTGGNGSIYAKSDDVVVDLSSMEMPHLEVGELQS
FSVAPDNTVACLSGKDTQTLLVADMSPGIGGPRHQKTLKLDGGNAQAASVGLSADHLFIADTQGRLYTAPRDALKDDAPQ
LSLEPDQQYLLEGKPPGGHDKVTGFISGDDGRVHALVKNRQGDVHSHALDPQRSRLESGWNLTEALALDNTTGMPTVAPP
EPAARLNLDRSGLVGLSAGRLQRWDSTPQCWKDAGIKDIDQLQRGADSNAYALKGGKLHKLTVSPEHPNIVFGAHTSLAQ
TARSTKVELGTEIEGLEGRVITAFAMVSDKQFVALDDEKKLTAHRKDGEPVSFTHEGLQGDIKTLSLDEKHNLYALTSTG
GLFRMSRQDWQATRLSDLMKAKWNAVPAPDGRPVKALFSNDDNMLSVQVEGAADQSLMRLKGGEWKTFTQRPVEENGLND
THQRIKRSHKNWRIPLTGLTVKHETNIGGRGGMEKSHRAPAREFIRANIWKNTLETPRWMKNVGNHIQHRYHGRDGLMEL
YKKELIVFKQLELIHEAEGSVPAPGKDLKTRIEQLKNLGPRGEKLVKDLESLRKELEDHSHTALIAIGQSFGTVKNLHQQ
DGVLNQHGELAKSTRRLKLGKKLESLGKKLNFKSSGHNLIKELDNALSRIAPSPASPTAELLKTLKDNGVKISHQKTDMP
LGQRRDAGEEQGLSKARLALDLVTLNELGKLLDQAELLTPQNDLSALEQKLATLRDTTYGENPIKVMTDMGFTDNAALET
SYDSVKTFLKAFKKPDHAVSVNMRAATGSKDQIELADKFKSMLKQLEHGDDEIGLTRSYGGNLTSPFVILADNATGPWPT
AGATGNRNYILNAERTDGGITLYLISEAAGNVSGGVGGGKDYWPAWVDENNPARSVDIGNDRRMNPGFRLGGELTATAAG
SQRNGVIFNVADENIDAFVDDLFEGKLNPLQVMKKAVDHETYQARRFNFDITAGGTAEFRLGFDISEQDSDPLSAVARLG
VLANVTVNLMSYTDYSLTQKNEKTELREGGKNRPRWLNSLMMGLQGRTQLSGTHTNPTSTPASAPGPTPATQSAANNVGI
NATVSVEDRTVKRVKFRYNVATPMTAKSLDKLSASLGKTFPDNATKASLAELAKLTEAASGEAPDAAVKARLDGLKALFA
DKTSQNDQQYKALRDLKRAVVQHESSLKKHSVLDNARFETSKTNLSGLDSESMLTKIMSSVRTASAPGNAARVAEFMRKD
PKLRAMLKEMQASDGTLARVRLEPKDSLIDRIDEGSLNGDMTQKELSGLLEDRNQMRIKRLVVFHTATQAENFTLPTPLA
SYNSGTSLNVTKVLGRVNFIYGEDQDTPIGYTFDGELSRPSQSLNEAADLLKKQGFEFKT
|
|
