Name : unnamed
Accession : AAT96220.1
PAI name :
PAI accession : AY597278
Strain :
Virulence or Resistance: Virulence
Product : HopPtoM-like protein
Function : -
Note : similar to Pto DC3000 HopPtoM; PAI-R1-ORF74
Homologs in the searched genomes : 2 hits ( 2 protein-level )
Publication :
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.
| DNA sequence : | |
ATGATTAATTCACGCGTAGGGGGATCAGGCGACATACAAATGGTTGCGGTGAGAACGGAGGAGGGTAATCCGTCCATTAC
CTCTGCTCACCCGAATGCGGTCACTCCCAGCAACAATCCCCCGTTACTCCCAAGGCAAATGGGTCAACACCTTGAGCCCT
CTCTGGAGTCGCATGCGGCGAACCTGGGTATAGCGTTGCGCCACACTGAGTTGCTGGCGACGTTTCAGGCTGAGCAGGCG
AGCACACGCTCAACCGATGCACCACAGGTCAGTGCGCATGCGGCGCTATTGATTGGAGGCATGCTCGAAGAGGCCAACGG
TCACGCTTCCGAAACCGGCAAGGTGGGCTTTGAGGTCATGGCAGAGCGCTTGTGCGGGCCGCACCTTGCGCTGGAGAGTT
TCCAGTCCAGTGACGTCAAACTCCTGCTCGAGAAGCTCACTAATAAGGACGAGATACCGGACAAGGCAGAGGTCGGGCAA
CTGCTCAAAGGCCATGCCGGTGCGATCGCCGATCAACTTGAGCATTTTCAGCTGATGCACAACGCTTCCAGCGTGCACCA
AGGTGAATGCTCGGCTCCCGACCGAAAGACCTTTGAAGTCAGCCAGGCTGCGTTGGGCGAATACGCTGGACGTGTGAGCA
AAGCGATTTCCAGCGTACTGAGCGAGAAAACTGCAGATCTGGACAAGCGCCTTGCGGACGTGGACAAACAGCTCGAGGGT
ATGGCTGAAGGCGGGGAAAAATCCAGACTTTTGACCCAGAAAGAGACGCTTGGCGAAGCCAAAACCATGCTGGCCGACAT
TCAGAACGATTTTTCGAAATCGCCTCAGGCAAAGCATCTGAAATCCGTTGCTGCTCATGCGCGATTCGACGCGCAGCTCA
AAGAGCTGAACGCGGATCGTGCCGGAATGGGATTTCTGCAAGGCTCGGGACGGGTCATAGCCGCTGCGATTCCCCAGTTT
CTTTCATCAATGACGCACTTGGGCTTTATCCGCTCTGCCACCAACGATGAGTTCAGAGCGGCGGTGCCAGGCTCAAGCAG
CGACGCCAGTATGCTGGAAGCCACTGTGATAGGGCTGGTCGCAGGGATCGCTCATGAAGGCGTCACCAACCTGGTGAAGC
CGATGGTGCAATCCGGCTTGCAGGCGTCAGGCCTTGATAAGCGCCTGGGCATGGCGCCGCTCAAAGGCGTCGATACCGAA
TCGGTGATTCCTGATCCGCTTGAATTCAAGTCGCAAGACGGTGTGATGGTCAAAAAGTCCGACGAGGAACTGACGGCCGA
GAAAGCGCAGGTCAAAGCGCAGCGCGCGGTGTTTGAACAGAAGAAGGTTCAAGTGTCTTCTACGCATCCGCTCGGCGAAC
TGATCCCCTATATGAGTTTTGGCGGCGGTCAGGCAATACGCCAACTGTTGCATGATTTCAATCAGATCAACGGTCAGACG
GTCACTGCCAGGGCGTTGGCTTCAGGGATGGCCGGTGCAGTGTCGGCCTCGGCTCAGGCGCTTTATCAGATGAAGGCCAC
CTACACCGATCCGCAAGGGCGACAGATTCCGGTATTCACCACCGACAAAGCCACCAGTGAACTGGGCAAGGAACTGGCCA
AGGGATTGGACCCGCGCGATGCCACCGTTCGGACTTCGTTCTACAGCAAGGCTGTTTCGGGTATCCAGAGTGCTGCGTTG
ACTGCAGAGCTGCCAGCAATAGCGGCGGCTGGCGTCAATAGTGGGCTGAGTGCAGGCAGGATCGCGGGCAATATGGCTCT
GGCCGCGCTGGGTTCGGTATCTTATTTGTCCTCGCTGTACGCCAATCAGTCGGTTACGGCTGAAGGAAAGGCGTTGAAGG
CCGCTGGCGAGGGCGGAGCGACCCCGATTCTGGAGCGTACCGAAGTCGCGTTTACCAACGTTCGTCGTCCGAACAGAGAG
TCACTCCCGCACACGTTCTCTTCTGATCAGTTGGCAGGCTTGCCTCGTATGGCAGAGAACACCTACCACCGTGCCAGGGG
CGTGTTGCAAGCACCCAGTCAAATTGCTGTCGACGTGCTGCGCGCTGTTGACGATGGCGTGCGCAGCAGCTTCTCGTCGC
TGCAGGATAAACTCACGAGCCAGTTTCAACGCCAGACGACGGCGACGCCACCTCCCCACGAAGCGGCTTTCGACAACCCG
GTCGTCACAGAGTCCGTTGTATCGCCTGAACCTGAGCCAGGGCCAAAAATGATGAACGTTCAGCAGCCGAGAAACGGTGC
GATCGACGACGACGCTTTACGAATGCTCGAAGAGGGGATCCTGCCGCAGACAACGTCGCAGCCACAGCGCACGCCACAGC
AACAACGAACGCCACAGCCGCCACGAACGGCGCAGCCACAGCGTGCGCCTCAGCCCAGGGCGCAACAATCTGCTCCAGTC
GCACCTCCCTATGACCCGCCGCTGGAGGCCATGGAAGCGGGCTTTTTAAAGCCAGCCCCAAGCAATGATCCTTCACGTTG
A
|
| Protein sequence : | |
MINSRVGGSGDIQMVAVRTEEGNPSITSAHPNAVTPSNNPPLLPRQMGQHLEPSLESHAANLGIALRHTELLATFQAEQA
STRSTDAPQVSAHAALLIGGMLEEANGHASETGKVGFEVMAERLCGPHLALESFQSSDVKLLLEKLTNKDEIPDKAEVGQ
LLKGHAGAIADQLEHFQLMHNASSVHQGECSAPDRKTFEVSQAALGEYAGRVSKAISSVLSEKTADLDKRLADVDKQLEG
MAEGGEKSRLLTQKETLGEAKTMLADIQNDFSKSPQAKHLKSVAAHARFDAQLKELNADRAGMGFLQGSGRVIAAAIPQF
LSSMTHLGFIRSATNDEFRAAVPGSSSDASMLEATVIGLVAGIAHEGVTNLVKPMVQSGLQASGLDKRLGMAPLKGVDTE
SVIPDPLEFKSQDGVMVKKSDEELTAEKAQVKAQRAVFEQKKVQVSSTHPLGELIPYMSFGGGQAIRQLLHDFNQINGQT
VTARALASGMAGAVSASAQALYQMKATYTDPQGRQIPVFTTDKATSELGKELAKGLDPRDATVRTSFYSKAVSGIQSAAL
TAELPAIAAAGVNSGLSAGRIAGNMALAALGSVSYLSSLYANQSVTAEGKALKAAGEGGATPILERTEVAFTNVRRPNRE
SLPHTFSSDQLAGLPRMAENTYHRARGVLQAPSQIAVDVLRAVDDGVRSSFSSLQDKLTSQFQRQTTATPPPHEAAFDNP
VVTESVVSPEPEPGPKMMNVQQPRNGAIDDDALRMLEEGILPQTTSQPQRTPQQQRTPQPPRTAQPQRAPQPRAQQSAPV
APPYDPPLEAMEAGFLKPAPSNDPSR
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