PAI Gene Information


Name : hrcT
Accession : AAT96305.1
PAI name :
PAI accession : AY597282
Strain :
Virulence or Resistance: Virulence
Product : HrcT
Function : -
Note : PAI-R2-ORF18
Homologs in the searched genomes :   24 hits    ( 24 protein-level )  
Publication :
    -Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.

    -Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.


DNA sequence :
ATGTTCGAGCCCGCGTTCAAGGAACTCAGTGAAACGATCATTGCACTGACCATCGGCATGGCGCGTCTGTACCCCTGTCT
GTTTCTGATTCCGGCGTTTGCGTTCACCGAGCTCAAAGGCATGCTGCGCCACGCCATCGTGCTGGCCCTGGCCCTGATTC
CGATGCCTGCCATTCGCATGGGACTGACCGGGCATGAGCTCGACTGGCTGGATCTCTGCGCCCTGCTGCTCAAGGAAAGC
GTAATCGGCCTGCTGCTCGGGCTGTTGCTGGCCATGCCGTTCTGGCTGTTCGAATCGATCGGCTGCCTGTTCGACAACCA
GCGCGGTGCGCTGGTCGGCGGGCAGATCAACCCGGCATTGGGCGACAACACGTCGGAGCTGGGCCACATGCTCAAGCAGG
TGCTGATCCTGCTGATGATCCTCGGCGGTGGCTATGCAAGCCTGACGCAGATCATGTGGGACAGCTACCTCGTATGGCCT
GCCACGCAATGGGTGCCGGTGACCGGAGCAGCCGGTTTCGAGGTGTACCTCAAGCTGGTGGCCAGTACCTTCCGCTTCAT
GGTGCTGTATGCCGCGCCGCTGGTGGGTCTGCTGCTGATGATCGAATTCGGCATGGCGATTCTCAGCCTGTACAGCCCGC
AGCTTCAGGTGTCGACCCTGGCAATGCCTGCAAAGAGCCTGGCCGGTCTGTTTTTTCTGGTGCTGTACATGCCCATGCTG
ACGCTGCTCGGCGAAGGCCGCCTGGCCGATCTGAGCGACTTGCGGCATCTGCTGCCGCTGATGCTGCACACCCCCTGA

Protein sequence :
MFEPAFKELSETIIALTIGMARLYPCLFLIPAFAFTELKGMLRHAIVLALALIPMPAIRMGLTGHELDWLDLCALLLKES
VIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELGHMLKQVLILLMILGGGYASLTQIMWDSYLVWP
ATQWVPVTGAAGFEVYLKLVASTFRFMVLYAAPLVGLLLMIEFGMAILSLYSPQLQVSTLAMPAKSLAGLFFLVLYMPML
TLLGEGRLADLSDLRHLLPLMLHTP