Name : avrE
Accession : AAT96307.1
PAI name :
PAI accession : AY597282
Strain :
Virulence or Resistance: Not determined
Product : AvrE
Function : -
Note : PAI-R2-ORF20
Homologs in the searched genomes : 3 hits ( 3 protein-level )
Publication :
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.
| DNA sequence : | |
ATGCTTCCAATCAATAACGCGCCCGTGACCGGACAGGTTCAGGGCACAACCTCCCAGGGTCACAATCCACGCGGGCTGGA
GCAGCGCCCCGAGCCGCCGACCCAGCGCGCCTCGGTGTCGGTCGTTCAGTTGGGCAAGCAGCCCGTACAGGTCCCGGTGA
CGCAGCAGCCCGATATTCCCCCGCGCACCTTCGGCCCGACACCGGGCGCGTTGACGCCGACGGCGGCGCCAGAGCAGACC
GCACCGCAACTGGACGCCGACGATATCGCTCATATCAGCTCGGCTCGACGCCCGCCGGTCACGCGTTCGTCCTCCACAAG
CAGCGAGCGTCCGACAACGGCGCTGCAACGGGAACTGTCGTTCAAGGACTGGCTGCCCAGCCAGGAAAGCTCACCGGCAC
GCTCCGACCATCAACCTGGTCCGTCTCGATCGGGCGGCAACACACCGGCACAGAGCCATGCTTCGGGCAGCACGCAAGAC
GCGTCTCCAAGACCTCAGTTGACCCGCAGTGCCGCAGGCAATGCTGGAACCTTCCGTATGGAGAACGGCAACCTGGAGCG
CAACACACCCTCCATCAACATCATTTCCCTGGACGCCAAAGGTCGACCGGATTTCGATCACTTCATTCCATCCGCACTGG
GTAACCTGCTCAAGGACCGGCTGGGCCAACCGGGCAAGAGCTATCTGGCCACAAACTCGGCGAGTGACCGCGATCAAGTG
CTGCTCGAGCCCAAAGGTCATCTGGTACAGATAGCCCAGACCGACGCTGCTCTGGCCTTGCTTCGCAGCAGCAAACCGCT
GAGTGTTCCGCCTGGCAGCAAACCCGACAGCCTGAAACTGCAACGCGAAGACAACTCGGCAAGCATCGCCGGCCACGACA
GTGGCGCCCAGTCATTGCCGGACAGCGCCCACATCGCTCATTTGAGCGGTGCCCATCTGGACAGCAACGGAAAGCATCTG
CGGCTGCAGGACGAGAAGCTCTACGAACTGCATCCGGCAACCGCGACCTGGTCTCCCAGCGAAGACAGCAAGGAGACCAC
GTTCAGCCACCTTGCGACCCAGGGCGATGGCAAGGTTTACGGCCGGACGGGCGATACGCTGGTCAACCTCTCCAGTAGCG
AAAAAAACAAGCCGGACATGAAGCTTGAAGGCCTGACGGCGCATTCGGTCTCTCCGGATGGCACCGTGGCGATGCTCGCC
GGTAAAGACACCCAGACCTTGCAGTTGGGCGAAATGGGCAAGGTGCCAGACATGCACCTGACGCTCGAACTCAACGATGG
CAAATCCGAAGCCAAACATGTCGGCCTGACCCGTGACCGCCTGTTCGTGGCCGACGCCGAAGGCCAGCTCTACAGCGCCG
CGCGAAAGGACCTGAAAAGCGAAGACGGCATACTGCACCTGCAACCCGAGAAAAATTTTCAGCCTGAAGACTCGACTCTG
GGCAAGCGCCAGCAGGTCACAGGCTTCCTGAGCGGTGAAAACGGTCAGTTGCACGCGCTGATCAAAAACGATGTCGGCGA
CATCCACAGCCACACCCTCGACGAGGCGAATTCCAGCCTGCGCAACGGCTGGAACCTGACCGATGTGGTGGTCGTCGAGA
ACAGGCGCGGCCTGCCGGAGGGTAAGGTGCCGACCCCGGAAAACACGTTCGATCTGGACCGCAACGGTCGGGTGGGCATC
GTAGACAACCGTGTACAGAAATGGGATGCAACCACGGAAGGCTGGAAGGACACCGGCGTCAAGGACATCGACCGGTTGCA
GCGCGGCAACAACAGCAGCGCTTACGTGCTCAAGGACGGCAAGATCTCCGAACTGAAGGTCAGCCCCGAATACACCAAGA
CCTCGTTGAGCGGCACCCACAACCTCAACCAGCCGACCCGCTCGACCAAAGTTGAAATGGGCGATGCCATCGAAGGCCTC
GATGACCGCGTCATCAAGGCGTTTGCCATGCTCAACGACAAGCAGTTTGCCGCCGTCGATGATCAGGGCCGCCTGACGGC
CCATCACAAGACCGGCGAGCCTACCGAGCTGACCCGCAAGGACCTGTCCGGCGAAGTCGCCTCGCTGACCCTGGACGAGA
ACCACAACCTGCACGCCACGACCACCACGGGCGAGTTGTACTTCATGTCCAAGGACGACTGGCAGGCACCGGAATCGGAC
CCCAAGCCTGACGCGAAATGGCAGAAAATCGACACGCCCGGCAATCGTCCGGTCGACAGTATCCGCAAGGAGGGCAACAA
CACCGTCAGTGTGAAACTCAAGGATGGGGCGCCTGACGAGGGCTCCTTCGTCCTCAAGGACAAGCAGTTCCAGCCGATGG
AGCCGCGCAAGGAGCCGGAAAACGGGTTGAACAATCTGTTCGGGCGACTGGATGATGGCTCGAAAAACGTCAAGATTTTC
GGCACCGGCAACACGTTGAAAATCAGCAGCACCCTGGCGGGTCGCAGTGACACCTCGCTCAGTCACAAGTCGAGCGTAAA
GGAGTTCATTCCGGCTCACATCGTGAAACCCGACCTGAATATTCCTCGGCCGATCATGAACGGGTTCTACCACATCCAGC
ATCGGATCAAAGGCCGCGAAGGGCTGCAGGAGGTGTATCAGGCAGAGGCACCTGTATTCAGGGAACTGACTGAGATCAAG
AACTCCTCCAGCCCCGCACCTCAGCCTGGTAACACCTTGAAGGAGCGTATATCCCGCCTGGATCTGGGCCCGGAAGGCAA
ACAGCTGGTCGAGGATCTGGAAACGCTGCGCGATGACCTGGAGAACCACAGCCACGGTGTGGTGCAGCAATTGGGACAGA
AGACGGGCGTGCTCAACCTGCACGGCGAATTCATCAAACCCGAGCGCAAACCGACGCAAGCCCAGATCGCAAAAGCGGAA
CACGCCAAGCCGATCAAGAATGATCTGGCTGCCGATGTACAGGGCGCGTTGAGCAAGGTTGCCCCCTCCTCCGAAAACCC
GGCCGGTGCTCTGCTCAAACGACTCAATGACAACGGCATGAAGCTCAAGCACCTGGACGGTGATACGTCTCCCGATCACC
GGCGCAGTCAGAGTGACAAGCTCGCCTTGAGCAAGGCGCGTCTGGCGCTGGACGTCGTGACACTGGACAAGGTAGGCAAG
CTGCTCGACAAGGCCGAGACGCGCAGCCCTGAAGTGGATAACGCCACCCATGTGAAAACGCTCAAGACCGAGCTGAACGC
ACTCAACAAGCAGTACAACGACAACCCCGTCAAGGTCGTGACCGAAATGGGCTTCAGCGGACATAAGCAACTGGAAGACG
GCTACGACAGCATCAAGTCGTTTCTCAACGGCTTCAAGGACCCGACTCACGCCACCAGTGTGAACATGCGCGCGGCGATG
GGTGCGACCAGCCAGGCGGATCTGGCCGACAAGATGAAAAGCGCGCTCAAACACCTTGAGCACCCTGACGATGAAATCGC
CATGTCACGCAGCTATGGTGTCACTGCGACCACCCCGTTCTTCAGCCTTGCCAACCTGGGTGCAGGACCCTGGCCCAGCG
CGTCGGTCGGCGTGGCACGCAACTACGCGTTCAATGCCGAGCGCGGTGACAAGGGTGTGACGGTCTACATGTTCCACGAA
GGCGGTGTCAGCGGCAGCGCGGGCGTGGGCGGCGGTCAGAGACTGGTGCCCAACTTCGGTGAGTACAACATCAATGATCA
ACGGGGTTTTATGGCCCTTCGACTCGGCGGCGACGGCACCTTACAGGGAACCGGTATGTCGCGCAGTGGCACAGCCTTCA
CCGTGCCTGACGAAAAAATCGACCAGTTTGTCGACGATCTGTTTGGCGGCAAGGTTACCGCGCTGGACGTGCTCAAGAAC
GGCACTGCCCACGAAGCGCACTCGATGAAGCGCTTCAATGGCGATGTGACCGGGGGCGTAGGTGTCGAGCTTCGCGTCGA
GCTGGGACTGAGCGATCCCAATGAAAAAGAATGGACCGCAGGCGCCCGGGCAGGCATCGGCGCCAACATAAACCTGAACC
TGGCCACATTTACCAAGTACTCGGCGACCCAGGAAAACGACAAGGGGCTGCTGGACGAAAAATCCAACAATCGGGTCCGT
TTTGCCAACACCGCCGGCGCCACCGCCTATGCACGCGCCCAGATCAACCTAGGCCACACCGACCAGACCGCTGCCGCTCA
GCCGGCAACGACGACACAGCCTTCAGCAGCAGCCCCGACGCCTGCTGCAGTGGCACAACCGGGCGCACAGGCCTCTGCAT
TCGGCCCTAATGCGACGATCACTGCGTCAATCGATTCAAAGACCACCAAACGCACCAAGTTCCAGACCAAGGAAGGGGTG
GCCATGACGACCGCTGAGCTGACGAAGCTGAGCAAGCAGCTGGACGGTGCCTTCAAGGACAAGCCTGCACAGAAAGAGCT
GACGCGACTGGCCGATGCCAAACAATCCGAATACGCGAACAAGACGCCGAAAGAGAAAATCCAGGCGCACCTGGATGGCC
TCAACAAGCTCTTCGAGGACCGTTCTCCGAATAACAGTGCGCAAAAAGCTGCGCTACTGAGCCTGAGCCGCGCAACAACC
AAACACGATGCAGCCGTCGATAAACATTCGGTGCTCGACAACGCCCGTCATGAAAGCAACTACACCAACCTCTCGCGTCT
GGATGAGCAAAGTGTCGCCTCGAAAATCATGAGCATGCTCGGCAGTCTGCACTCGCCGAGCAACGCCGAGAACATTGCCA
AACTGATCGCCGAGGAGCCCAACCTGAAGTCGCTGATCGGCCAGATGAAAGCCAGCCCGGGCACGATGGCACGGGTTCGC
CTGGAGCCTAAGGACGAGATGATGCAAAAAATCGACAAGGGTACCCGCGAGGGCCGCATCACCCAGAGTGACATCATCGG
CATGCTCAATGACCGCGACAACCTACGGATCAAGGCCATCACGGTGTTCAAGCTGGCGGGCCAGTCCGACGGTTTCACGA
CCCCGACGCCTCTGCTGAGCGCCAGCAGCTCGGCGGCAGTCAACGTCAACAAGACGCTGGCCAAGATCAACTTCAACTAC
GGGGAAGATCAGAACAGGCCGAGCAGCTTCAGCGTCGACGGTGAGATGTCTCGCCCGACCAAAGAGGTTATCGCCACGGC
GCAAGCCTTGAAAAAGGACGGGATGGAATTCAGGGCCTGA
|
| Protein sequence : | |
MLPINNAPVTGQVQGTTSQGHNPRGLEQRPEPPTQRASVSVVQLGKQPVQVPVTQQPDIPPRTFGPTPGALTPTAAPEQT
APQLDADDIAHISSARRPPVTRSSSTSSERPTTALQRELSFKDWLPSQESSPARSDHQPGPSRSGGNTPAQSHASGSTQD
ASPRPQLTRSAAGNAGTFRMENGNLERNTPSINIISLDAKGRPDFDHFIPSALGNLLKDRLGQPGKSYLATNSASDRDQV
LLEPKGHLVQIAQTDAALALLRSSKPLSVPPGSKPDSLKLQREDNSASIAGHDSGAQSLPDSAHIAHLSGAHLDSNGKHL
RLQDEKLYELHPATATWSPSEDSKETTFSHLATQGDGKVYGRTGDTLVNLSSSEKNKPDMKLEGLTAHSVSPDGTVAMLA
GKDTQTLQLGEMGKVPDMHLTLELNDGKSEAKHVGLTRDRLFVADAEGQLYSAARKDLKSEDGILHLQPEKNFQPEDSTL
GKRQQVTGFLSGENGQLHALIKNDVGDIHSHTLDEANSSLRNGWNLTDVVVVENRRGLPEGKVPTPENTFDLDRNGRVGI
VDNRVQKWDATTEGWKDTGVKDIDRLQRGNNSSAYVLKDGKISELKVSPEYTKTSLSGTHNLNQPTRSTKVEMGDAIEGL
DDRVIKAFAMLNDKQFAAVDDQGRLTAHHKTGEPTELTRKDLSGEVASLTLDENHNLHATTTTGELYFMSKDDWQAPESD
PKPDAKWQKIDTPGNRPVDSIRKEGNNTVSVKLKDGAPDEGSFVLKDKQFQPMEPRKEPENGLNNLFGRLDDGSKNVKIF
GTGNTLKISSTLAGRSDTSLSHKSSVKEFIPAHIVKPDLNIPRPIMNGFYHIQHRIKGREGLQEVYQAEAPVFRELTEIK
NSSSPAPQPGNTLKERISRLDLGPEGKQLVEDLETLRDDLENHSHGVVQQLGQKTGVLNLHGEFIKPERKPTQAQIAKAE
HAKPIKNDLAADVQGALSKVAPSSENPAGALLKRLNDNGMKLKHLDGDTSPDHRRSQSDKLALSKARLALDVVTLDKVGK
LLDKAETRSPEVDNATHVKTLKTELNALNKQYNDNPVKVVTEMGFSGHKQLEDGYDSIKSFLNGFKDPTHATSVNMRAAM
GATSQADLADKMKSALKHLEHPDDEIAMSRSYGVTATTPFFSLANLGAGPWPSASVGVARNYAFNAERGDKGVTVYMFHE
GGVSGSAGVGGGQRLVPNFGEYNINDQRGFMALRLGGDGTLQGTGMSRSGTAFTVPDEKIDQFVDDLFGGKVTALDVLKN
GTAHEAHSMKRFNGDVTGGVGVELRVELGLSDPNEKEWTAGARAGIGANINLNLATFTKYSATQENDKGLLDEKSNNRVR
FANTAGATAYARAQINLGHTDQTAAAQPATTTQPSAAAPTPAAVAQPGAQASAFGPNATITASIDSKTTKRTKFQTKEGV
AMTTAELTKLSKQLDGAFKDKPAQKELTRLADAKQSEYANKTPKEKIQAHLDGLNKLFEDRSPNNSAQKAALLSLSRATT
KHDAAVDKHSVLDNARHESNYTNLSRLDEQSVASKIMSMLGSLHSPSNAENIAKLIAEEPNLKSLIGQMKASPGTMARVR
LEPKDEMMQKIDKGTREGRITQSDIIGMLNDRDNLRIKAITVFKLAGQSDGFTTPTPLLSASSSAAVNVNKTLAKINFNY
GEDQNRPSSFSVDGEMSRPTKEVIATAQALKKDGMEFRA
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