Name : hrcC
Accession : AAT96315.1
PAI name :
PAI accession : AY597282
Strain :
Virulence or Resistance: Virulence
Product : HrcC
Function : -
Note : PAI-R2-ORF28
Homologs in the searched genomes : 23 hits ( 23 protein-level )
Publication :
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.
| DNA sequence : | |
ATGAAAGCCTGGCCGCCGCGCTGCGTCTGTCGGGCCCCAGCATTCGACGCTTCAGTGCTGCGCTGGCACTGGATCCGCAA
AGCCATCGGCTTTGCCTGGTGCAGTTTCAGTCCTTCCAGGGTACCTCGCCGGTCATCAGCATCATTGAGGCGCTGGTCAA
CCAGCGCGACGTGTGGGAATCGATGCTCGAAGCGTCAGCATCGCCTGCAAAACGCCCGGTTCGTCCTCTGTCTCTGGGGA
ATTCGTATGTTTAAGCAGTGCCTGAAACGGCTTTTCTGGATCTCAGTGTTGTGTGTGCAGGCTGAAGTCGTAACTGCGGG
TGTGCCTGAAGAGTGGCGCCAGTCCGCCTATGCGTATGAGGCGTCGCAAACCCCGTTGACCAAAGTGTTGTCGGATTTCG
CCAGCTCGTATGGCGTGGGTCTCGACAGCCGCGGTATCACAGGAGTGGTGGATGCGAAGATTCGCGCGGGCAATGCCCAG
GAGTTTCTCGACCGGCTGGCGCTGGAACATCAATTCCAGTGGTTTCTGTACAACGGCAAGCTGTACGTCAGCCCGCAATC
GGGCCAGGTGTCCCAGCGCCTTGAAGTGTCGGCTGACGCAGCGCCGGATCTGAAGCAGGCCCTCACCGATATCGGTCTCT
TGGACAAGCGTTTCGGCTGGGGCGAGTTGCCGGATGAAGGCGTGGTACTGGTCAGCGGACCGGCGCGCTATGTCGAGTTG
ATACGCGGTTTCAGCAAGGAAAAGGTCAAGGCGCAGGACAAGCATCAGGTCATGATGTTTTCGTTGCGATATGCCGCCGT
AGCTGACCGCGAGATTCAGTATCGCGAGCAGAGCATCACCATTCCAGGTGTCGCGACCCTGCTGGACGGCTTGCTGGAAA
GCCAGCACAGGCCTCCGTTGCCGCAGGACCCGGCCGCCAATATCCGCGCCATGCAGGACATGGCCGACATGGGCCAGAGC
AAGATCATGAACCTGGCCAGCAACCGCAAGGCCACACCGGCACGTAGCGGCGAGAGCAAATCGAACAGCAACCGCCGTGT
GGTGGCAGACGTGCGCAACAACGCGGTACTGATCTACGATGATCCAGAAAAGCGCGAGACCTACCAGCAGTTGGTGCAGC
AGCTCGATCAGCCCAGCAACCTGGTGGAAATCGACGCGGTCATCCTCGACATCGATCGCAGCCAGCTGAGCAGCCTGGAA
TCCCGGTGGTCTGCGCGGGCAGGCTCGGTGAACTTCGGCAGTTCGTTGCTGACCGGTGGTTCGTCGACCCTGTTCATCAA
CGATTTCGACCGGTTCTTTGCCGACATACAGGCGCTCGAAGGGCAGGGTGTTGCTTCGGTCATTGCCCGGCCTTCGGTGC
TGACGCTGGAAAACCAGCCGGCGGTGATCGATTTCAGCCGCACGGCTTACATCACCACCACCGGCGAGCGGGTTGCGAAC
GTTCAGCCGGTGACGGCGGGCACCAGCCTGCGGGTCATTCCCAGAACCATTGCCGGTGAGCAGCCCAACCGGTTTCAGTT
GATCGTCGATATCGAAGACGGCCAGCTCGAGCGTACCCGTGATAACGATACGCCGGATGTGAAGCGCGGCACGGTCAGCA
CCCAGGCGGTCATCGGAGAAAACCGTTCGCTGGTCATCGGCGGTTTTCATGTCGATGAAAGCGGAGAGCGTCAGGACAAG
GTACCGATTCTTGGAAGCCTGCCGGTGATCGGTGCGCTGTTCACTTCAAAGCGCCATGAAGTCTCGCGACGTGAACGTTT
ATTCATCCTCACACCGCGACTGGTGGGCGATCAGCTCGATCCGTCGCGCTATATCGCCAGGGAAAACCGCCCGCAGCTCG
ACAGAGCCCTTGCGCTGAGCGGCTCGCCCAGTACCCGGCAACAGAAAAGGGATCGGGTGAGCAAGACGTTTTCGGAGCTG
GCCAACGGACGGCTGCCGCCTGATATCAAAGAGTCATCATCTGGCGTGGCGCTGAAGGACCTGTGTAGAGTGGATCACGG
CCTGTCGATCGATGCGTCCCGGGGACAGTGGTTCAGTGGCGATACCTTCGATATCACCGTCGGTGTGGTTCGCAACGACA
GTGCCCGCGCCAAGGCATTCTCGCTGGCTTCCTGCGCCGGAGCCCGGACACTTGCAGTAACAATGTTACCCGTAACGGAG
TTGCAGCCAGGCCAGTCCACCGAAGTGTTCGTGGCCACGAGGCCCGCCGCTGCCACTGCGGTTCCAGCAGCCCCCGTGAG
AGTTTCAATATTGCCGCCTTGA
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| Protein sequence : | |
MKAWPPRCVCRAPAFDASVLRWHWIRKAIGFAWCSFSPSRVPRRSSASLRRWSTSATCGNRCSKRQHRLQNARFVLCLWG
IRMFKQCLKRLFWISVLCVQAEVVTAGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGVVDAKIRAGNAQ
EFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELPDEGVVLVSGPARYVEL
IRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGVATLLDGLLESQHRPPLPQDPAANIRAMQDMADMGQS
KIMNLASNRKATPARSGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSLE
SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERVAN
VQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDK
VPILGSLPVIGALFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSEL
ANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTMLPVTE
LQPGQSTEVFVATRPAAATAVPAAPVRVSILPP
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