Name : avrE
Accession : AAT96347.1
PAI name :
PAI accession : AY597283
Strain :
Virulence or Resistance: Not determined
Product : AvrE
Function : -
Note : PAI-R2-ORF20
Homologs in the searched genomes : 3 hits ( 3 protein-level )
Publication :
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.
| DNA sequence : | |
ATGCTTCCAATCAACAACGCGCCCGTGACCGGACAGGTTCATGGCGCAACCTCCCAGGGTCACAATCCACACGGGCTGGA
GCAGCGCCCCGAGCCGCCCACCCAGCGCGCTTCGGTGTCGGTCGTTCAGTTGGGCAAGCAACCGGTACAAGTCCCGGTGA
CGCAACACCTCGATACCCCCCCGCGCACCTTAGGCTCGACACCAGGCGCTTCGACGTCGGCTGCTGCGCCGGAGCAGGTC
GCACCGACACTGGATGCCGACGATATCGCTCATGTCAGCTCGGCTCGACGCCAGCCCGGTACCCGTTCGTCCTCCACGGC
CAGCGAGCGTCCGACAACGGCGCTGCAACGGGAACTGTCGTTCAAGGACTGGCTGCCCGGGCAGGAAAATACGCCAGCGC
GGGCCGACCATCAATCCAGTCCGCCTCGATCGGGCGGCAACACGCCCGCACCGATACAAGGCCGTGCTTCGACTGGCACG
CAAGACGCGTCTCCAAAGCCTCAGTTGACGCGCAGTGCCGCCGGCAACGCCGGGACCTTCCGGATGGAGAACGGCAACTT
CGAGCGCAACACACCCGCTGTCAACCTCATATCTCTGGACGCCAAAGGCCGACCAGACTTCGATCATTTCATTCCCTCCG
CGCTGGGTAACCTGCTCAAGGACCGGCTTGCCCAGCCGGGAAGGAGCTATCTGGCCAAAAATTCGGAAAGTAACCGTGAT
CAAGTGCTGCTCGAGCCCAAAGGGCATCTGGTGCAGATAGCCCAGACCGACACCGCTCTGGCGCTGCTTCGCAGCAGCAA
ACCACTGAGTGTTCCCCCTGGCAGCAAACCCAACAGCCTGGTACTGCAACGTGAAGACCATTCGGTAAACATTGCCGGCC
GCGACAGCGGCGTTCAGTCATTGCCGGACAAGGCCCATATCGCTCATCTGAGCGGTGCCCATCTGGACAGCAGCGGAAAG
CATCTGCGGCTGCAGGACGAGAAGCTCTACGAACTGCACCCGGCAACCGCGACCTGGTCCCCCAGCGAAGACAGCAAGGA
GACCACGTTCAGCCACCTTGCAACCCAGGGCGATGGCAAGGTTTATGGCCGGACGGGCGATACGCTGGTCAACCTGTCCA
GCACCGAAAAAAACAAGCCGGAGATGAAGCTTGAAGGGCTGACGGCGCACTCGGTCTCTCCGGACGGCACCGTGGCCATG
CTCGCGGGCAAGGACACCCAGACCCTGCAGCTGGGCGAAATGGGCAAGGTGCCCGACATGCACCTGACGCTCGAACTCAA
CGATGGCAAATCCGAAGCCAAACATGTTGGCCTGACCCGTGACCGCCTGTTCGTCGCCGACGCCGAAGGCCAACTCTACA
GCGCTGCGCGAAAGGACCTGAAAAGCGAAGACGGCATCCTGCACCTGCAACCCGAGAAACACTATCAGCCTGAAGACTCG
GCACTGGGCAAGCGCCAGCAGGTCACCGGCTTTTTGAGCGGTGAAAACGGTCAGTTGCACGCGCTGATCAAGAACGATAT
CGGCGACACCCACAGCCACACCCTCGACGAAGCGAATTCCAGCCTGCGCAGCGGCTGGAACATGACGGATGTGGTGGTCG
TCGAGAACAGGCGCGGCCTGCCCGAAGGCAAGGTGCCAACGCCGGAAAACACCTTCGACCTGGACCGCAACGGCCGGGTG
GGCGTGGTGGACAACCGTGTGCAGAAATGGGATGCAACCACGGAAGGCTGGAAGGACACCGGCGTCAAAGACATCGACCA
GTTGCAGCGCGGCGCCAACAGCAGCGCTTACGTTCTCAAGGACGGCAAGATCTCCGAACTCAAGGTCAGCCCCGAATACA
CTAAGACTTCGTTGAGCGGCACTCACAACCTCAACCAGCCGACCCGCTCGACCAAGGTTGAAATGGGCGATGCCATCGAA
GGCCTCGATGACCGCGTCATCAAAGCCTTTGCCATGCTCAACGACAAACAGTTTGCCGCCGTCGATGATCAAGGCCGCCT
GACGGCCCATCACAAGACTGGCGAGCCGACCGAGCTGAGCCGCAAGGACCTGTCCGGCGAAGTCGCCTCGCTGACCCTGG
ACGAGAATCACAACCTGCACGCCACAACCACCGCGGGCGAGTTGTACTTCATGGCCAAGGACGACTGGCAGGCACCGGAA
TCGGCCCCCAAGCCTGACGCCAAATGGCAGAAAATCGATACGCCCGGCAATCGCCCGGTGGACAGTATCCGCAAGGAGGA
CAACAACACCGTCAGTGTGAAACTGAAGGATGGGGCGCCTGACGAGGGCTCCTTCGCCCTCAAGGACAAGAAGTTCCAGC
CGATGGAGCCGCGCAAGGAGCCGGAGAACGGTTTGAACAACCTGTTCGGGCGACTGGATGATGGCTCGAAAAACGTCAAG
ATTTTCGGAACCGGCAACACGTTGAAAATCAGCAGCACCCTGGCGGGTCGCAGTGACACCTCGCTCAGTCACAAGTCGAG
CGTACGAGAGTTCATTCCGGCTCACATTGTGAAGGCCGACCTGAGTATTCCTCGACCGATCATGAACGGCTTCTACCACA
TCCAACATCGGATCAAGGGCCGCGAAGGACTCCAGGAGGTGTATCAGGCAGAGGCACCTGTGTTCAAGGAACTGACCGAG
ATCAAGAATTCGTCGAGCCCCGCGCCTCAGCCTGGTCAGACCTTGAAGGAGCGTATCTCCCGCCTGGATCTGGGCCCGGA
AGGCAAACAGCTGGTCGAGGATATGGAAAAGCTGCGTGATGATCTGGAAAACCACAGCCACGGAGTGGTCCAGCAACTGG
GTCAGAAGACAGGCGTGCTCAACCTGCACGGCGAATTCATCAAACCCGAGCGCAAGCCGACAGAAGCCCAGATCGCAAAA
GCGGCACACGCCAAGCCGGTCAAGAATGACCTGGCCGCCGATGTACAGGGCGCATTGAGCAAGGTTGCACCCTCCTCCGA
AAACCCGGCCGGCGTCCTGCTCAAACGCCTCAATGACAACGGCATGAAGCTCAAGCACCTGGACGGCGATACGTCTCCCG
ATCACCGGCGCAGTCAGAGTGACAAGCTCGCCTTGAGCAAGGCACGTCTGGCGCTGGATGTGGTGACGCTGGACAAGGTA
GGCAAGCTGATCGGCAAGGCCGAGACGCGCAATCCTGAAGTGGATAACGCCACCCATGTGAAAGCGCTCAAGACCGAGCT
GAACGCAATCAACAAGCAGTACAACGACAACCCCGTCAAGGTCGTGACCGAAATGGGGTTCAGCGGGCACAAGCAACTGG
AAGACGGCTACGACAGCATCAAGTCGTTTCTCAACGGCTTCAAGGACCCGACTCACGCCACCAGTGTGAACATGCGCGCG
GCGATGGGTGCGACGAGCCAGGCGGATCTGGCCGACAAAATGAAAAGCGCGCTCAAACACCTTGAGCACCCTGACGATGA
AATTGCCATGTCACGCAGCTATGGCGTCACTGCGACGACCCCGTTCATCAGCCTGGCCAATATGGGTGCAGGCCCCTGGC
CCAGCGCTTCGCTCGGCGTGGCACGCAACTACGCGTTCAATGCCGAGCGCGGTGACAAGGGCGTGACGGTCTACATGTTC
CACGAAGGCGGTGTCAGCGGCAGCGCGGGCCTGGGCGGCGGTCAGAGACTGGTGCCCAACTTCGGCGAGTACAACATCAA
TGATCAACGGGGCTTTGTGGCCCTTCGCCTTGGCGGCGACGGCACGTTACAGGGGACCGGCATGTCGCGCAGCGGCACAG
CCTTCACCGTGCCTGACGAAAAAATCGACCAGTTTGTCGACGATCTGTTTGGCGGCAAGGTCAATGCGCTGGACGTACTC
AAGAACGGCACGGCTCACGAAGCGCACTCGATGAAGCGCTTCAATGCAGATGCAACCGGTGGCGTGGGTGTTGAGCTTCG
CGTCGAGCTGGGGCTGAGCGATCCCAATGAAAAAGAGTGGACTGCGGGCGCCCGGGCAGGCATCGGTGCCAACATCAACC
TCAACCTGGCCACGTTTACCAAATACTCGGCGACCCAGGAAAATGACAAGGGCCTGCTGGACGAAAAATCCAATAACCGG
GTACGCCTTGCCAACTCGGCCGGTGTCACCGCCTACGCACGTGCGCAGATCAACCTTGGCCACACCGATCAGACTGCTGC
AGCGCAGCCGGCAACGACCACCCAGCCTTCAGCTGCAGCCCCGACGCCTGCTGCAGTGGCACAGCCGGGCGCGCAGGCCT
CTGCATTCGGCCCCAACGCGACGGTCACTGCATCAATCGATTCCAGAACCACCAAACGCACCAAGTTCCAGACCAAGGAA
GGGGTGGCCATGACCACTGCGGAACTGACGAAGCTGAGCAAACAGCTGGACGGCGCGTTCAAGGACAAGCCAACGCAAAA
AGAGCTGACGCGACTGGCGGACGCGAAACAACCCGAGTACGCGGACAAGACGCCGAAAGAGAAAATCCAGGCGCACCTGG
ATGGGCTCAACACGCTTTTCAAGGACCGCCCTTCGAATAACAGCGCGCAAAAAGCTGCGCTGCTGGCCCTGAGCCGTGCA
ACGACCAAACACGATTCGGCCATCGATAAACATTCGGTGCTCGATAACGCCCGTCATGAAAGCAACTACACCAACCTTTC
GCGTCTGGATGAGCAAAGTGTCGCCTCGAAAATCATGAGCATGCTGGGCAGTCTGCACTCGCCGAGCAACGCCGAGAACA
TTGCCCAACTGATCGCCGAGGAGCCCAACCTGAAATCATTGATCGGCCAGATGAAAGCCAGCCCCGGCACCATGGCACGG
GTTCGTCTGGAGCCCAAAGACGAGATGATGCAGAAAGTCGACCAAGGCACCCGCGACGGCAGCATCACCCAAAAGGAAAT
CATCGGCATGCTCAATGACCGTGACAACCTGCGGATCAAGGCCATCACGGTGTTCAAGCTGGCGGGTCAGTCCGACGGTT
TCACGACCCCGACGCCTCTGCTGAGCGCCAGCAGCTCGGCGGCAGTCAACGTCAACAAGACGCTGGCCAAGATCAACTTC
AACTACGGGGAAGATCAGAACAGGCCGAGCAGCTTCAGCGTGGACGGTGAGATGTCTCGCCCGACCAAAGAGGTTATCGC
CACGGCGCAAGCCTTGAAAAAGGACGGGATGGAATTCAGGGCCTGA
|
| Protein sequence : | |
MLPINNAPVTGQVHGATSQGHNPHGLEQRPEPPTQRASVSVVQLGKQPVQVPVTQHLDTPPRTLGSTPGASTSAAAPEQV
APTLDADDIAHVSSARRQPGTRSSSTASERPTTALQRELSFKDWLPGQENTPARADHQSSPPRSGGNTPAPIQGRASTGT
QDASPKPQLTRSAAGNAGTFRMENGNFERNTPAVNLISLDAKGRPDFDHFIPSALGNLLKDRLAQPGRSYLAKNSESNRD
QVLLEPKGHLVQIAQTDTALALLRSSKPLSVPPGSKPNSLVLQREDHSVNIAGRDSGVQSLPDKAHIAHLSGAHLDSSGK
HLRLQDEKLYELHPATATWSPSEDSKETTFSHLATQGDGKVYGRTGDTLVNLSSTEKNKPEMKLEGLTAHSVSPDGTVAM
LAGKDTQTLQLGEMGKVPDMHLTLELNDGKSEAKHVGLTRDRLFVADAEGQLYSAARKDLKSEDGILHLQPEKHYQPEDS
ALGKRQQVTGFLSGENGQLHALIKNDIGDTHSHTLDEANSSLRSGWNMTDVVVVENRRGLPEGKVPTPENTFDLDRNGRV
GVVDNRVQKWDATTEGWKDTGVKDIDQLQRGANSSAYVLKDGKISELKVSPEYTKTSLSGTHNLNQPTRSTKVEMGDAIE
GLDDRVIKAFAMLNDKQFAAVDDQGRLTAHHKTGEPTELSRKDLSGEVASLTLDENHNLHATTTAGELYFMAKDDWQAPE
SAPKPDAKWQKIDTPGNRPVDSIRKEDNNTVSVKLKDGAPDEGSFALKDKKFQPMEPRKEPENGLNNLFGRLDDGSKNVK
IFGTGNTLKISSTLAGRSDTSLSHKSSVREFIPAHIVKADLSIPRPIMNGFYHIQHRIKGREGLQEVYQAEAPVFKELTE
IKNSSSPAPQPGQTLKERISRLDLGPEGKQLVEDMEKLRDDLENHSHGVVQQLGQKTGVLNLHGEFIKPERKPTEAQIAK
AAHAKPVKNDLAADVQGALSKVAPSSENPAGVLLKRLNDNGMKLKHLDGDTSPDHRRSQSDKLALSKARLALDVVTLDKV
GKLIGKAETRNPEVDNATHVKALKTELNAINKQYNDNPVKVVTEMGFSGHKQLEDGYDSIKSFLNGFKDPTHATSVNMRA
AMGATSQADLADKMKSALKHLEHPDDEIAMSRSYGVTATTPFISLANMGAGPWPSASLGVARNYAFNAERGDKGVTVYMF
HEGGVSGSAGLGGGQRLVPNFGEYNINDQRGFVALRLGGDGTLQGTGMSRSGTAFTVPDEKIDQFVDDLFGGKVNALDVL
KNGTAHEAHSMKRFNADATGGVGVELRVELGLSDPNEKEWTAGARAGIGANINLNLATFTKYSATQENDKGLLDEKSNNR
VRLANSAGVTAYARAQINLGHTDQTAAAQPATTTQPSAAAPTPAAVAQPGAQASAFGPNATVTASIDSRTTKRTKFQTKE
GVAMTTAELTKLSKQLDGAFKDKPTQKELTRLADAKQPEYADKTPKEKIQAHLDGLNTLFKDRPSNNSAQKAALLALSRA
TTKHDSAIDKHSVLDNARHESNYTNLSRLDEQSVASKIMSMLGSLHSPSNAENIAQLIAEEPNLKSLIGQMKASPGTMAR
VRLEPKDEMMQKVDQGTRDGSITQKEIIGMLNDRDNLRIKAITVFKLAGQSDGFTTPTPLLSASSSAAVNVNKTLAKINF
NYGEDQNRPSSFSVDGEMSRPTKEVIATAQALKKDGMEFRA
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