Name : hrcC
Accession : ABA47303.1
PAI name :
PAI accession : DQ168848
Strain :
Virulence or Resistance: Virulence
Product : HrcC
Function : -
Note : Pcich-83-1-PAI-R2-ORF42
Homologs in the searched genomes : 22 hits ( 22 protein-level )
Publication :
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.
-Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (16-AUG-2005) Ecology & Evolution, University of Chicago, 1101 E. 57th Street, Chicago, IL 60637, USA.
| DNA sequence : | |
ATGTTTAAGCAATGCTTGAAACGACTGTGCTGTCTTGCACTGCTGTGCATGCAGGCAGAGGTGGCCATGGCTGCGGTACC
TGAAGAGTGGCGCCAGTCCGCTTATGCCTACGAGGCATCCCAGACGCCCTTGAGCACCGTGCTGAAGGATTTTGCCAGCT
CCTATGGCGTAGGCCTGGAGATGAATGGTGTCAGTGGTGTGGTGGATGCAAAGATTCGCGCCGGCAATGCCCAGGAATTC
CTGGATCGCATGGCCCTGGAACATCAATTTCAGTGGTTCCTGTACAACGGCAAGTTGTACGTGAGCCCACAGTCGGGGCA
AGTCTCGCAACGGCTGGAAGTGTCTTCCGATGCCGCCCCCGACCTGAAGCAGGCGCTGACCGATATCGGCCTGCTGGACA
AACGTTTCGGCTGGGGTGAACTGCCGGATGAAGGCGTGGTGCTGGTCAGTGGTCCGGCTCGCTATGTCGAACTGATTCGC
GGTTTCAGCAAGGAGAAGGTCAAGCCTGAAGAAAAGCAGCAGGTCATGATGTTCTCCCTGCGTTACGCCGCCGTGGCCGA
TCGCGATATCCACTATCGTGAGCAGAGCATCACCATTCCCGGTGTCGCGACCCTGCTCGACGGCCTGCTTGAAAGCAAAC
AGGTTGTACCGCCTTCACCCCAGGACCCGATGGCCAATATCCAGGCCTTGCAAGGCATGGCCGATATCGGCCGCAACAAG
ATCATCAATCTGGCCACAGAGCGCACCGCTTCCCGTGACAAGCCAAAGCCTGGCAAGACCTCAAGCAATCGCAAGGTGGT
CGCCGATGTGCGCAACAATGCGGTACTGATCTACGACACGCCGGAAAAGCGCGAGATGTATCAGCAACTGATCCAGCAAC
TGGACCAGCCGAGCAATCTGGTGGAAATCGATGCAATCATTCTGGACATCGATCGTACTCAACTGAGCGCCCTGGAATCC
CGCTGGTCGGCACGTGCCGGCTCGGTAAACTTTGGCAGTTCCCTCCTGACCGGTGGTTCGGCCACGCTTTCCATCAATGA
CTTCGATCGCTTCTTTGCCGATATTCAGGCGCTGGAGGGGCAGGGTGTGGCATCGGTGATCGCCAGGCCTTCGGTATTGA
CCCTGGAAAACCAGCCGGCCGTGATCGATTTCAGCCGCACCGCCTATATCACTGCCACCGGTGAACGGGTCGCCAACGTG
CAATCGGTTACCGCCGGGACCAGCCTGCAAGTCATCCCCCGTACCATTGCCGGTGCGCAGCCCAGCCGTTTCCAGTTGAT
CATCGATATCGAGGATGGCCAGCTCGATCGTTCTCGCGACGGTGAAACTCCGGATGTGAAGCGTGGTACGGTCAGCACCC
AGGCGGTCATCAGTGAAAACCGCTCGCTGGTGATTGGCGGGTTTCATGTCGACGAAACCGGCCAGCATCACGACAAGGTT
CCGCTGCTGGGAGATCTGCCTGTTCTGGGATCGCTGTTCACCTCCAAGCGCCAGGAAGTGTCGCGACGCGAACGTCTGTT
CATTCTCACGCCAAGGCTGATTGGCGATCAGATAGATCCGGCGCGCTACATCGCTACAGAAAATCGCCCGCAACTCGACA
AGGCGCTGGCCCTCAGTGGTTCGCCCAACAGTCGGGACCGCAAGAAAGCAGCCATTTCCAACGCTTTTGCCGATCTGGTC
AAGGGACGTATCCCCAGTGATGTTAAAGAGGCACCGTCTGGTGTGCGTCTGGGGGATCTGTGTAGAGTGGGGAACGGGTT
TTCGATTGATCCTGCGCGAGGCCAATGGTTTGGTGGTGATGGCTTCGATATTGCTGTCGGAGTCGTACGTAACAACAGCA
GCAAGGCTCAGGATTTCTCTCTGGCGTCCTGTTCGGGTGGACGGACACTTGCTGTAACAATGTTACCGGCCGGGCGTCTT
CAGCCAGGTCAATCAACTGAAGTGTTTGTGGCAACACGACCAGTGGCGACCATTGCGACACCGAACAGCCCGGCCCGAGT
ATCAATACTGCCGCCTTGA
|
| Protein sequence : | |
MFKQCLKRLCCLALLCMQAEVAMAAVPEEWRQSAYAYEASQTPLSTVLKDFASSYGVGLEMNGVSGVVDAKIRAGNAQEF
LDRMALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSSDAAPDLKQALTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIR
GFSKEKVKPEEKQQVMMFSLRYAAVADRDIHYREQSITIPGVATLLDGLLESKQVVPPSPQDPMANIQALQGMADIGRNK
IINLATERTASRDKPKPGKTSSNRKVVADVRNNAVLIYDTPEKREMYQQLIQQLDQPSNLVEIDAIILDIDRTQLSALES
RWSARAGSVNFGSSLLTGGSATLSINDFDRFFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITATGERVANV
QSVTAGTSLQVIPRTIAGAQPSRFQLIIDIEDGQLDRSRDGETPDVKRGTVSTQAVISENRSLVIGGFHVDETGQHHDKV
PLLGDLPVLGSLFTSKRQEVSRRERLFILTPRLIGDQIDPARYIATENRPQLDKALALSGSPNSRDRKKAAISNAFADLV
KGRIPSDVKEAPSGVRLGDLCRVGNGFSIDPARGQWFGGDGFDIAVGVVRNNSSKAQDFSLASCSGGRTLAVTMLPAGRL
QPGQSTEVFVATRPVATIATPNSPARVSILPP
|
|
