PAI Gene Information


Name : hrpD
Accession : ABA47307.1
PAI name :
PAI accession : DQ168848
Strain :
Virulence or Resistance: Virulence
Product : HrpD
Function : -
Note : Pcich-83-1-PAI-R2-ORF46
Homologs in the searched genomes :   No hits  
Publication :
    -Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.

    -Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (16-AUG-2005) Ecology & Evolution, University of Chicago, 1101 E. 57th Street, Chicago, IL 60637, USA.


DNA sequence :
ATGGCGACAGCGCTTCATGCCGCGACCAGGTCCTGCTGTAGCGACGGAACCGCCGAAATGAACGTGAGCGAGCCGCAGGC
GCTGGCCTGGGTATGCTGGTGGACCCAGGGCTGGCGTCAGGCCCATGACAGTTGGCAACTGCACGATTCGGCTGGCATGA
ACGCTTCAACCCTGAAGCTGTTGGGGCAGGTCGACGACACATTGGTCGACCGCTATCTGGGCATGACGTCGACCCTTCCG
CCTGCACCCGATGCCCTGTTGTTGCCCTTGCTGGATCTGAACGATGAGCAATGGGCGCTGGCGCTCGAACTGTGTGCAGG
CATTTGTGCCGGCAGTCGCATGCCGCGCCCCGACAGCCTGGACGAACCGGCCTGGCTCTGGTGTCGGCGGCTGGGCAGGG
CCTTGCAACCCGGGCGCTGGCTGCCCGAACACTGGGATGCCCGGCAGTCTCGAGTTGCGGGCCTTGGCCTTTTGAAAGCG
TGGGTCGGTGACCGGCTCTGGCAGCGACTGCGGGTCAGGTTCGCTCGCGATGCGGTGGGTCAGGCCGAATGCCTGTCACT
GGATGACATCCCCAAAGCCAGATTGTGTGCCTTGTGGCAGGCCGTGGGTGGGTACGTTTTGAGCAACAGCATTGAGGGAA
GTCCGCATGTTGACCAGTCGCAGTCTGACGCTTACCAGTAA

Protein sequence :
MATALHAATRSCCSDGTAEMNVSEPQALAWVCWWTQGWRQAHDSWQLHDSAGMNASTLKLLGQVDDTLVDRYLGMTSTLP
PAPDALLLPLLDLNDEQWALALELCAGICAGSRMPRPDSLDEPAWLWCRRLGRALQPGRWLPEHWDARQSRVAGLGLLKA
WVGDRLWQRLRVRFARDAVGQAECLSLDDIPKARLCALWQAVGGYVLSNSIEGSPHVDQSQSDAYQ