PAI Gene Information


Name : cagA
Accession : BAB87370.1
PAI name : cag PAI
PAI accession : AB057003
Strain : Helicobacter pylori 2017
Virulence or Resistance: Virulence
Product : cytotoxin associated protein CagA
Function : -
Note : 2a type specific for isolates from non-Asian countries
Homologs in the searched genomes :   No hits  
Publication :
    -Yamaoka,Y., Gutierrez,O., Saitou,N., Kodama,T., Kim,J.G., Kashima,K., Ramirez,F.C., Mahachai,V., Osato,M.S. and Graham,D.Y., "Direct Submission", Submitted (09-MAR-2001) Yoshio Yamaoka, Baylor College of Medicine, Department of Medicine; VA Medical Center (111D), 2002 Holcombe Blvd, Houston, Texas 77030, USA (E-mail:yyamaoka@bcm.tmc.edu, Tel:713-790-7234, Fax:713-795-4471).

    -Yamaoka,Y., Orito,E., Mizokami,M., Gutierrez,O., Saitou,N., Kodama,T., Osato,M.S., Kim,J.G., Kashima,K., Ramirez,F.C., Mahachai,V. and Graham,D.Y., "Helicobacter pylori in North and South America before Columbus", FEBS Lett. 517 (1-3), 180-184 (2002) PUBMED 12062433.


DNA sequence :
GAATTGTCTGATAAACTTGAAAATTTCAACAAGAATTTGAAAAGCTTTGATAAATCTCTTGATGAATTCAAAAATGGCAA
AAATAAGGATTTCAGCAAGGCAGAAGAAACGCTAAAAGCCCTTAAAGGTTTGGTGAAAGATTTAGGCATCAGTTCAGAAT
GGATTTCAAAAGTTGAAAACCTTAATGCAGCTTTGAATGAATTCAAGAATGGCAAAAATAAGGATTTCAGCAAGGTAACG
CAAGCAAAAAGCGACCTTGAAAATTCCGTTAAAGATGTGATCATCAATCAAAAGATAACGGATAAAGTTGACAATCTCAA
TCAAGAGGTATTAGTGGCTAAAGCAACGGGCGATTTCAGTATGGTGGAGCAAGCACTAGCCGATCTCAACAATTTCTCAA
AGGAGCAATTGGCTCAACAAGCTCAAAAAAATGAAAGCCTCAATGCTGGAAAAAAATCTGAAATATACCAATCCGTTAAG
AATGGTGTGAACGGAGCCCTAGTCGGTAATGGGTTATCTCAAGCAGAAGCCACAACTCTTTCTAGAAACCTTTCGGACAT
CAAGAAAGAGTTGAATGCAAAACTTGGAAATTTCAATAACAATAATAGACTCAAAAACGAACCCATTTACGCTAAAGTCA
ATAAAAAGAAAGCAGGACAAGCAGCTAGCCCTGAAGAACCCATTTACGCTAAAGTCAATAAAAAGAAAGCAGGACAAGCA
GCTAGCCCTGAAGAACCCATTTACGCTCAAGTTGCTAAAAAGGTAAATGCAAAAATTGACCGACTCAATCAAATAGCAAG
TGGTTTGGGTGTTGTAGGGCAAGCATCGGGCTTCCCTTTGAAAAGGCATGATAAAGTTGATAATCTCAGTAAGGTAGGGC
TTTCAGCTAGATCTGAACCCATTTACGCTACGATTGATGGACTCGGCGGACCTTTCCCTTTGAAAAGGCATGATAAAGTT
GATGAACTCATTAAGGTAGGGCTTTCAAGGACTCAAAAATTGGCTCAGAAAATTGACAATCTCAATCAAGCGGTATCAGA
AGCTAAAGCAGGTTTTTTTGGCAATCTAGAGCAAACGATAGGAAAGCTCAAAGATTCTACAAAACACAATGCTGAGAATC
TATGGATTCAAAGCACAAAAAAAGTGCCTGCTAGTTTGTCAGCGAAACTAGACAATTACGC

Protein sequence :
ELSDKLENFNKNLKSFDKSLDEFKNGKNKDFSKAEETLKALKGLVKDLGISSEWISKVENLNAALNEFKNGKNKDFSKVT
QAKSDLENSVKDVIINQKITDKVDNLNQEVLVAKATGDFSMVEQALADLNNFSKEQLAQQAQKNESLNAGKKSEIYQSVK
NGVNGALVGNGLSQAEATTLSRNLSDIKKELNAKLGNFNNNNRLKNEPIYAKVNKKKAGQAASPEEPIYAKVNKKKAGQA
ASPEEPIYAQVAKKVNAKIDRLNQIASGLGVVGQASGFPLKRHDKVDNLSKVGLSARSEPIYATIDGLGGPFPLKRHDKV
DELIKVGLSRTQKLAQKIDNLNQAVSEAKAGFFGNLEQTIGKLKDSTKHNAENLWIQSTKKVPASLSAKLDNYA