Name : iroC
Accession : CAC43427.2
PAI name : PAI III 536
PAI accession : X16664
Strain : Escherichia coli 042
Virulence or Resistance: Virulence
Product : ABC transport protein
Function : -
Note : -
Homologs in the searched genomes : 64 hits ( 64 protein-level )
Publication :
-Dobrindt,U., "Direct Submission", Submitted (09-NOV-2000) Dobrindt U., Institut fuer Molekulare Infektionsbiologie, Univ. Wuerzburg, Roentgenring 11, 97070 Wuerzburg, GERMANY REMARK revised by [4].
-Dobrindt,U., "Direct Submission", Submitted (02-JUL-2001) Dobrindt U., Inst. f. Molekulare Infektionsbiologie, Univ. Wuerzburg, Roentgenring 11, 97070 Wuerzburg, GERMANY REMARK revised by [6].
-Dobrindt,U., "Direct Submission", Submitted (11-FEB-2003) Dobrindt U., Inst. f. Molekulare Infektionsbiologie, Univ. Wuerzburg, Roentgenring 11, 97070 Wuerzburg, GERMANY.
-Dobrindt,U., Blum-Oehler,G., Hartsch,T., Gottschalk,G., Ron,E.Z., Funfstuck,R. and Hacker,J., "S-Fimbria-encoding determinant sfa(I) is located on pathogenicity island III(536) of uropathogenic Escherichia coli strain 536", Infect. Immun. 69 (7), 4248-4256 (2001) PUBMED 11401961.
-Dobrindt,U., Blum-Oehler,G., Nagy,G., Schneider,G., Johann,A., Gottschalk,G. and Hacker,J., "Genetic structure and distribution of four pathogenicity islands (PAI I(536) to PAI IV(536)) of uropathogenic Escherichia coli strain 536", Infect. Immun. 70 (11), 6365-6372 (2002) PUBMED 12379716.
-Hacker,J., "Direct Submission", Submitted (02-OCT-1989) Hacker J., Inst. f. Genetik und Mikrobiologie, Univ. Wuerzburg, Roentgenring 11, 8700 Wuerzburg, GERMANY REMARK revised by [3].
| DNA sequence : | |
ATGCCTGCGAATCACACTCCCACACCGGCTCAGTCATGGATAGTTTGCCTGGCGCGCGTGTGCTGGGAACGTAAGAAACT
TAGTGTCATCGTGGTGGTAGCGTCAGTATCGACTATTTTGCTGGCTGCGCTGACGCCACTGCTGACAAGACAGGCTGTGA
ATGACGCACTGGCGGGCAATCCGGCCCGCCTGCCGTGGCTGGCCTGCGGGTTACTGTTGATCGCTTTTTTTGATTTCATC
GGTAACTATGTGCGCCGTGGTTATGCCGGGATGCTCTCACTCTGGGTGCAGCATACCCTCAGAGGACGGGTATTCGACAG
TATTCAAAAACTTGACGGCGCAGGCCAGGATGCGCTGCGCACCGGGCAGGTGATTTCACGGACCAACAGCGATCTGCAGC
AGGTGCATACCCTGCTGCAGATGTGCCCGGTGCCGCTGGCAGTGTTCACTTATTACATTGCCGGCATTGCCGTGATGCTG
TGGATGTCCCCTGCCATGACGCTTATCGTCGTGTGCGTACTGGTATGCCTGGCGATCACCGCGCTTCGTGCGCGTCGTAG
GGTCTTCGCGCAAACCGGAATGGCCTCGGACCAACTGGCGAATCTCACCGAACATATACGCGAGGTGCTGGCACAGATCT
CAGTGGTAAAATCCTGTGTGGCAGAGATGCGTGAAACGCACTGGCTCGATAGGCAGTCGCGGCAGATTGTGCGTGTACGC
ATCGGTGCGGTTATCTCGCAGGCGATGCCTGGGGCCACCATGCTGGCGCTACCGGTGCTCGGGCAAATCGTCCTGCTGTG
CTACGGCGGGTGGTCGGTCATGCACGGGCGGATCGATCTCGGTACCTTCGTTGCATTCGCCAGCTTCCTCGCGATGCTGA
CCGGGCCAACCCGCGTACTGGCATCGTTTCTGGTTATCGCACAGCGCACTCAGGCGTCCGCGGAGCGGGTGTTTGCACTG
ATCGACACCCGTTCACAGATGGAGGACGGGACGGAGTCGATTAACAGTCAGGTTGTCGGACTGGAACTGGAGAATATGAG
CTTTGACTACCACCATGGCGACAGACATATCCTCAGCGATATCTCCTTTTCCCTGCGCGCCGGGGAAACCGTGGCGGTGG
TGGGCGCATCGGGTTCAGGAAAATCGACCCTGTTGATGCTGCTGGCGCGTTTTTATGATCCCTGCTCCGGAAAGATATGG
CTCAACACCAGCGAAGGCCGACAAAATCTTCGCGATATCAGACTGGAGGCGCTTCGTCGCCGGGTAGGCATCGTATTTGA
AGATGCTTTTCTGTTTGCCGGTACGGTGGCGGAAAATATCGCCTATGGCCACCCTCAGGCAACGGCGGACGACATTCGCC
GTGCGGCAGCTGCTGCAGGAGCCAGCGATTTTATCAACGCCCTGCCGAAAGGCTTCGATAGCCTGTTAACCGAACGGGGT
ACGAATCTTTCCGGCGGGCAGAGGCAGCGAATAGCGCTGGCGCGGGCGCTCATTACTGCACCGGACGTGTTAATCCTGGA
TGATACCACCTCAGCGGTTGATGCTGTTACGGAAGCGGAGATTAATACCGCGCTGGGTCGCTATGCTGACGAAGGGCATA
TGCTGCTGGTGATTGCCCGACGGCGTTCAACGCTTCAGCTAGCCAGCCGGGTTGTGGTGCTGGATAAGGGCCGTATGGTG
GATACCGGAACCCCGGCAGAACTTGAAGCGCGCTGTCCGGCGTTCCGCGCACTGATGACCGGCGACAGCGATTTTCTGGC
CACGTCCCACAATAGCCACAACGAATTGTGGCCGGCTGAACCAGCGACACAAGACGATGTAACGGATACGGGGGATAAAG
GTTTTGTCGCCCGTATGACCCGCGTACCGGAAAATGCAGTACAGCAGGCGCTGGCCGGTAAAGGTCGCAAAGTCACGTCA
CTACTGAAGCCTGTGGCATGGATGTTCGTCATCGCCGCTCTGCTGATCGCACTCGATTCTGCGGCAGGCGTAGGGGTGCT
GATACTGTTGCAGCACGGCATTGACTCCGGTGTCGCCGCAGGCGATATGTCGACCATCGGCCTCTGTGCCCTGCTCGCCC
TGTGCCTGGTCATTGTGGGCTGGTGCAGTTATTCTCTGCAGACGGTCTTCGCCGCCAGAGCGGCGGAATCAGTTCAGCAT
TCGGTGCGCTTGCGCAGCTTCGGCCATATGCTGCGTCTTGGACTCCCCTGGCATGAAAAGCATGCCGATTCGCGTCTGAC
CCGCATGACCGTTGATGTGGACTCTCTCGCCCGCTTTCTGCAAAACGGCCTTGCCGGTGCGGCCACCAGTCTGGTGACGA
TGTTCGCAATCGCCGCCACCATGTTCTGGCTCGACCCGATCCTGGCGCTGACGGCATTAAGCGCAGTGCCAGTGGCCGCA
CTGGCAACCATGATTTATCGCCGCCTCAGTACCCCTGCTTATGCACAGGCACGGCTGGAAATAGGCAAAGTCAACAGCAC
CCTGCAGGAAAAAGTCTCCGGCCTGCGTGTCGTGCAATCGCATGGTCAGCAGGAACTGGAGGGCGCCCGGCTGCGCGCGT
TATCGGAGCGTTTCCGCGCAACCCGTGTGCGAGCACAAAAATACCTTGCAGTCTATTTTCCGTTTCTGACATTCTGCACC
GAGGCCTCCTATGCCGCCGTTCTGTTAGTGGGAGCTTCGCAGGTCGCCGCTGGAGAAATGACTGCCGGGGTACTGGCGGC
TTTCTTCCTGTTGCTGGGGCAATTCTATGGGCCAGTGCAGCAGTTATCAGGGATTGTCGACGCCTGGCAGCAGGCGACAG
CCAGCGGCAAACATATTGATGAACTACTGGCGACAGAAGGCACTGAGAACCTCGGGTCCTCTTCGGTCCTCCCTGTCACC
GGTGCACTGCATCTTGATGAGGTCACGTTCAGTTATCCCGACAGTCACGAGCCAGCTCTGAACAAACTTACCCTGACGAT
CCCTGAGGGAATGGTTGTCGCGGTCGTCGGTCGCAGCGGTGCGGGTAAGTCGACGCTGATTAAGCTGATTGCCGGGTTGT
ATTTCCCCACGCACGGCAACATCAGAATCGGTGTGCAAATGCTCGATGATGCCTCGCTCACTGAGTATCGTCGCCAGATT
GGGCTTGTCGATCAGGATGTAGCACTGTTTAGTAGTGATATTGCAGAAAACATTCGTTATTCACGGCCATCCGCCACCAA
TGAAGACGTTGAAATTGCCTCACAGCGGGCAGGGCTGTATGAGATGGTGTGCAATCTGCCGCAGGGATTCCGGACACCGG
TGAATAACGGCGGAGCCGATCTGTCCGCAGGTCAGCGCCAGTTGATTGCGCTGGCCCGCGCGCAACTGGCGAATGCTCAC
ATCCTGCTGCTCGACGAAGCCACGTCATGTCTGGATCGCACATCCGAAGAACGACTGATGTCATCGTTAACAGATGTCGT
GCATGCCGGGAAGCACTCGGCGCTGATTGTTGCACATCGTCTGACCACCGCGCAACGCTGCGATCTGATTGCCGTTATTG
ATAAGGGGTTACTTGCGGAATACGGAACCCACGAACAGCTGTTATCTGCAGGCGGCCTCTATACCCGCTTATGGCATGAC
AGCGTCAGCAGTACTGCGCTCCATCGCCAGCACAACATGAAGGAGGAAACCCCGGGATAG
|
| Protein sequence : | |
MPANHTPTPAQSWIVCLARVCWERKKLSVIVVVASVSTILLAALTPLLTRQAVNDALAGNPARLPWLACGLLLIAFFDFI
GNYVRRGYAGMLSLWVQHTLRGRVFDSIQKLDGAGQDALRTGQVISRTNSDLQQVHTLLQMCPVPLAVFTYYIAGIAVML
WMSPAMTLIVVCVLVCLAITALRARRRVFAQTGMASDQLANLTEHIREVLAQISVVKSCVAEMRETHWLDRQSRQIVRVR
IGAVISQAMPGATMLALPVLGQIVLLCYGGWSVMHGRIDLGTFVAFASFLAMLTGPTRVLASFLVIAQRTQASAERVFAL
IDTRSQMEDGTESINSQVVGLELENMSFDYHHGDRHILSDISFSLRAGETVAVVGASGSGKSTLLMLLARFYDPCSGKIW
LNTSEGRQNLRDIRLEALRRRVGIVFEDAFLFAGTVAENIAYGHPQATADDIRRAAAAAGASDFINALPKGFDSLLTERG
TNLSGGQRQRIALARALITAPDVLILDDTTSAVDAVTEAEINTALGRYADEGHMLLVIARRRSTLQLASRVVVLDKGRMV
DTGTPAELEARCPAFRALMTGDSDFLATSHNSHNELWPAEPATQDDVTDTGDKGFVARMTRVPENAVQQALAGKGRKVTS
LLKPVAWMFVIAALLIALDSAAGVGVLILLQHGIDSGVAAGDMSTIGLCALLALCLVIVGWCSYSLQTVFAARAAESVQH
SVRLRSFGHMLRLGLPWHEKHADSRLTRMTVDVDSLARFLQNGLAGAATSLVTMFAIAATMFWLDPILALTALSAVPVAA
LATMIYRRLSTPAYAQARLEIGKVNSTLQEKVSGLRVVQSHGQQELEGARLRALSERFRATRVRAQKYLAVYFPFLTFCT
EASYAAVLLVGASQVAAGEMTAGVLAAFFLLLGQFYGPVQQLSGIVDAWQQATASGKHIDELLATEGTENLGSSSVLPVT
GALHLDEVTFSYPDSHEPALNKLTLTIPEGMVVAVVGRSGAGKSTLIKLIAGLYFPTHGNIRIGVQMLDDASLTEYRRQI
GLVDQDVALFSSDIAENIRYSRPSATNEDVEIASQRAGLYEMVCNLPQGFRTPVNNGGADLSAGQRQLIALARAQLANAH
ILLLDEATSCLDRTSEERLMSSLTDVVHAGKHSALIVAHRLTTAQRCDLIAVIDKGLLAEYGTHEQLLSAGGLYTRLWHD
SVSSTALHRQHNMKEETPG
|
|
