PAI Gene Information


Name : tcfA
Accession : NP_454912.1
PAI name : SPI-6
PAI accession : NC_003198_P1
Strain : Salmonella enterica RSK2980
Virulence or Resistance: Not determined
Product : putative fimbrial protein
Function : -
Note : Previously sequenced Salmonella typhi and Salmonella enterica fimbrial subunit proteins TsaA or TcfA TR:Q9XDS4 (EMBL:AB029403) (236 aa) fasta scores: E(): 0, 100.0% id in 236 aa, and to Escherichia coli cs1 fimbrial subunit B precursor CsoB or CooB SW:CSO
Homologs in the searched genomes :   15 hits    ( 15 protein-level )  
Publication :
    -Parkhill,J., "Direct Submission", Submitted (25-OCT-2001) Submitted on behalf of the Salmonalla sequencing team, Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

    -Parkhill,J., Dougan,G., James,K.D., Thomson,N.R., Pickard,D., Wain,J., Churcher,C., Mungall,K.L., Bentley,S.D., Holden,M.T., Sebaihia,M., Baker,S., Basham,D., Brooks,K., Chillingworth,T., Connerton,P., Cronin,A., Davis,P., Davies,R.M., Dowd,L., White,N., , "Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18", Nature 413 (6858), 848-852 (2001) PUBMED 11677608.

    -Parkhill,J., Dougan,G., James,K.D., Thomson,N.R., Pickard,D., Wain,J., Churcher,C., Mungall,K.L., Bentley,S.D., Holden,M.T., Sebaihia,M., Baker,S., Basham,D., Brooks,K., Chillingworth,T., Connerton,P., Cronin,A., Davis,P., Davies,R.M., Dowd,L., White,N., , "Direct Submission", Submitted (10-SEP-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.


DNA sequence : 
ATGAATTTTAAAGATACTCTTCCCGGGGTGTTTCTCTGTGTCGCTATGTTTGCATGTGGTCATGCCAGGGCGAATATGCT
CGTTTATCCCATGGCGGCAGAAATTAATAGTAGCCGCGAAGAGGCCACCTCGCTGTTCGTCTATTCTAAATCAGATCATG
TGCAATATATTCGAACAAGAATCATGCGTATTGAACACCCCGGTATGCCACAGGAGAAGGAGGTACCAGCAGGGAATGAT
ATAGAGACAGGACTTGTTGTCTCCCCGGAGAAATTTGCTCTTTCCCCGGGAACAAAAAAAACAATACGTGTTATCAGTAC
TCAGGCACCGGAAAGAGAGGAAGCCTGGCGGGTATACTTCGAGGCTGTTCCTGAACTGGAAGATGATCCACAGGCAGGCG
GAAAGCAAAATTCATCCGTAAGTGTGAATCTTGTCTGGGGGGTGTTGCTGCGTGTTTCTCCGTCAGACCCCAGGCCTGCG
CTGGTAACGGACGGTCACCACCTGCTGAATACGGGAAACACACGGCTTTCTCTTATTCGGGCTGGCAACTGCGACACCAC
ATGCCACTGGCAGAATATAGGCAAAAGTATTTATCCCGGCGGGAGTGCTGATATTCCGGCCGGAATAAAAAGTAATGCAT
TTCGTGTGGAATATCGTACGGGTGCAAATTCACCGGTAATCTCTGCTGATTTAACAGCAGCCGGAAAGTAA

Protein sequence : 
MNFKDTLPGVFLCVAMFACGHARANMLVYPMAAEINSSREEATSLFVYSKSDHVQYIRTRIMRIEHPGMPQEKEVPAGND
IETGLVVSPEKFALSPGTKKTIRVISTQAPEREEAWRVYFEAVPELEDDPQAGGKQNSSVSVNLVWGVLLRVSPSDPRPA
LVTDGHHLLNTGNTRLSLIRAGNCDTTCHWQNIGKSIYPGGSADIPAGIKSNAFRVEYRTGANSPVISADLTAAGK