PAI Gene Information


Name : tsaC
Accession : NP_454914.1
PAI name : SPI-6
PAI accession : NC_003198_P1
Strain : Salmonella enterica RSK2980
Virulence or Resistance: Not determined
Product : outer membrane fimbrial usher protein
Function : -
Note : Previously sequenced Salmonella typhi TsaC TR:Q9XDS2 (EMBL:AB029403) (895 aa) fasta scores: E(): 0, 99.9% id in 895 aa and to Escherichia coli cfa/i fimbrial subunit C precursor CfaC SW:CFAC_ECOLI (P25733) (869 aa) fasta scores: E(): 0, 30.8% id in 869 aa
Homologs in the searched genomes :   14 hits    ( 13 protein-level,   1 DNA-level )  
Publication :
    -Parkhill,J., "Direct Submission", Submitted (25-OCT-2001) Submitted on behalf of the Salmonalla sequencing team, Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

    -Parkhill,J., Dougan,G., James,K.D., Thomson,N.R., Pickard,D., Wain,J., Churcher,C., Mungall,K.L., Bentley,S.D., Holden,M.T., Sebaihia,M., Baker,S., Basham,D., Brooks,K., Chillingworth,T., Connerton,P., Cronin,A., Davis,P., Davies,R.M., Dowd,L., White,N., , "Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18", Nature 413 (6858), 848-852 (2001) PUBMED 11677608.

    -Parkhill,J., Dougan,G., James,K.D., Thomson,N.R., Pickard,D., Wain,J., Churcher,C., Mungall,K.L., Bentley,S.D., Holden,M.T., Sebaihia,M., Baker,S., Basham,D., Brooks,K., Chillingworth,T., Connerton,P., Cronin,A., Davis,P., Davies,R.M., Dowd,L., White,N., , "Direct Submission", Submitted (10-SEP-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.


DNA sequence :
GTGAGTCGTTATTTCTGGATGTATTATTTACTGGGATTGTGCAGTTTTACCAGCCAGGCAACTCTTATTCCCCCTCCTGG
ATTTGAATCTCTGCTGGAAGGACAGACTGAGCAAATTGAAGTGTTGCTACCAGGGCATTCACTGGGATTATTTCCGGTGG
TGGTTAAACCGGACACCGTGCAGTTCATGTCCCCATTGATGGTACTTGAAAGCAGTGGGCTTGCCGCGTTGCCGGCCGCA
GAACGGCAAAAAGCGCTGGCTGCACTCAGCCGTCCGTTGCTACGTAACAGCAATCTGGTCTGTGGTGTCTCAGAAGCAAA
AGACAGCAGCGAGTGTGGTTACGTGGCAACAGATAAAGAGGATGTTGCGGTTATTTTTGATGAGAACAACGCTCAGTTAT
CTTTGTTTCTTAACCGGGACTGGTTGCCGGATGAAGAACGACGTGATAAACGCTGGCTGACTCCGACCCCGGAGGGTGTC
AGCGCATTTATTCACCGCCAGACGCTGTATCTGAGTGATGATCTCCACAGTCGTAATATGACACTGAATGGTAGCGGTGC
CCTGGGGCTTGGTGACGGTCGTTATCTGGGAGGCGACTGGGCGGCTATCTGGAATCAGTCAGAACATTACAATAACAGTC
AGGCCTGGTTTGACAATCTGTTTGTCCGTCAGGATCTCGGCAATCAGTATTATCTCCAGGCTGGTCGGATGGATCAGCGG
AATCTGTCCAGCGCCACGGGGGGGGATTTTGGGTTCAGTCTGCTTCCCCTGAGCCGGTTTGATGGATTACGAACCGGGAC
CACCCAAGCTTATGTTAACCATGAGGTGGACCATAATGCCACTCCGGTTATGGTTCAGGTTACCCGAAATGCCCGTATTG
ATATTTATCGTGGCAGCGAGTTGCTGGGGAGTCAGTTCCTGACCCCGGGAATGCATACCCTGGATACTCATTCTCTTCCA
CCGGGAAGCTATCCTCTGGCGTTGCGGGTGTATGAGGATGGGATTCTGCGGCGAACGGAGACCCAGCCCTTCAGTAAGGG
GGGCAATAGCTTCAGTGCACAGACCCAGTGGTTTATTCAGGGCGGGCTGGAAGATACCGGGGATAAAGCCAGCCATTATG
ACGGTGAGACTGTCATGGCTGCCGGATTCCAAACTGGGCTGCGGAAAAATATCAGTCTGACCGAAGGTATCTCTCTGGCA
CATGAGGCCTGGTACAGTGAAACCCGACTGAATTCACAGCATGCAGTGCTGGATGGCACGCTGGACCTTTCTGCCGGGAT
ACTGCATGGGACAGACAGCACGAGCGGTAACACTGAGCAGGTGACATACAACGACGGATTTTCCGCGAGTCTGTGGCGTA
ACCATACGGAAAGTGATGCCTGTAGTGGTCGTCATCCACAGTCAGTGCATGCCAGTATGACCTGCCAGACTTCGATGAAC
GCCTCCCTGTCGGTTTCGGTGGGGAACTGGTATGCCCTACTGGGATACAGTACCAGCAGGACAGAAGGTCGGCCGGTTTA
CCGGGGATATGATGATAACAGTGACAAAGAAAATGTGTTCTGGCGACAGGCATACATCCCTGCCTCTCACCGCGAATCTG
CTCAGGCTAGTGCAACGTACAGCCTTAATATGGCTGGCATGAATATTAATACCCATGGGGGAGTATGGCGAACCCGAAAT
GACGGAGTGAATGATGATGGCTTGTTTATGAGTGTCAGTGTGTCATATGCCTCTCAACCACCGACAATGACTGGCAGTAA
TAGGTATACCTCAGCCGGGACCGATATTCACAGTAGCCGGAATCAAAAAACACAGACGTCCTGGAATGTGAACCATGTGA
GATCCTGGCAGCAGGATCTGTATCGTGAACTGTCGGTGGGTTTCTCCGGTTATAACGACGACAGCTGGAGCGGGAGTCTC
GGCGGACGCATGAGCGGCCGTATGGGTGAACTGAGCGCCACTATCAGTAACTCCCATCAACGTAATGCGGGCAGCGCCAG
TTCACTCACCGCTGGCTACAGCTCGTCTCTGGCGTTATCCCGTAATGGACTGTTCTGGGGAGGTGGTCAGGACGGTGAAC
CGGCCTCTGGCATGGCGGTGAACGTGGAGTCAGAGGGGGACGAGGGCAGTAGCGGGAAAGTAGTCAGCGTTCGTGGCAGC
AGCCAGCCGTTCAGTCTCGGTTTTGGTCAGCAGTCGCTGTTGCTGATGGAAGGCTATAACGCCACGGAGGTGACCATTGA
GGATGCAGGGGTTAGTTCACAGGGTATGGCAGGCGTAAAAGCGGGAGGGGGAAGCAGGTGTTACTTCCTGACACCCGGGC
ATCTGCTGGTTCACAACATCAGCGCCAGTATGAGCCGACTGTACGTTGGCCGCGTACTGGACAAGGATGGCAGACCGCTG
CTGGACGCACAGCCACTGAACTATCCATTTTTGTCGTTGGGACCTTCCGGGCGATTTAGCCTGCAGAGCGAGCATAAAGA
ATCCAGCCTGTGGCTGCTGTCTAAAAACAGGATCCTGCGTTGTCCGATGTCAGTACATAAACGTCGGGATGTTATGCAGG
TAGTGGGTGATGTGCGGTGTGAATTAAGTGACGTGGATGCCCTGCCACAGGCGTTGCAAATATCGCCGCGGGTCATCCGT
TTGCTGAACGTGGCAGGTTTGCTGCGCCATTCCGTTCAGGAAGCCTGA

Protein sequence :
MSRYFWMYYLLGLCSFTSQATLIPPPGFESLLEGQTEQIEVLLPGHSLGLFPVVVKPDTVQFMSPLMVLESSGLAALPAA
ERQKALAALSRPLLRNSNLVCGVSEAKDSSECGYVATDKEDVAVIFDENNAQLSLFLNRDWLPDEERRDKRWLTPTPEGV
SAFIHRQTLYLSDDLHSRNMTLNGSGALGLGDGRYLGGDWAAIWNQSEHYNNSQAWFDNLFVRQDLGNQYYLQAGRMDQR
NLSSATGGDFGFSLLPLSRFDGLRTGTTQAYVNHEVDHNATPVMVQVTRNARIDIYRGSELLGSQFLTPGMHTLDTHSLP
PGSYPLALRVYEDGILRRTETQPFSKGGNSFSAQTQWFIQGGLEDTGDKASHYDGETVMAAGFQTGLRKNISLTEGISLA
HEAWYSETRLNSQHAVLDGTLDLSAGILHGTDSTSGNTEQVTYNDGFSASLWRNHTESDACSGRHPQSVHASMTCQTSMN
ASLSVSVGNWYALLGYSTSRTEGRPVYRGYDDNSDKENVFWRQAYIPASHRESAQASATYSLNMAGMNINTHGGVWRTRN
DGVNDDGLFMSVSVSYASQPPTMTGSNRYTSAGTDIHSSRNQKTQTSWNVNHVRSWQQDLYRELSVGFSGYNDDSWSGSL
GGRMSGRMGELSATISNSHQRNAGSASSLTAGYSSSLALSRNGLFWGGGQDGEPASGMAVNVESEGDEGSSGKVVSVRGS
SQPFSLGFGQQSLLLMEGYNATEVTIEDAGVSSQGMAGVKAGGGSRCYFLTPGHLLVHNISASMSRLYVGRVLDKDGRPL
LDAQPLNYPFLSLGPSGRFSLQSEHKESSLWLLSKNRILRCPMSVHKRRDVMQVVGDVRCELSDVDALPQALQISPRVIR
LLNVAGLLRHSVQEA