PAI Gene Information


Name : VC0395_A1059 (VC0395_A1059)
Accession : YP_001217005.1
PAI name : CTX
PAI accession : NC_009457_P2
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Virulence
Product : RTX protein
Function : -
Note : identified by match to protein family HMM PF07819
Homologs in the searched genomes :   4 hits    ( 3 protein-level,   1 DNA-level )  
Publication :
    -Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "A recalibrated molecular clock and independent origins for the cholera pandemic clones", PLoS ONE 3 (12), E4053 (2008) PUBMED 19115014.

    -Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "Direct Submission", Submitted (18-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.

    -Heidelberg,J., "Direct Submission", Submitted (16-MAR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.


DNA sequence :
GTGAACCGTTTGCAAATTAACGCAGGTATTCGAGCGAAAAACAGCGTTAGCAGTATGACTTCTATGTTCTCTGAAACAAA
TAGCAAGAGCATTGTTGTTCCTACCAAAGTCTCGCCTGAACCAGAGCGCCAAGAAGTGACTCGTAGAGACGTCCGTATCT
CAGGGGTGAACCTCGAAAGTCTAAGTGCGGTACAGGGAAGTCAACCAACGGGTCAACTGGCTTCGAAAAGTGTCCCCGGA
TTTAAAAGCCATTTCGCATCGACATCCATTGGTATAGAAAATGAGTTATCCGGTCTGGTGGTGGTTTTACCGAAAAACTC
AGCGCAGACTTTTGGCTATGTGCATGATTCACAAGGTAACCCATTGTTCATGCTAACCAAGGATATGAATCAAGGTGGTT
ATAGCAACCCAGTGGGTATCAATGATATTCAAGGGGTGAACAACTGGCAGACGCATACGATTGAACTGGTTACATATCCT
AGTGAAATCAGTGATACAGCAGCGGTTGAAAGTCGTAAAGAGGCAATGCTATGGCTTGCGAAAGAGTTTACCGATCATAT
CAATCAGTCTAACCACCAAAGCTTACCTCATTTAGTGAGTGATGACGGTCGTTTCACTCTGGTTATATCGAACTCTAAGC
ATCTTATTGCGGCGGGTAACGGAACCTCTATTGATGCACAAGGCAAGACCATAGGAATGACCCCTAGTGGCCAACAAGCA
ACAATGGCGATCAGTGCGAAAGAATTTGGTACAAGCTCGTCGCCGGAAGTCAGACTGCTTGAATCTGCGCCTTGGTATCA
AGCAGGGTTGAGAGATGAGTTTTTAGCAAACGCGAAAAACACCACGTTGGATGATCCCGCTACAGCACAAAATGTGTATG
CCTATCTCACGTCTGTCTATTCAAAAACAGCAGATTTGGCCAAAGAGTATGGGATCTACATCAATGATTGGGATCCTGCC
TCTGAAGGTTTTTCACCGAATGCTCAAGGGTTAACGGATCCGAAAGTCAAAAATGCTTGGAGCATATTGCCAAGAACTAA
ACCCGTTAGAATGCTGGAACTTCTGAGTGCGGAAGACTCACGCTACGTAAGGCAACAAATTGCGGAAAAGCTGAAAGGCA
CCTATTCAGAAAGCCTTGCTAAGAACGTGTTTGAATACTTCCAATATGGTGGAGAAGTCGCTGGACATGGAATCAATAAT
GCGACGACAGGAAGTGTGCAACAGCCTGAACCAGCGATCTTATTTGAGTTTCGCAGTGTACCGAGTGCATTAAGTGACTT
TGTACCCAAAACAGCGTCAACGGTGAAAGTGGATGTTAAGGCACTCGATCATTTTGACTCGGCAAGCCGTAAAGCCATCA
TTACTGAAGTAAATGCTTTGGTTAGCGGTAGTGAGGATTTCGATGCTTGGTATCAGGAGTATCGAGCAAGCAAAGGACAG
CCGCCAGTCAAAAATCCTAAGTCCAGTGCATCCGCCAATCACAAAGCTGAATGGTTGATGACGCAGCATGCTGAACAATG
GGCGAAAATTACCGCTCCTTATACTGATAACCATGAGACGCTCACATCTACCAAGCTTGCTTCTAACGATAAAGAAGAAT
TACACGCTTTAGGTGAAACGTCGAATCTAGAGAATAACAAGCAGCAAGAAAACGTCGCTTCCATAATTAACACCATGTTA
AATGACATGCTGCCATTCTATGCACTTCGTACCGAACGAAATCTACTGGTACAAGAAGGAGATGAAGGCTTCGAAGTGCG
TGCTTGGCCAGGAACCGAAGACAAGAGTAAAACCATTATTCTTGAGGATCCTGAAGACGCGGCTCAGCACAAAGCCATCG
AACGCTTCATTCTGGCCAACTTCGATAATTTCGAACAAATGCCAGACGAGCTCTTCTTGGTGGATAACAAAGTGATTTCA
CACCATGAAGGTCGTACACATGTGTTGGCGCAAAAAGTCGATGGTGCATGGCAATACAACGCCACAGTCGAGCTGATGTC
AGTCACTGAACTACTGGATGCGGCGAATGTAACGGGTAAGATCCGCGGTGAAAGCTATCAGCAAGTGATCGACGCATTGA
CTGATTACCACGCCAGCATCACTGAGCACGCAGATTATGAACCGGAGTCCGTGGAAAAACTGCTCAACTTGCGTAAAAAA
ATTGAAGGTTATGTACTCGGACACCCAGACTCAGGCCGTGTTGAAGCGATGAATTCACTGTTAAATCAGGTGAATACGCG
TTTAGATGAAGTTTCACTGCTGTCAGTTGCTGAGCAAACTATCCAAGCGCAAAACAGTTTCAGCCGACTATATGACCAGC
TAGAAGCCGCTAACTTGAAAGAGAGTAAGCACCTTTATCTGGATCAAAATGGTGACTTTGTTACCAAAGGCAAAGGTAAT
CTTGCCAATATCGATCTGCTAGGTAGCCGCGAAGCTGTGCTTGAAAAAGTGAAGTTAACAGTAAGTAACGAGTACGGTCA
AACCGTTGCGGATACAATTTTTGCTGGATTATCAGCCAAAGATCTTGCCAAAGACGGTAAAGGGGTTGATATCGCGGGTT
TGAATAAAGTACATCAAGCGATTGAACAGCATCTGTCACCTGTCAGCGCCACGTTGTACATTTGGAAACCGAGTGATCAT
AGCGCGCTAGGTCATGCCGCATTGCAAATAGGCCAAGGTCGCACGCAACTTGAAGGTCAAGCTGCAGCTGATTTTAACCA
GCAAAATTACGTAAGCTGGTGGCCACTAGGCAGCAAGTCATCCAATATCAGCAATATCTTGAATGTGGCCACAAAAGACC
AACCTGATCTTAAGCTGCGCTGGAGCGACTTCAGTCAACCTGCACATCAAAATGACACGCTTGAGCATGATGTTGCTTCG
GAAGAAAACGATGGCTTTGGTTTGCATGATGGCGACATTAAGCTGAAACGCTTTATCGAGAAGCTCAATGCCGCGAAAGG
AATTGACGCTTCATTTAAAGAGGCTTCTGAAGGTTACGCGAGCGTACTACTGGGTAACCCAGATATGCTCGAAACGACAG
GTATTCCTGCACATGTTTTCCAACCATTTGTCGAACAATGGAATGACACCAGTTATGACATGATGGACGTGGCACACCGT
TTTGCGCAAGAGCTCAGACTACAGGCTCAAAGAAGTGACGATCCCGAACTGCTTGAAAAGCGCATCGGCAATGTGATTCG
CCAATTTGCAGAAAGAGCACTGGAAGAGATCGAAACCTTCAAAGCAAGCCAAGCCGATCAAGGTCGAGTATTCCGAATTA
ACCTTGAAGGCCTCGATGTGGCGGCAATGCAAGCAGAATGGCATCGTCTAAGCAACGATCCGGATGCTCGTTATCAATTA
CTGACCAAAAACTGCTCCAGCACAGTGGCTAAAGTGTTGAAAGCCGGCGGGGCGGATAAACTGATTGGCCATACATGGCT
GCCTAAGTTTGGTGTTTGGACGCCGACCGAGCTTTTCAACTTTGGTCAGGCACTGCAGGAAGCTCAGCTGGAAATTGCCG
CGAAGAAGCAAAGTCATCAAGTCACTGATGTCCTTGATGCCTTGTCAGGCAATGAGAAGCCTAAAGAAAACGTGGCGATT
GAAAATGATGGTACGCCACCGCGCGATAAAGAATCTCTGAGCCCATTGACTCGATTCCTCAATAACGAGTTGTATGGTGA
TAAAGAGGCTCGCCGTAAGATTGGCGAAATCACGCAAACCCTACTTGATCACGCGGTGGAAAAAGGTGAATCGCAGAAAA
TCACTCTGCAAGGAGAAGCGGGCCGTCTAACGGGGTATTACCATCAGGGAACAGCCCCAAGCGAAGGTGAAACGAGCTCG
CCAAGCGGCAAAGTCGTATTGTTCCTGCACGGTTCTGGTTCTTCTGCTGAAGAGCAAGCGAGCGCGATTCGAAATCACTA
CCAGAAGCAAGGTATCGATATGCTCGCAGTCAACCTGCGTGGCTATGGTGAAAGCGACGGTGGACCAAGCGAAAAAGGCT
TGTACCAAGATGCTCGCACCATGTTCAACTACCTAGTGAATGATAAGGGTATTGACCCAAGCAACATCATCATTCACGGC
TACTCAATGGGCGGTCCAATTGCCGCAGATTTAGCACGTTATGCCGCGCAAAACGGCCAAGCGGTGTCTGGCTTATTGCT
TGACCGTCCTATGCCAAGCATGACCAAAGCAATCACCGCTCACGAAGTGGCGAATCCAGCGGGCATTGTGGGGGCTATCG
CGAAAGCGGTTAACGGCCAGTTCTCTGTAGAGAAAAATCTCGAAGGTTTGCCAAAAGAGACATCCATTCTGCTGTTGACC
GATAACGAAGGTTTGGGTAACGAAGGTGAGAAACTTCGTACCAAACTCACTGCCTCTGGTTACAACGTCACTGGCGAGCA
GACATTCTATGGTCACGAAGCAAGCAACCGTTTGATGAGTCAATATGCGGATCAAATTGTCTCCGGTTTGTCCAGCAGTG
CAAGTGTAGATGAAGACCTAGATCAACAAGGGTTGGATACCACATCAACCAAGGATCAAGGTATCTCAAATAAGAATGAT
CATCTGCAAGTGGTGGATAGTAAAGAAGCATTAGCGGATGGAAAAATACTCCATAATCAAAATGTTAATAGCTGGGGCCC
GATTACGGTTACACCAACGACAGATGGTGGTGAAACCCGCTTCGACGGTCAAATCATCGTTCAAATGGAAAACGACCCGG
TAGTAGCAAAAGCGGCAGCCAATTTAGCAGGTAAACATGCTGAAAGCAGTGTGGTGGTGCAGCTCGATTCAGACGGCAAC
TATCGCGTGGTGTATGGCGATCCGTCAAAACTGGATGGAAAGCTACGTTGGCAGTTGGTGGGGCATGGTCGCGACCACTC
AGAAACTAACAATACTCGCTTAAGTGGTTACAGTGCCGATGAGTTGGCCGTGAAATTGGCCAAGTTCCAACAGTCGTTTA
ATCAAGCCGAAAACATCAACAACAAACCGGATCACATCAGTATTGTTGGTTGTTCTTTGGTGAGTGACGACAAGCAAAAA
GGCTTTGGTCATCAGTTTATTAACGCGATGGATGCGAATGGTCTTCGTGTCGATGTCTCTGTTCGTAGTTCTGAACTGGC
CGTAGACGAGGCGGGACGTAAGCATACCAAGGACGCGAATGGCGATTGGGTTCAAAAGGCAGAAAACAACAAAGTTTCGC
TAAGCTGGGACGCGCAAGGTGAAGTTGTTGCCAAGGATGAACGTATTCGCAATGGTATTGCGGAAGGCGACATCGATCTC
TCTCGTATTGGTGTCAACAATGTCGATGAACCTGCTCGTGGCGCGATCGGTGACAATAATGACGTGTTTGATGCGCCAGA
AAAACGCAAACCAGAAACGGAAGTGATTGCCAATTCTAGCAGCAGTAATCAATTCAGCTACTCAGGTAACATTCAAGTTA
ACGTGGGCGAAGGGGAGTTTACGGCGGTGAACTGGGGGACATCGAATGTGGGCATTAAAGTCGGTACTGGTGGCTTTAAA
TCGCTGGCCTTTGGTGACAATAACGTTATGGTTCATATCGGTGACGGTGAAAGCAAACACAGTGTTGATATCGGTGGCTA
TCAAGCACTGGAAGGTGCGCAAATGTTCCTCGGTAACCGTAATGTGAGCTTTAATTTCGGACACAGTAATGATCTGATCC
TAATGATGGATAAGTCGATCCCAACTCCACCACTCGTCAATCCATTCGACGGTGCCGCACGTATTTCTGGTGTGTTGCAA
GGTATTGCTACGTCTGGAGAGGGAGAAGATTGGCTTGCCGCTCAAGAGCAGCAATGGACACTGTCTGGCGCGAAGAAGTT
CGTCAAAGATATGTCTGGTTTGGATCAAAGTAGCAGTGTGGATTACACCACATTAGTTGAATTGGATTCACAAAATGAAC
GTGATAGCCGTGGCCTGAAGCACGATGCAGAAGCGACACTGAATAAGCAATACAATCAGTGGCTAAGCGGTAACGGTAAT
AGTGGCACGAGTCAGCTCAGCCGCGCTGATAAGCTTCGTCAAGCCAATGAAAAGCTAGCATTTAACTTTGCCGTAGGTGG
ACAAGGGGCGGATATTCAAGTCACGACGGGTAACTGGAACTTTATGTTCGGCGATAACATTCAGTCGATTTTGGATACCA
ACTTAGGTTCACTGTTTGGTCTCATGACGCAGCAGTTCACCGCAACGGGACAAGCAAAAACCACCTTCACTTATACGCCA
CAAGATTTGCCGCGCCAGCTCAAGAATAAGCTACTCGGCCAGTTAGCTGGAGTAGGGGCTGAAACGACATTGGCGGATAT
TTTTGGTGTGGATTACACCGCGTCAGGTCAAATTGTTTCGCGTAATGGTCAAGCCGTCGATGGAGTGGCGATTCTCAAAG
AGATGCTGGAAGTCATCGGTGAGTTCAGCGGAGATCAACTGCAGGCTTTTGTCGACCCAGCTAAGTTACTGGATAGCTTG
AAAGCGGGTATCGACATGGGAGCGGATGGCATCAAGTCTTTTGCTGAAACTCATGGGCTGAAAGAGAAAGCGCCTGAAGA
GGAAAAGGACAATTCTTCGGTTTCTGTTAATGGTGCGAACGTGAACAGTGCGCAAGGTGCGACTGTGGCTGATGGCAATA
CTGAAACAGCAGAAACACAAGATCGTGCCTTTGGCTTTAACTCGCTTAACCTGCCTAACTTGTTTGCGACTATTTTCAGC
CAAGATAAGCAGAAGGAAATGAAGTCACTGGTGGAGAATCTTAAACAGAATCTCACCGCCGATCTGCTGAATATGAAGGA
GAAAACGTTTGATTTCCTTCGTAATAGTGGCCATCTCCAAGGAGATGGTGATATCAACATCTCCCTAGGAAACTACAACT
TCAACTGGGGTGGTGATGGTAAAGATCTCGGTGCGTATCTCGGAGATAACAACAACTTCTGGGGTGGACGAGGCGATGAT
GTGTTCTACGCAACAGGCAAGTCAAACATCTTCACGGGTGGAGAAGGCAACGACATGGGCGTTCTGATGGGGCGTGAAAA
CATGATGTTTGGTGGTGATGGCAACGACACGGCAGTGGTTGCTGGACGCATTAACCATGTCTTCCTTGGTGCTGGTGACG
ACCAGTCGTTTGTCTTTGGCGAAGGTGGTGAAATTGATACCGGTTCAGGCCGTGACTATGTGGTGACTTCTGGCAACTTC
AACCGTGTGGATACGGGAGATGATCAAGACTACTCCGTTACGATTGGCAACAATAACCAAGTGGAACTCGGAGCAGGTAA
TGACTTTGCCAATATCTTTGGTAACTATAACCGTATCAATGCCGGTGCGGGTAACGATGTGGTGAAACTGATGGGTTACC
ATGCCGTGCTAAACGGTGGTGATGGAGATGATCACCTGATTGCAACGGCCATCTCTAAGTTCAGCCAGTTCAACGGTGGT
GAAGGCCGTGATCTGATGGTACTTGGTGGTTATCAAAATACTTTCAAAGGTGGCACGGATGTGGACAGCTTTGTGGTGAG
CGGTGATGTTATCGACAACCTTGTGGAAGACATTCGCAGCGAAGATAACATTGTCTTCAATGGTATCGATTGGCAGAAAC
TGTGGTTCGAGCGCAGCGGGTATGACCTGAAACTGTCGATTTTGCGTGATCCGTCTAACGACAGTGACCAATCGAAGTTT
GAGCATATTGGTTCGGTGACATTCAGTGATTACTTTAATGGTAACCGCGCTCAAGTGGTTATCGGAATGAGTGAGAAAGA
CCTGTCGGGTGAACGTGAATACACCATGTTATCGGATAGTGCGATTGACGCTCTGGTTCAAGCGATGAGTGGTTTTGAAC
CGCAAGCGGGTGACAATGGCTTTATCGACAGCCTAGAGAGTAAATCTCAAGCTGCGATCAGCATGGCGTGGTCAGACGTG
GTTCACAAAAAAGGATTGATGGTGTAA

Protein sequence :
MNRLQINAGIRAKNSVSSMTSMFSETNSKSIVVPTKVSPEPERQEVTRRDVRISGVNLESLSAVQGSQPTGQLASKSVPG
FKSHFASTSIGIENELSGLVVVLPKNSAQTFGYVHDSQGNPLFMLTKDMNQGGYSNPVGINDIQGVNNWQTHTIELVTYP
SEISDTAAVESRKEAMLWLAKEFTDHINQSNHQSLPHLVSDDGRFTLVISNSKHLIAAGNGTSIDAQGKTIGMTPSGQQA
TMAISAKEFGTSSSPEVRLLESAPWYQAGLRDEFLANAKNTTLDDPATAQNVYAYLTSVYSKTADLAKEYGIYINDWDPA
SEGFSPNAQGLTDPKVKNAWSILPRTKPVRMLELLSAEDSRYVRQQIAEKLKGTYSESLAKNVFEYFQYGGEVAGHGINN
ATTGSVQQPEPAILFEFRSVPSALSDFVPKTASTVKVDVKALDHFDSASRKAIITEVNALVSGSEDFDAWYQEYRASKGQ
PPVKNPKSSASANHKAEWLMTQHAEQWAKITAPYTDNHETLTSTKLASNDKEELHALGETSNLENNKQQENVASIINTML
NDMLPFYALRTERNLLVQEGDEGFEVRAWPGTEDKSKTIILEDPEDAAQHKAIERFILANFDNFEQMPDELFLVDNKVIS
HHEGRTHVLAQKVDGAWQYNATVELMSVTELLDAANVTGKIRGESYQQVIDALTDYHASITEHADYEPESVEKLLNLRKK
IEGYVLGHPDSGRVEAMNSLLNQVNTRLDEVSLLSVAEQTIQAQNSFSRLYDQLEAANLKESKHLYLDQNGDFVTKGKGN
LANIDLLGSREAVLEKVKLTVSNEYGQTVADTIFAGLSAKDLAKDGKGVDIAGLNKVHQAIEQHLSPVSATLYIWKPSDH
SALGHAALQIGQGRTQLEGQAAADFNQQNYVSWWPLGSKSSNISNILNVATKDQPDLKLRWSDFSQPAHQNDTLEHDVAS
EENDGFGLHDGDIKLKRFIEKLNAAKGIDASFKEASEGYASVLLGNPDMLETTGIPAHVFQPFVEQWNDTSYDMMDVAHR
FAQELRLQAQRSDDPELLEKRIGNVIRQFAERALEEIETFKASQADQGRVFRINLEGLDVAAMQAEWHRLSNDPDARYQL
LTKNCSSTVAKVLKAGGADKLIGHTWLPKFGVWTPTELFNFGQALQEAQLEIAAKKQSHQVTDVLDALSGNEKPKENVAI
ENDGTPPRDKESLSPLTRFLNNELYGDKEARRKIGEITQTLLDHAVEKGESQKITLQGEAGRLTGYYHQGTAPSEGETSS
PSGKVVLFLHGSGSSAEEQASAIRNHYQKQGIDMLAVNLRGYGESDGGPSEKGLYQDARTMFNYLVNDKGIDPSNIIIHG
YSMGGPIAADLARYAAQNGQAVSGLLLDRPMPSMTKAITAHEVANPAGIVGAIAKAVNGQFSVEKNLEGLPKETSILLLT
DNEGLGNEGEKLRTKLTASGYNVTGEQTFYGHEASNRLMSQYADQIVSGLSSSASVDEDLDQQGLDTTSTKDQGISNKND
HLQVVDSKEALADGKILHNQNVNSWGPITVTPTTDGGETRFDGQIIVQMENDPVVAKAAANLAGKHAESSVVVQLDSDGN
YRVVYGDPSKLDGKLRWQLVGHGRDHSETNNTRLSGYSADELAVKLAKFQQSFNQAENINNKPDHISIVGCSLVSDDKQK
GFGHQFINAMDANGLRVDVSVRSSELAVDEAGRKHTKDANGDWVQKAENNKVSLSWDAQGEVVAKDERIRNGIAEGDIDL
SRIGVNNVDEPARGAIGDNNDVFDAPEKRKPETEVIANSSSSNQFSYSGNIQVNVGEGEFTAVNWGTSNVGIKVGTGGFK
SLAFGDNNVMVHIGDGESKHSVDIGGYQALEGAQMFLGNRNVSFNFGHSNDLILMMDKSIPTPPLVNPFDGAARISGVLQ
GIATSGEGEDWLAAQEQQWTLSGAKKFVKDMSGLDQSSSVDYTTLVELDSQNERDSRGLKHDAEATLNKQYNQWLSGNGN
SGTSQLSRADKLRQANEKLAFNFAVGGQGADIQVTTGNWNFMFGDNIQSILDTNLGSLFGLMTQQFTATGQAKTTFTYTP
QDLPRQLKNKLLGQLAGVGAETTLADIFGVDYTASGQIVSRNGQAVDGVAILKEMLEVIGEFSGDQLQAFVDPAKLLDSL
KAGIDMGADGIKSFAETHGLKEKAPEEEKDNSSVSVNGANVNSAQGATVADGNTETAETQDRAFGFNSLNLPNLFATIFS
QDKQKEMKSLVENLKQNLTADLLNMKEKTFDFLRNSGHLQGDGDINISLGNYNFNWGGDGKDLGAYLGDNNNFWGGRGDD
VFYATGKSNIFTGGEGNDMGVLMGRENMMFGGDGNDTAVVAGRINHVFLGAGDDQSFVFGEGGEIDTGSGRDYVVTSGNF
NRVDTGDDQDYSVTIGNNNQVELGAGNDFANIFGNYNRINAGAGNDVVKLMGYHAVLNGGDGDDHLIATAISKFSQFNGG
EGRDLMVLGGYQNTFKGGTDVDSFVVSGDVIDNLVEDIRSEDNIVFNGIDWQKLWFERSGYDLKLSILRDPSNDSDQSKF
EHIGSVTFSDYFNGNRAQVVIGMSEKDLSGEREYTMLSDSAIDALVQAMSGFEPQAGDNGFIDSLESKSQAAISMAWSDV
VHKKGLMV