PAI Gene Information


Name : rstA1 (VC0395_A1066)
Accession : YP_001217012.1
PAI name : CTX
PAI accession : NC_009457_P2
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Virulence
Product : RstA1 protein
Function : -
Note : identified by match to protein family HMM PF02486
Homologs in the searched genomes :   17 hits    ( 17 protein-level )  
Publication :
    -Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "A recalibrated molecular clock and independent origins for the cholera pandemic clones", PLoS ONE 3 (12), E4053 (2008) PUBMED 19115014.

    -Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "Direct Submission", Submitted (18-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.

    -Heidelberg,J., "Direct Submission", Submitted (16-MAR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.


DNA sequence :
ATGAAAAAGCAGATTTTCACTCTTGATGAATTACAACTCGATACAAACGCTTCTCCGTTTGTTTTTGTCGATTATCTTGC
TTGGTCGGTTCCTTATGCTTCATTCCGTCACGCGCATAAGTCCGATTTGTCCTCGCTTATCTGGGCGCCTCTTCCTAAGC
CTGATTACCGTATGGCTCGCACACCTGAGCAAAAAGAGAAGTTAATCGAGCTTTATAAGCAGAAGTGGAACGTTGCCATG
ATGGAACGCTTGGAGGTCTTTTGCCTTCATGTTCTTGGTCTTCGTATGTCGCCTTGGCGCGATAAGGGGCTTTATGGGTA
TGAAAACTCATGCCATTTGATGTCTAAGTACTCCAATAAACACGTGGGCTTTGTTGCGCTAGGGGGAAACCGTAATACCT
GTTACTTCCAAATTGAGGGAGTAGGGTGTCGAACCGTGTTAGAGCACACCTCTTTATTCCGTCTTCATTGGTGGCTCGAT
TTATTAGGTTGCTCTCGTCTGTCTCGTATTGATTTAGCCGTTGATGACTTTCACGGTTTGTTTGGCCGTGAGTACGCCAA
AAAAGCCTATTCCGATGACGCCTTTCGCACCGCTAGAGCGGGACGTGCCCCTAACGGTGGTGAGCGATTAGTCTCTGAGC
CTAATGGCAAAATCATCAATGAATCTTTCGAGGTAGGCTCTCGTGAATCTCGCATTTACTGGCGTATCTACAACAAGGCT
GCTCAGCTTGGTTTAGATATGCACTGGTTTCGTAATGAGGTCGAGCTTAAAGATATGCCTATCGACGTTCTGCTCAATAT
CGAGGGGTATTTTGCAGGTTTGTGCGCGTACTCGGCCTCAATTATCAATTCCTTGCCTGTCAAGGTGGTCACAAAAAAGC
GTCAAGTGGCGCTTGATATCCACTCACGCATTAAGTGGGCTCGTCGTCAGGTCGGTAAGACGTTGTTTGATATTTCAAAG
CATTTTGGTGGTGATTTGGAAAGGGTGTTTGGGGCGTTGATTTCTAAGGAAATTCACGACGATTCACTCAACCTTCCAGA
TTCTTATATGAAGTTAATTGATGAAATTATGGGTGATTAA

Protein sequence :
MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAM
MERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLD
LLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKA
AQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISK
HFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD