PAI Gene Information


Name : pelA1 (CMM_0043)
Accession : YP_001220782.1
PAI name : chp/tomA region
PAI accession : NC_009480_P1
Strain : Clavibacter michiganensis NCPPB 382
Virulence or Resistance: Not determined
Product : hypothetical protein
Function : -
Note : putative pectate lyase (NP_625403.1| putative secreted lyase [Streptomyces coelicolor A3(2)]; CAB40884.1| pectate lyase [Bacillus sp. BP-23]). pfam03211, Pectate_lyase, Pectate lyase.; Function unclear
Homologs in the searched genomes :   5 hits    ( 5 protein-level )  
Publication :
    -Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity", J. Bacteriol. 190 (6), 2138-2149 (2008) PUBMED 18192381.

    -Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "Direct Submission", Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.

    -Linke,B., "Direct Submission", Submitted (10-MAY-2007) Linke B., Center For Biotechnology, Bielefeld University, Universitaetsstrasse 25, 33501 Bielefeld, GERMANY.


DNA sequence :
ATGCCCCCTGTTCCCACGACCCAACGCCATCACCTCGTCACGAGACCCTGGGTGGTTGTGCTCGTCATCCTCGTCGCTGT
CGGAGGCATCGCGACGGCGCCCGCTTCCTCGGCTCACGCTGCAGGGCTCCCCGCGCAGGGGTCATCGATCTCGACCTTGC
CGGCCTTCCCGGCACCCACGTCGGTCAAGCCGCCGCGGGCGACGCCGTATGAAGTACCCGCCGGTCAAACCGTCGACTAC
GGCAACGCGGAGCTCAACGGGTCAACCTCTGGGCGTGGTGAGTTCCAGCAACCAGTCATCCTCGTCCACCCGGGAGGAAC
GGTGAAGAACGTGATCATCGGCTCGCTCGCAGCCGACGGCATCCACTGCGAAGCATCCTGCACCATCGAGAACATGTGGT
CCAGCCACGTCGGCGAGGACGCCGTGACCCTCCTCGACGGATCCCCGACGTCCTCCGTCGTCACCATCCAGGGCGGAGGC
GTCCAGCACGCGTACGACAAGGTCGTCCAGATGGATGGCGCCGGCACTGTCCGGATCATGCACTTCGCCGCGTCCGACAT
TGGCTCCCTCGTGCGTTCCTGCGGTAACTGCCCGCACCAGTACCCGCGGCACATGGTGGTCAGCGACGTCTTCATCGACG
GTGGCCGTTACAAGGTCGCCGGCGTCAACCAGAACTTCGGCGACACCGCCAAGCTCGACCACATCACCATCCGCGGAACA
CGCATGCAAGTCTGCGACAGGACCATCGGTGGCCGCGGCACGCCTGCGAAGGAGGTACCCGGCGGGAGCGGAGACCCCTA
CCCGGGCGTATGCGACTTCAGCTACGCCACCATCCTCTTCGAACACGGATGA

Protein sequence :
MPPVPTTQRHHLVTRPWVVVLVILVAVGGIATAPASSAHAAGLPAQGSSISTLPAFPAPTSVKPPRATPYEVPAGQTVDY
GNAELNGSTSGRGEFQQPVILVHPGGTVKNVIIGSLAADGIHCEASCTIENMWSSHVGEDAVTLLDGSPTSSVVTIQGGG
VQHAYDKVVQMDGAGTVRIMHFAASDIGSLVRSCGNCPHQYPRHMVVSDVFIDGGRYKVAGVNQNFGDTAKLDHITIRGT
RMQVCDRTIGGRGTPAKEVPGGSGDPYPGVCDFSYATILFEHG