PAI Gene Information


Name : CMM_0081 (CMM_0081)
Accession : YP_001220820.1
PAI name : chp/tomA region
PAI accession : NC_009480_P1
Strain : Clavibacter michiganensis NCPPB 382
Virulence or Resistance: Not determined
Product : putative short-chain dehydrogenase/reductase
Function : -
Note : putative oxidoreductase(ZP_00229014.1| COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Kineococcus radiotolerans SRS30216]; YP_004276.1| short chain dehydrogenase [Thermus thermophilus HB27]). InterPro
Homologs in the searched genomes :   26 hits    ( 26 protein-level )  
Publication :
    -Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity", J. Bacteriol. 190 (6), 2138-2149 (2008) PUBMED 18192381.

    -Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "Direct Submission", Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.

    -Linke,B., "Direct Submission", Submitted (10-MAY-2007) Linke B., Center For Biotechnology, Bielefeld University, Universitaetsstrasse 25, 33501 Bielefeld, GERMANY.


DNA sequence :
ATGCAGATTCACGACAAGGTCTTCGTCGTCACCGGAGGCGGCAACGGCATGGGCCGACAGGTCGCTCTCGAGATCATGCG
TCGAGGCGGTCACGTCGCGGCGGTCGACCTCAACGAGAACGGCCTCGCCGACACACTACAGCTCGCGCAGAGCAGTACAG
GCCGCCTGACCGTGCACACCGCGAACGTCACCGACCGGAATGCCATCGCCGTGCTCCGCGACGAAGTGCTGATGCAGCAT
CCTCACGTCGACGGCGTCATCAACATCGCCGGGATCATCCACTCCTTCGCCCCGTTCGAGGAGCTCCCCATCGACGTGAC
TCAACGGGTCATGGATGTCAACTTCTGGGGAACCGTCAACGTGTGCCGCGCGTTCCTCCCGATCCTGCGCTCCCGTCCCA
GCGCCGCGCTGGTCAACATGTCGAGCCTGTCAGCGCTCATCCCGTTTGCCAGCCAGACGTTCTATGGAGCCAGCAAAGGG
GCGGTCAAGCAGTTCAGCGAAGGTCTCTACGCAGAGGCGCTGGGCACCGGCCTCACTGTCTCGACCATCTTCCCCGGCAA
CATCTCCACGAACCTCACCGGCAACTCGGGCGTCGCGATGATCGACGCCAAAGGCAAGAAGGTCAAAGCCACGACTCCGG
AGGATGCGGGACGGGCGATCGTCGACGGGATCGAGAGGAGCAAGTTCCGCATCCTCGTGGGAAGTGACGCTCGTCTCCTC
GACCGACTCGTCCGCCTGGCCCCGCGCTGGGCGACGGGTATGATCGCCAGGCAGATGGCGTCCGTGCTGTAA

Protein sequence :
MQIHDKVFVVTGGGNGMGRQVALEIMRRGGHVAAVDLNENGLADTLQLAQSSTGRLTVHTANVTDRNAIAVLRDEVLMQH
PHVDGVINIAGIIHSFAPFEELPIDVTQRVMDVNFWGTVNVCRAFLPILRSRPSAALVNMSSLSALIPFASQTFYGASKG
AVKQFSEGLYAEALGTGLTVSTIFPGNISTNLTGNSGVAMIDAKGKKVKATTPEDAGRAIVDGIERSKFRILVGSDARLL
DRLVRLAPRWATGMIARQMASVL