Name : tomA (CMM_0090)
Accession : YP_001220829.1
PAI name : chp/tomA region
PAI accession : NC_009480_P1
Strain : Clavibacter michiganensis NCPPB 382
Virulence or Resistance: Not determined
Product : tomatinase, endo-1,4-beta-glycosidase
Function : -
Note : tomatinase, glycosyl hydrolase, family 10 (ZP_00192175.3| COG3693: Beta-1,4-xylanase [Kineococcus radiotolerans SRS30216]; CAA10112.1| tomatinase [Fusarium oxysporum f. sp. lycopersici]). , pfam00331,Glyco_hydro_10, Glycosyl hydrolase family 10.; High con
Homologs in the searched genomes : 2 hits ( 2 protein-level )
Publication :
-Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity", J. Bacteriol. 190 (6), 2138-2149 (2008) PUBMED 18192381.
-Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "Direct Submission", Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Linke,B., "Direct Submission", Submitted (10-MAY-2007) Linke B., Center For Biotechnology, Bielefeld University, Universitaetsstrasse 25, 33501 Bielefeld, GERMANY.
| DNA sequence : |  |
ATGAGAACACTGACATCCGCAGCCCTCGCGACCACCGTCGCTCTAGGGCTGACACTGATCGCGGCAGTCCCCGCGAGGGC
ATCGACCGGCGATGGACCTACGCTGCGTGAGCTGGCCGAGCCGGCCGGTCTCACGATCGGATCCGGCTCGATCAAGGCCG
CGGAGTGGACGAAGGACGACCGCCCGTCGAACTACCTGACCGATCCGCGGTTCGCCGACACCCTCGCCGAACAGTTCAAT
GGCCTTTCTCCCGAGAACGAGATGAAATGGGCCTTCACGCAACCCGAAGAGGGTGTGTACGACTTCGCTGGGCTTGACCG
ACTGGTCGCCTTCGCCGAAGAGCACGACATGGCGGTAAAGGGCCATGGTCTGATCTCCAGCTGCTGCGATCCGGAGTACG
TGACCTCGATCACGGATGCCGGCGAGATGCGGGCGGCGATGACAGAGCACTTCACCACTGTGATGGAGCGTTACGACGGA
AGGATCGATCGGTGGGACGTTGTCTCTGAAGCGCTCGAGTCGCAAGGTACGACGCTTCAAAGCACCACCTTCTTTAAGGT
CCTCGGTCCCGGGTACATCGCTGACGCCTTCCGCATCGCGCGAGCAGCCGACCCGGACGCGAAGCTCTTCATCAACGAGA
ACCTGGTCGAGTTCGATGCGGCGAAGCGGCAGGCGTTCCTCGACCTGCTCACCGGGCTGGTCGCCGAAGGCGTACCCGTC
GACGGAGTCGCGCTCCAGATGCACGAGACGTTCGCCGGCCCTCTCCCCGGAGTGATCACCGAGATGGTCGACTCGTACCG
TGCGCTTGGTCTTGACGTCGAGATCGCCGAGCTCGATGTGCACACCTACGACCCCGTCTCGCAGGCGACCATCTACGGTG
ACGTCGTAGCCGAGGCTCTCGCGGCCGGCGTGACGGAGATCAGCACTTGGGGCTTCACGGACAAGCACCTCTACACCTGG
CTCCCGGGAGCCAAGCCACTGATCTTCGACGAGGAGTACGGCCCCAAGCCCGCCTACTTCGCCGTTCGCGACGCACTCCA
GCAGTTCGTCACGCCCACCGCTGCCCCCGGCGTGGCCAGCCTCTCCAACACGGGCCGAAAGTCCGGGCTGAGCGACGGTG
ATTACGACATCAAGATGAACCTCACCAAGGGCGCGCCGGGCAGCTACTACCGCCTCTACGAGAACGATGTCCTCGTGTCC
TCGCAGCGCCTCGACTCCCTCGCGACCCCGCGGCAGTCGGCGACTACGTCCTTCTCCGGGAAGGCGGAGGGGAAGTACAG
GTACCGCGCGGAGCTCATCAACTCACAGGGCGTCACGTCGACGAAGACCACCACGGTGCTGGTGAAGCACCTCGCACCCA
GCAGACCGGTGGTCTCGGTCGACAACAGGGACGGAGACGGCACCTTCGTCGCCACGGCGACGCTGAAGTCAGGGATCAAC
GCCACCTCCTACGCCTTCAAGCTGGACGGCCGGATCGTCGGGACGGGGCCCCTGACGGCTGCGACGCCCAACAAGCAGAC
TGCGAAGGTGTCCCTCACCGGAATCGCCGCTGGTCGGCACGCTCTCACCGCCGTTTTCACCAATACGAAGGGATCCACCG
AGTCGAGGTCGGTCACCGTCAGGGTGCGCTAG
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| Protein sequence : | |
MRTLTSAALATTVALGLTLIAAVPARASTGDGPTLRELAEPAGLTIGSGSIKAAEWTKDDRPSNYLTDPRFADTLAEQFN
GLSPENEMKWAFTQPEEGVYDFAGLDRLVAFAEEHDMAVKGHGLISSCCDPEYVTSITDAGEMRAAMTEHFTTVMERYDG
RIDRWDVVSEALESQGTTLQSTTFFKVLGPGYIADAFRIARAADPDAKLFINENLVEFDAAKRQAFLDLLTGLVAEGVPV
DGVALQMHETFAGPLPGVITEMVDSYRALGLDVEIAELDVHTYDPVSQATIYGDVVAEALAAGVTEISTWGFTDKHLYTW
LPGAKPLIFDEEYGPKPAYFAVRDALQQFVTPTAAPGVASLSNTGRKSGLSDGDYDIKMNLTKGAPGSYYRLYENDVLVS
SQRLDSLATPRQSATTSFSGKAEGKYRYRAELINSQGVTSTKTTTVLVKHLAPSRPVVSVDNRDGDGTFVATATLKSGIN
ATSYAFKLDGRIVGTGPLTAATPNKQTAKVSLTGIAAGRHALTAVFTNTKGSTESRSVTVRVR
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