PAI Gene Information


Name : ramA (CMM_0105)
Accession : YP_001220844.1
PAI name : chp/tomA region
PAI accession : NC_009480_P1
Strain : Clavibacter michiganensis NCPPB 382
Virulence or Resistance: Not determined
Product : putative alpha-rhamnosidase
Function : -
Note : putative alpha rhamnosidase (ZP_00229021.1| hypothetical protein Krad06000075 [Kineococcus radiotolerans SRS30216]; AAR96046.1| alpha-L-rhamnosidase A [Thermomicrobia bacterium PRI-1686]). , weak similarities to: COG3408, GDB1, Glycogen debranching enzyme
Homologs in the searched genomes :   60 hits    ( 60 protein-level )  
Publication :
    -Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity", J. Bacteriol. 190 (6), 2138-2149 (2008) PUBMED 18192381.

    -Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "Direct Submission", Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.

    -Linke,B., "Direct Submission", Submitted (10-MAY-2007) Linke B., Center For Biotechnology, Bielefeld University, Universitaetsstrasse 25, 33501 Bielefeld, GERMANY.


DNA sequence :
ATGACGGCGCACGACTGGCAAGCGAGATTCGTCGGCAGTAGCACCCCGTCGAGCGCCGGCGATCCGGCACTCTACGTGCG
TCACACCTTCTCCCTCCGTGACGACGTCCTCAACGCGACACTGCATGTCACAGCCCTCGGCATCGTCGAACCGTCGTTGA
ATGGGGCGAAAGTCGGCAACGAACTCCTCGCGCCCGGGTGGACTTCGTACCGGCACCGTCTCGGAGTCAGCAGCTACGAC
GTCACATCCTCCCTCCAGCCGGGAGAGAACGTCCTCGGAGCCGTCGTGGGGGAGGGCTGGGCCGCTGGCCTGTTGAGCTA
CGAAGGCATCCGCCACAACTACATCGACCGCCCTGCCGTCTTCCTCCAGCTCGAGGTCGAGTACGCCGACCGCACTGAGA
CGATCGTCAGCGGCGAAGCCTCCCGCTGCTCCACCGGCGCCGTCAAGGCCCACGGCCTCTACGAGGGCGAGGAGTACGAC
GCCCGACTCGAGCCGACCGGCTGGGACCAGCCAGGGTTCGATGACGGTGCGTGGCAATCGGCCGTCGTGATCGAGTGGGA
TCTCGCGACCCTGCGAGCGGACATCGCGCCCCCCATTCGAGCCATGGAGGAGATCGAACCGGTCGCGATCACGACGACGC
CAGCTGGGCGCACGGTCGTCGACTTCGGAGTGAACCTCGTGGGCTGGGTGCGGATCCGGGTCTCGGGAGATCGCGGTGCA
ACTGTGGTCCTTCGACATGCGGAGACGCTCACGCCCGGTGGCGAGCCAGAGTACGAGTCGAACCGAGGCGCGGCAGCTAC
GGACCGCTACACAATGCGCGGGGGAGAGGTCCCCGAGACGTGGGAGCCCAGGTTCACCTTCCATGGCTTCCGCTACGTGG
ACGTCGAAGGCTGGCCCGGCACGCTGTCGGCGGAGGACATCCGCGCCATCGTCGTTCACAGCGACATGGCCCGATCGGGA
TGGTTCGAGACGTCCAACGACCTCGTCACGAAGTTCCACGGCAATGTCGTGCGCTCGATGCGCGGTAACTTCGTCGGCGT
TCCGACCGACTGTCCTCAGCGCGACGAGCGAATGGGATGGACAGGTGACCTCAACGCGTTCGCGCCGTCGGCTGCCTTCC
TCTACGACGTCCGAGGGGTGCTCCGATCCTGGCTCGAAGACCTCGCCGCCGAGCAGACCGAGAAGGGCTTCGTGCCCTGG
GTCGTGCCTGACATCCTGACCCACCCGTCCGCGCCCACTGCACTCTGGAGCGATGTGGCCATCAGCCTTCCGTGGGTTCT
GTACAACGAGTACGGAGACCTCGAGATCCTTCGGCGCAGCTACCCGTCGATGGTCGCCTTCATGACGCAGGTCGAACCGC
TTCTCGATGAGGATGGCCTATGGAGCAAGGGGTACCAGTTCGGCGACTGGCTCGATCCGGACGCACCTCCGGAGAACGCC
GCGGCGGGTAAGACGGACAAGCACCTCGTCGCGTCCGCGTACCTATGCAAGACCACACGAGAACTTGCCGCTACCGCTGG
TCTTTTAGGAGAGGAGGACGACGCCGCGCATTTCTCAGCGTTGGCCGAGCGTGTCCGGGCGGCGTTCCGCCATCAGTACG
TCACCCCGGCAGGACGAGTGACCAATGAATCATCCACCGCATACGCTCTCGCCATCGTGTTCGAGATCCTGCAAGGCGAG
CAGCGTCGAAAAGCCGGCGACCGGCTCGCTGAGCTCGTAGCGCAATCTGGCTACCGGATCTCGACGGGGTTCGCAGGAAC
ACCGCACGTGGCCGATGCGCTCACCAGTACGGGTCACGTGCAGGAGGCGTACCTGCTCCTACTCGAAGAAGGTTGCCCCT
CCTTCCTCTACCCGGTGACCATGGGTGCGACGACCATCTGGGAGCGATGGGACTCCGTCCTCCCTGATGGCACCCTCAAC
TCCACCGGCATGACGTCGCTCAACCACTATGCCCTCGGCTCGGTCGCCGACTGGCTCCATCGCGTCGTGGGCGGGCTCGA
GAGGATCGAGCCCGGCTGGCAGCGGATCAAGATCGCTCCCATCCCTGGTGGGAACCTCACGTCGGCACGTGTCGCACACG
ACACCGTGCTCGGCCGTGCCGAAGTGGGGTGGCAGCTGGAGAGCGGCCACATGGAGCTCAACGTCGTCATTCCCGAAGGA
GCAACGGCGACAGTCGTTCTGCCTTTGCACCCCGACAACCTCGTCGAGGAGGTTGGGCCGGGCGGTCACTCGTGGCGTTA
CGCGACGACGCAGGACGCACGCCGCACATACGGACTGGATACTCCACTCGCGGTGCTTGTCGAGAACCGGCGAGCTTGGC
AAGAGGTACTCAAGGTCTTTGCCACTCATCTCCCCGGCATCTCCATCGACAGCAATGTCCCGGAGGCCGCAGCGATGACG
CTCGACATGATCATGGTTCACCTCCCCGTCCAACTGATGACGGCAGGACCGGAGGCGCTGAGACGTGACCTCGAAGCGAC
GCTTGAGCGCTTGAGCAACTGA

Protein sequence :
MTAHDWQARFVGSSTPSSAGDPALYVRHTFSLRDDVLNATLHVTALGIVEPSLNGAKVGNELLAPGWTSYRHRLGVSSYD
VTSSLQPGENVLGAVVGEGWAAGLLSYEGIRHNYIDRPAVFLQLEVEYADRTETIVSGEASRCSTGAVKAHGLYEGEEYD
ARLEPTGWDQPGFDDGAWQSAVVIEWDLATLRADIAPPIRAMEEIEPVAITTTPAGRTVVDFGVNLVGWVRIRVSGDRGA
TVVLRHAETLTPGGEPEYESNRGAAATDRYTMRGGEVPETWEPRFTFHGFRYVDVEGWPGTLSAEDIRAIVVHSDMARSG
WFETSNDLVTKFHGNVVRSMRGNFVGVPTDCPQRDERMGWTGDLNAFAPSAAFLYDVRGVLRSWLEDLAAEQTEKGFVPW
VVPDILTHPSAPTALWSDVAISLPWVLYNEYGDLEILRRSYPSMVAFMTQVEPLLDEDGLWSKGYQFGDWLDPDAPPENA
AAGKTDKHLVASAYLCKTTRELAATAGLLGEEDDAAHFSALAERVRAAFRHQYVTPAGRVTNESSTAYALAIVFEILQGE
QRRKAGDRLAELVAQSGYRISTGFAGTPHVADALTSTGHVQEAYLLLLEEGCPSFLYPVTMGATTIWERWDSVLPDGTLN
STGMTSLNHYALGSVADWLHRVVGGLERIEPGWQRIKIAPIPGGNLTSARVAHDTVLGRAEVGWQLESGHMELNVVIPEG
ATATVVLPLHPDNLVEEVGPGGHSWRYATTQDARRTYGLDTPLAVLVENRRAWQEVLKVFATHLPGISIDSNVPEAAAMT
LDMIMVHLPVQLMTAGPEALRRDLEATLERLSN