Name : pdpC1 (FTT_1354)
Accession : YP_170306.1
PAI name : FPI
PAI accession : NC_006570_P1
Strain : Francisella tularensis F92
Virulence or Resistance: Not determined
Product : hypothetical protein
Function : -
Note : Similar to AAP58966.1 PdpC from Francisella novicida (1218 aa). BLAST Score = 2172, Expect = 0.0 Identities = 1089/1220 (89), Positives = 1120/1220 (91),Gaps = 3/1220 (0) Identical to FTT1709. It is part of the duplicated region 1374371..1408281 which is
Homologs in the searched genomes : 27 hits ( 27 protein-level )
Publication :
-Duffield,M.L., "Direct Submission", Submitted (20-MAY-2009) Duffield M.L., Biomedical Sciences, Defence Science and Technology Lab, Porton Down, Wiltshire, SP4 0JQ, UNITED KINGDOM.
-Duffield,M.L., "Direct Submission", Submitted (25-JUN-2004) Duffield M.L., Biomedical Sciences, Defence Science and Technology Lab, Porton Down, Wiltshire, SP4 0JQ, UNITED KINGDOM REMARK revised by [3].
-Larsson,P., Oyston,P.C., Chain,P., Chu,M.C., Duffield,M., Fuxelius,H.H., Garcia,E., Halltorp,G., Johansson,D., Isherwood,K.E., Karp,P.D., Larsson,E., Liu,Y., Michell,S., Prior,J., Prior,R., Malfatti,S., Sjostedt,A., Svensson,K., Thompson,N., Vergez,L., Wa, "The complete genome sequence of Francisella tularensis, the causative agent of tularemia", Nat. Genet. 37 (2), 153-159 (2005) PUBMED 15640799.
-Larsson,P., Oyston,P.C., Chain,P., Chu,M.C., Duffield,M., Fuxelius,H.H., Garcia,E., Halltorp,G., Johansson,D., Isherwood,K.E., Karp,P.D., Larsson,E., Liu,Y., Michell,S., Prior,J., Prior,R., Malfatti,S., Sjostedt,A., Svensson,K., Thompson,N., Vergez,L., Wa, "Direct Submission", Submitted (13-AUG-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
| DNA sequence : |  |
ATGAACGACAAATATGAACTAAATATCTATTTTGAGAAAATAGAGTTACCTAAAACAGCAGATTTCAATATGATAAGTAA
GCATGATATTAAAGAACTCAGAGTAGATGCTAATTTAAAAAAGAAAATACACTTATTACAATTTGATGAAGATTATTTAG
CATGTATGAGGAGATTAAGAGCTATTCATCCCTCAAAAATAGCGATGCAAAAAATTAAATCAATTCGCAATAAAAAAAAT
TCTTTTATAATTGCCATTTTATCTTTAGATAAAATAATTCACAAAACTAAATTTATCACTTTTGGACATAAAACCGTTAT
TTTTGATTTTAAGAAACTATGGGGATTAGTTGATTTCGTAATAGTTCATACAAGTAATAAAACCTGGGTTAATCATAAGT
TAACATCATTTATGCCATCAATTACATACTGTAATCAAAACATCATCCATTTAGCATACCATTCTGATTTTTTATATATT
TATCATACTCCAGAATTTATGGATGATATAAATGTAGATCGAGAAAATAGAAGAGAGTTAGTGGCAAAAATTCCCGATCC
ATATTGGGTAAGAGCTGATACTAAAGAAAATAAAATCAATATTACTTCTGAAAAGAAAAATCTAGAAAAAGATTTAAAAA
AAATAACTAAATTAAAAAATTTTGAAATAAGCGCAAATGATATTTTTTTCTCAAAAGCTATAAAAGCAGCTCCAAGATTA
CAACATAAAAATAAGAGTAAATTATTTAATTCATTAGCGATTGAAAATAATGAAAAAATCAAACGCGACATAATTGATTA
TGCAATATCTAATGCTTGGTATAAAAACGAGGGGTTACTTGAAAATCTAATGACATTTTTAGACGCGCTAGTCGTAAGAC
ATCTCTACTTAATAGCAGTTTACTCAGTTTATGAAATAGAAATAGGTATTAAATCAGTAAAACCTGAGTATAGCAAATTA
TTAAAATCTGGCCTATTGAACAAAGATATTCAAAATCAATTGATATATGATCAAAAGAAAATTAGCAATATTATTTGGCT
TGGTGAAACATTTCATGGTTTAGATATTGAAGAAGCTCAGGCTTTATGTGAGTTTCTTGATGAAGAGAATATTAACCCGA
AAATTAATCCTATAAATTCTAAAAAGCTATATAAAACCTACAAAGAAAATTATAAAAGCGATTCAGAAAAAATTTTAAGT
TTCACAAAATACAAAGAGAAATATAATTTTTTAAATAATGATAAGCTTAGAGAAGAACATGCAAATAAACTTTCAAGCAT
ATTAGAAGATCCAAAATTTAGAGTTCTTAGCTATATAAATGCATTTTTATGTTCAACTAAAAATTATCTAGTACCTTATG
GGTATTTAGGAAGTAATCCTCTTACATACTATAATTGTATGCTAGAAACCGGAAAACGTAGAACATCAAAAGAAGCATAT
TTTGCTGATATAAGAAACAAATTGTTTATAGTATGCTATCTTCCTGGCTTCTTGAGCTCTGTAATTGCTGATGATGACTT
TATAGACTGGTATTCTAATAAGAAAGAAAATCAAGAATTACTCAAAAACTCTTATTTGAACAATTTATATAATTCAAAGC
AGAAATATATAAAAGATTTTATCGATCTTGATATTATTAAACTTCTAAAACAGACATCATCTCAAATCAAGCCAAGCTAT
ATACCAGTAGCTTTTAGATATGGTGCATTTGCCTCAACAACTGCTTTGATAAGATCAAATGCAAATGTTTCTAATCGAAT
GGAGTTTGAATTATATGACTCACCTGAAAGACTACATAATCAATACTCAGAAAAAGAGGAAATGATTATGCCAAAATCGG
TTAATAACCCCAAGGATCACTCAATTGACAATGGAATGTCTTTATTTAGCCTTAATCTAACAAATGAAAAAGAAGATGGA
CTTCGAAAAGTTATGTTGAAAGTTGCACAACTATATAATCTTGATTTCAAGGTAGGTATCTCAGGAAATTTAGATCAAGC
AATGACTCAGGCATTAATACTCGGGATGGCAACTACAAAAAAAAATGGAGATATCGTAATTGATGAAGATCAAGTGCTAT
ATATGACATACTTATACTGCATTTTCATGGCACATAGTGTCGATCATACTGTAGATGAAATACTAATGTCCTCAAATACT
TATATGTTAAACTCTAAAGAGGAAAAGTATCCTATAGCCAATATAGCTAATTTTTTTGCTAGACCTGTATTTAAACTTTC
TAAGGATAAAGAGTTTAAAGCATTAGTTGAAAAGTATGAAAATAGCATAAAACCTAATTCAAAAGTTCTCAAAGAAAATT
ATATAAGTAGAGTAACGACGTTATCCGAGGTATATGAAGATATATATAATTTAAATTGCTTATATAGTTCTCTATCAGAA
GGATCCTTGTATAACCTATTATCAACTCATAGTGAAAGAAACTGTACTTTATTAGAGCAGTATTCTCGTAAGAAGAAAGC
GGAGACAGGATTGGTCCAAGATGGAGAGAAAATAAAAGTCGTAAACAACTACAATAGCTATGCTGCGATTAATCAATATC
AACATTTTGTATCACTAGGCATAATGTATGATAGTGGTGCAAAATACTCCTATTCTCATAAAAAACAGATAGAAAAAGAT
TTCAACTTATACTCACCAGATAAAGAACAGATAAATTATCTAAAATATAACTTTAAAGATAATAAATTTGATGCTGTTTA
TAAAAACAAAAAGAGCAAAGAAAAAACTCAAAGCCATATTGTGTATGCAAAAAAACAAAATACGCGATATTGCTACGGAT
ATTTTAACGATTTTTTCGTTAAAAATAGAATTACGACTTTTTATAAAATAAAAGATAAATCAGGAAACTATTTAGTAAAC
TTACATAATGAAAAATATAGTTTCGCAACACCTAATTCAGATTCTAAAATATATAGAGTTTCACCAGAATTACTTAACAA
TAGAGATGATTTTAAAAGAGTATCTAAAGATATTATAAAATCATATAAATATATTAGTTTTGATAAACAAAAGGAAGATA
TAGTTAAAAATTTTGGTAAAAACTTATATCATACTAATTATGAGATATGGGTCGGACTATCACATCAAGCTATATCATGT
TTTTCAGTTTTAGATAACATAGATACACAAGAAGCTGCTAATGCTTTTATCGATGCTTTATATTATATTAGATTAATGCA
ATTATATTATGGCAAAACTATACCTTTTTTGTGGATTAGTAGCGAAATTGTAAGATATTCTTCATCAGAAACTCACTACT
ATATACCAACAGAAGAAAACTTTGAAAATATACTTAAAATTGCTCTTAATAGAGCCTCAAAACCAGTAATAGAAAGATTC
TTAATTATTCTTAACATATATAATAACACTATTGATGATAATACTTTAATTTTAATACGATGCCGTTTAACAATAATATT
ATTTGAACATGAAGAGCAGAAACTCAAATTAAAAGCTTTACAAAAATATGCTGACGCTTATAAAAAAAATAATTATAAAA
ACGAAATTAATTTTAGAGCTTGGTTTGAATCTATATTTCATGTTCAAAACTTATCCTTATCTCCTAATTATATTGGCAAT
AATATTTTAATCTTGAGTTTAGTTGAAGAATTAAAACCAAAATGTAGTGAATATAAAAAAAACATGATTAACCAACAAAT
TATAGCTAAAGCAAACGAGTTAAACTTTTATCAACTTCTAATAAGACTTATTGAAATATCAACCTATCATAGAATACTTA
CGAAATCAATCATAACTAATACAACCTCGTTACTTTATGACATATTAAATAAACCAGAATTTCAAACAATAAATAAATTA
ATAAATAAGCTATTTATTTATAAAAACAAGGATCTAAATACTGATAAATATAAAGCCTTTCACACTAAGCTTATAACTAT
TGAAAAAACCTATAAGAAAATAAATAGCTTATATAAATCAGACTTTTTTAAAAAAATATCATCATAG
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| Protein sequence : | |
MNDKYELNIYFEKIELPKTADFNMISKHDIKELRVDANLKKKIHLLQFDEDYLACMRRLRAIHPSKIAMQKIKSIRNKKN
SFIIAILSLDKIIHKTKFITFGHKTVIFDFKKLWGLVDFVIVHTSNKTWVNHKLTSFMPSITYCNQNIIHLAYHSDFLYI
YHTPEFMDDINVDRENRRELVAKIPDPYWVRADTKENKINITSEKKNLEKDLKKITKLKNFEISANDIFFSKAIKAAPRL
QHKNKSKLFNSLAIENNEKIKRDIIDYAISNAWYKNEGLLENLMTFLDALVVRHLYLIAVYSVYEIEIGIKSVKPEYSKL
LKSGLLNKDIQNQLIYDQKKISNIIWLGETFHGLDIEEAQALCEFLDEENINPKINPINSKKLYKTYKENYKSDSEKILS
FTKYKEKYNFLNNDKLREEHANKLSSILEDPKFRVLSYINAFLCSTKNYLVPYGYLGSNPLTYYNCMLETGKRRTSKEAY
FADIRNKLFIVCYLPGFLSSVIADDDFIDWYSNKKENQELLKNSYLNNLYNSKQKYIKDFIDLDIIKLLKQTSSQIKPSY
IPVAFRYGAFASTTALIRSNANVSNRMEFELYDSPERLHNQYSEKEEMIMPKSVNNPKDHSIDNGMSLFSLNLTNEKEDG
LRKVMLKVAQLYNLDFKVGISGNLDQAMTQALILGMATTKKNGDIVIDEDQVLYMTYLYCIFMAHSVDHTVDEILMSSNT
YMLNSKEEKYPIANIANFFARPVFKLSKDKEFKALVEKYENSIKPNSKVLKENYISRVTTLSEVYEDIYNLNCLYSSLSE
GSLYNLLSTHSERNCTLLEQYSRKKKAETGLVQDGEKIKVVNNYNSYAAINQYQHFVSLGIMYDSGAKYSYSHKKQIEKD
FNLYSPDKEQINYLKYNFKDNKFDAVYKNKKSKEKTQSHIVYAKKQNTRYCYGYFNDFFVKNRITTFYKIKDKSGNYLVN
LHNEKYSFATPNSDSKIYRVSPELLNNRDDFKRVSKDIIKSYKYISFDKQKEDIVKNFGKNLYHTNYEIWVGLSHQAISC
FSVLDNIDTQEAANAFIDALYYIRLMQLYYGKTIPFLWISSEIVRYSSSETHYYIPTEENFENILKIALNRASKPVIERF
LIILNIYNNTIDDNTLILIRCRLTIILFEHEEQKLKLKALQKYADAYKKNNYKNEINFRAWFESIFHVQNLSLSPNYIGN
NILILSLVEELKPKCSEYKKNMINQQIIAKANELNFYQLLIRLIEISTYHRILTKSIITNTTSLLYDILNKPEFQTINKL
INKLFIYKNKDLNTDKYKAFHTKLITIEKTYKKINSLYKSDFFKKISS
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