Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of papA gene of AF081285

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) papA
( YP_006108764.1 )

major pilin subunit PapA

NC_017631
(Escherichia coli ABU 83972)

2e-40

2) papA
( YP_006141782.1 )

PapA protein

NC_017644
(Escherichia coli NA114)

5e-38

3) papA
( YP_002414017.1 )

P-fimbriae major subunit

NC_011751
(Escherichia coli UMN026)

2e-37

4) papA2
( YP_006146816.1 )

major pilin protein PapA

NC_017646
(Escherichia coli CE10)

2e-33

5) papA
( YP_002392884.1 )

major pilin protein PapA

NC_011742
(Escherichia coli S88)

1e-30

6) UM146_21685
( YP_006113177.1 )

major pilin protein PapA

NC_017632
(Escherichia coli UM146)

5e-31

7) papA
( YP_543829.1 )

major pilin subunit PapA

NC_007946
(Escherichia coli UTI89)

5e-31

8) papA
( YP_854256.1 )

major fibrial protein

NC_008563
(Escherichia coli APEC O1)

7e-31

9) ECP_2972
( YP_670856.1 )

PixA protein

NC_008253
(Escherichia coli 536)

7e-20

10) ETAC_10690
( YP_007629619.1 )

P pilus assembly protein, pilin FimA

NC_020796
(Edwardsiella tarda C07-087)

1e-17

11) fimA
( YP_005699638.1 )

P pilus assembly protein, pilin FimA

NC_017309
(Edwardsiella tarda FL6-60)

2e-17

12) ETAE_2255
( YP_003296301.1 )

P pilus assembly protein, pilin FimA

NC_013508
(Edwardsiella tarda EIB202)

2e-17

• Sequence Alignments

1) papA in NC_017631


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score =  158 bits (583),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 108/138 (79%), Positives = 125/138 (91%), Gaps = 1/138 (0%)

Query  1    MIKSVIAGAVAMAVVSFGVNAAPTIPQGQGEVTFKGTVVDAPCGIETQSARQEIDFGQIS  60
            MIKSVIAGAVAMAVVSFG  AAPTIPQGQG VTF+GTVVDAPCGI++QSA Q IDFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  60

Query  61   KSFLQEGGESQPKDLNIKLVNCDITNFkkapvgggatkagtvaLTFSGVSSGNNKDMLQT  120
            K FL+++GESQPK ++IKL+NCDITNF K + GGG++K+GTV+LTFSGV+SG + DMLQT
Sbjct  61   KLFLENDGESQPKSFDIKLINCDITNF-KKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQT  119

Query  121  VGATNTAIVVVDPHGKRV  138
            VGATNTAIVV DPHGKRV
Sbjct  120  VGATNTAIVVTDPHGKRV  137

2) papA in NC_017644


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score =  150 bits (552),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 104/140 (75%), Positives = 124/140 (89%), Gaps = 3/140 (2%)

Query  8    MIKSVIAGAVAMAVVSFGANAADTVAPSQGSGQVNFKGTVIDAPCGIETQSANQTIDFGQ  67
            MIKSVIAGAVAMAVVSFGA AA T++  QG G+V F+GTV+DAPCGI++QSA+Q+IDFGQ
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIP--QGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQ  58

Query  68   ISKLFLENGGTTQPKDLDIKLVNCDITNFkkaatpggaaktgtVSLTFAGVPAGNASDML  127
            +SKLFLEN+G +QPK +DIKL+NCDITNF K A+ GG+AKTGTVSLTF+GVP+G  SDML
Sbjct  59   VSKLFLENDGESQPKSFDIKLINCDITNF-KKAAGGGGAKTGTVSLTFSGVPSGPQSDML  117

Query  128  KTVGETNTAIVVLNPHGSRV  147
            +TVG TNTAIVV +PHG RV
Sbjct  118  QTVGATNTAIVVTDPHGKRV  137

3) papA in NC_011751


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score =  148 bits (545),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 105/137 (77%), Positives = 118/137 (87%), Gaps = 10/137 (7%)

Query  1    MIKSVIAGAAAMAVVSFGANAAP---QGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  57
            MIKSVIAGA AMAVVSFGA AAP   QGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  60

Query  58   KVLLNNGGTSTPKSFDIKLTDCDITNY-----KAGNKAGTVSLTFSGVQAG--TDMLQTV  110
            K++L+N+G S PKSFDIKL +CDITN+      +G K+GTVSLTFSGV +G  +DMLQTV
Sbjct  61   KLFLENDGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTV  120

Query  111  GSTNTAILITDPHGKAV  127
            G+TNTAI++TDPHGK V
Sbjct  121  GATNTAIVVTDPHGKRV  137

4) papA2 in NC_017646


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score =  134 bits (493),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 92/137 (68%), Positives = 112/137 (82%), Gaps = 1/137 (0%)

Query  8    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVTAPCGISQKSADQSIDFGQLS  67
            MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVV APCGI  +SADQSIDFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  60

Query  68   KSFLAAGGVSKPMNLDIELVNCDITSFKGVGGNQAAKKGTVNLAFTGPIVANHKEELDTS  127
            K FL  +G S+P ++DI L+NCDIT+FK  +G  +AK GTV+L+F+G   + + + L+T 
Sbjct  61   KLFLENDGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTV  120

Query  128  GGTGTAIVV-QAAGKNV  143
            G+T TAIVV ++ GK V
Sbjct  121  GATNTAIVVTDPHGKRV  137

5) papA in NC_011742


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 90/137 (66%), Positives = 105/137 (77%), Gaps = 4/137 (2%)

Query  12   MIKSVIAGAVAMAVVSFGVNAAPTIPQGQGKVTFNGTVVDAPCSISQKSADQSIDFGQLS  71
            MIKSVIAGAVAMAVVSFG  AAPTIPQGQGKVTFNGTVVDAPC+I  +SADQSIDFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  60

Query  72   KSFLEAGGTSKPMDLDIELVNCDITAF---KQGQAAKNGKVQLSFTGPQVTGQAEELATN  128
            K FLE +G S+P  +DI L+NCDIT F     G +AK G V L+F+G     Q++ L T 
Sbjct  61   KLFLENDGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTV  120

Query  129  GGTGTAIVV-QAAGKNV  144
            G+T TAIVV ++ GK V
Sbjct  121  GATNTAIVVTDPHGKRV  137

6) UM146_21685 in NC_017632


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score =  126 bits (463),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 89/137 (65%), Positives = 112/137 (82%), Gaps = 1/137 (0%)

Query  1    MIKSVIAGAVAMAVVSFGVNAAPTTPQGQGRVTFNGTVVDAPCSISQKSADQSIDFGQLS  60
            MIKSVIAGAVAMAVVSFG  AAPT PQGQG+VTFNGTVVDAPC+I  +SADQSIDFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  60

Query  61   KSFLQAGGVSKPMNLDIELVNCDITSFkgvggapaakkgtvkLAFSGPRVSGHNEELDTS  120
            K FL+ +G S+P ++DI L+NCDIT+FK  +G+ +AK GTV L+FSG   + +++ L+T 
Sbjct  61   KLFLENDGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTV  120

Query  121  GGTGTAIVV-QAAGKNV  136
            G+T TAIVV ++ GK V
Sbjct  121  GATNTAIVVTDPHGKRV  137

7) papA in NC_007946


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score =  126 bits (463),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 89/137 (65%), Positives = 112/137 (82%), Gaps = 1/137 (0%)

Query  1    MIKSVIAGAVAMAVVSFGVNAAPTTPQGQGRVTFNGTVVDAPCSISQKSADQSIDFGQLS  60
            MIKSVIAGAVAMAVVSFG  AAPT PQGQG+VTFNGTVVDAPC+I  +SADQSIDFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  60

Query  61   KSFLQAGGVSKPMNLDIELVNCDITSFkgvggapaakkgtvkLAFSGPRVSGHNEELDTS  120
            K FL+ +G S+P ++DI L+NCDIT+FK  +G+ +AK GTV L+FSG   + +++ L+T 
Sbjct  61   KLFLENDGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTV  120

Query  121  GGTGTAIVV-QAAGKNV  136
            G+T TAIVV ++ GK V
Sbjct  121  GATNTAIVVTDPHGKRV  137

8) papA in NC_008563


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score =  126 bits (461),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 90/137 (66%), Positives = 105/137 (77%), Gaps = 4/137 (2%)

Query  8    MIKSVIAGAVAMAVVSFGVNAAPTIPQGQGKVTFNGTVVDAPCSISQKSADQSIDFGQLS  67
            MIKSVIAGAVAMAVVSFG  AAPTIPQGQGKVTFNGTVVDAPC+I  +SADQSIDFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  60

Query  68   KSFLEAGGTSKPMDLDIELVNCDITAF---KQGQAAKNGKVQLSFTGPQVTGQAEELATN  124
            K FLE +G S+P  +DI L+NCDIT F     G +AK G V L+F+G     Q++ L T 
Sbjct  61   KLFLENDGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTV  120

Query  125  GGTGTAIVV-QAAGKNV  140
            G+T TAIVV ++ GK V
Sbjct  121  GATNTAIVVTDPHGKRV  137

9) ECP_2972 in NC_008253


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score = 89.9 bits (322),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 65/137 (48%), Positives = 91/137 (67%), Gaps = 12/137 (8%)

Query  1    MLKSTLGIAIAFSLCA----VAHAANQGQGVVNFKGTVIDAPCGIAPESADQTIDFGQIS  56
            M+KS ++ A+A ++ +     A +  QGQG V F+GTV+DAPCGI ++SADQ+IDFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  60

Query  57   KSHLKNDGISVKKDLDIKLVNCDFTD--------PTAKKTVSVTFSGTPVNGHTDELGTA  108
            K  L NDG S  K +DIKL+NCD+T+         +   TVS+TFSG P   ++D L T 
Sbjct  61   KLFLENDGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTV  120

Query  109  GDTGTAVVVSASDGSMV  125
            G T TA+VV+ ++G  V
Sbjct  121  GATNTAIVVTDPHGKRV  137

10) ETAC_10690 in NC_020796


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score = 82.3 bits (293),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 63/131 (49%), Positives = 90/131 (69%), Gaps = 12/131 (9%)

Query  9    AGAMTIALVTFGTQAAS----GQGVVNFSGTVITAPCGISPESADQSIDFGQISKSHLEA  64
            AGA+++A+V+FG+ AA+    GQG V F+GTV+ APCGI ++SADQSIDFGQ+SK  LE 
Sbjct  7    AGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVSKLFLEN  66

Query  65   GGISVKKNLDIKLVGCDATAL--------AQTGSANVTFTGVTITGAPTELGTTGSTGTA  116
            +G S  K++DIKL+ CD T +        A+TG+ ++TF+GV     +  L T G+T TA
Sbjct  67   DGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTVGATNTA  126

Query  117  IVISSEDGSLV  127
            IV++  +G  V
Sbjct  127  IVVTDPHGKRV  137

11) fimA in NC_017309


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score = 81.8 bits (291),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 63/131 (49%), Positives = 89/131 (68%), Gaps = 12/131 (9%)

Query  12   AGAMTIALVTFGSQAAS----GQGVVNFSGTVITAPCGIAPESADQSIDFGQISKSHLEA  67
            AGA+++A+V+FG+ AA+    GQG V F+GTV+ APCGI ++SADQSIDFGQ+SK  LE 
Sbjct  7    AGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVSKLFLEN  66

Query  68   GGISVKKNIDIKLVGCDATAL--------AQTGSAKVTFTGVTITGAPTELGTTGSTGTA  119
            +G S  K++DIKL+ CD T +        A+TG+  +TF+GV     +  L T G+T TA
Sbjct  67   DGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTVGATNTA  126

Query  120  IVISSEDGSLV  130
            IV++  +G  V
Sbjct  127  IVVTDPHGKRV  137

12) ETAE_2255 in NC_013508


> AF081285|1|G1|3661488|AAC61718.1|Escherichia_coli_CFT073|-|1..410|papA|-|PapA
Length=137

 Score = 81.5 bits (290),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 63/131 (49%), Positives = 89/131 (68%), Gaps = 12/131 (9%)

Query  9    AGAMTIALVTFGSQAAS----GQGVVNFSGTVITAPCGIAPESADQSIDFGQISKSHLEA  64
            AGA+++A+V+FG+ AA+    GQG V F+GTV+ APCGI ++SADQSIDFGQ+SK  LE 
Sbjct  7    AGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVSKLFLEN  66

Query  65   GGISVKKNIDIKLVGCDATAL--------AQTGSAKVTFTGVTITGAPTELGTTGSTGTA  116
            +G S  K++DIKL+ CD T +        A+TG+  +TF+GV     +  L T G+T TA
Sbjct  67   DGESQPKSFDIKLINCDITNFKKAAGGGGAKTGTVSLTFSGVPSGPQSDMLQTVGATNTA  126

Query  117  IVISSEDGSLV  127
            IV++  +G  V
Sbjct  127  IVVTDPHGKRV  137