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Homologs of secD gene of AY597278

553

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) secD
( YP_234319.1 )

preprotein translocase subunit SecD

NC_007005
(Pseudomonas syringae B728a)

0.0

2) secD
( NP_791241.1 )

protein-export membrane protein SecD

NC_004578
(Pseudomonas syringae DC3000)

0.0

3) secD
( YP_273560.1 )

preprotein translocase subunit SecD

NC_005773
(Pseudomonas syringae 1448A)

0.0

4) secD
( YP_006325798.1 )

protein-export membrane protein SecD

NC_017911
(Pseudomonas fluorescens A506)

0.0

5) secD
( YP_002874578.1 )

preprotein translocase subunit SecD

NC_012660
(Pseudomonas fluorescens SBW25)

0.0

6) secD
( YP_008002210.1 )

protein-export membrane protein SecD

NC_021237
(Pseudomonas fluorescens CHA0)

0.0

7) secD
( YP_262052.1 )

preprotein translocase subunit SecD

NC_004129
(Pseudomonas protegens Pf-5)

0.0

8) secD
( YP_007027932.1 )

preprotein translocase subunit SecD

NC_019670
(Pseudomonas sp. UW4)

0.0

9) secD
( YP_007398808.1 )

preprotein translocase subunit SecD

NC_020209
(Pseudomonas poae RE*1-1-14)

0.0

10) PSEBR_a918
( YP_004352091.1 )

Sec protein secretion system subunit SecD

NC_015379
(Pseudomonas brassicacearum NFM421)

0.0

11) secD
( YP_005206429.1 )

protein SecD

NC_016830
(Pseudomonas fluorescens F113)

0.0

12) secD
( YP_789311.1 )

preprotein translocase subunit SecD

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

0.0

13) secD
( YP_350347.1 )

preprotein translocase subunit SecD

NC_007492
(Pseudomonas fluorescens Pf0-1)

0.0

14) secD
( YP_007707969.1 )

preprotein translocase subunit SecD

NC_020912
(Pseudomonas aeruginosa B136-33)

0.0

15) secD
( YP_006481039.1 )

preprotein translocase subunit SecD

NC_018080
(Pseudomonas aeruginosa DK2)

0.0

16) secD
( YP_002438759.1 )

preprotein translocase subunit SecD

NC_011770
(Pseudomonas aeruginosa LESB58)

0.0

17) secD
( YP_005973706.1 )

preprotein translocase subunit SecD

NC_017548
(Pseudomonas aeruginosa M18)

0.0

18) secD
( YP_005983216.1 )

preprotein translocase subunit

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

0.0

19) secD
( NP_252510.1 )

preprotein translocase subunit SecD

NC_002516
(Pseudomonas aeruginosa PAO1)

0.0

20) secD
( YP_008134447.1 )

preprotein translocase subunit SecD

NC_021577
(Pseudomonas aeruginosa RP73)

0.0

21) secD
( YP_606720.1 )

preprotein translocase subunit SecD

NC_008027
(Pseudomonas entomophila L48)

0.0

22) secD
( YP_001751192.1 )

preprotein translocase subunit SecD

NC_010501
(Pseudomonas putida W619)

0.0

23) secD
( YP_001346676.1 )

preprotein translocase subunit SecD

NC_009656
(Pseudomonas aeruginosa PA7)

0.0

24) secD
( NP_742996.1 )

preprotein translocase subunit SecD

NC_002947
(Pseudomonas putida KT2440)

0.0

25) secD
( YP_005928775.1 )

protein SecD

NC_017530
(Pseudomonas putida BIRD-1)

0.0

26) secD
( YP_006534782.1 )

Protein-export membrane protein secD

NC_018220
(Pseudomonas putida DOT-T1E)

0.0

27) secD
( YP_001266211.1 )

preprotein translocase subunit SecD

NC_009512
(Pseudomonas putida F1)

0.0

28) secD
( YP_008115477.1 )

preprotein translocase subunit SecD

NC_021505
(Pseudomonas putida NBRC 14164)

0.0

29) YSA_06758
( YP_006387524.1 )

preprotein translocase subunit SecD

NC_017986
(Pseudomonas putida ND6)

0.0

30) PPS_0901
( YP_004700360.1 )

preprotein translocase subunit SecD

NC_015733
(Pseudomonas putida S16)

0.0

31) secD
( YP_007659201.1 )

preprotein translocase subunit SecD

NC_020829
(Pseudomonas denitrificans ATCC 13867)

0.0

32) secD
( YP_001667124.1 )

preprotein translocase subunit SecD

NC_010322
(Pseudomonas putida GB-1)

0.0

33) secD
( YP_008092673.1 )

preprotein translocase subunit SecD

NC_021491
(Pseudomonas putida H8234)

0.0

34) secD
( YP_007227793.1 )

preprotein translocase subunit SecD

NC_019905
(Pseudomonas putida PC9)

0.0

35) secD
( YP_004715466.1 )

preprotein translocase subunit SecD

NC_015740
(Pseudomonas stutzeri ATCC 17588)

0.0

36) secD
( YP_005939823.1 )

preprotein translocase subunit SecD

NC_017532
(Pseudomonas stutzeri DSM 4166)

0.0

37) Psefu_3310
( YP_004475366.1 )

protein-export membrane protein SecD

NC_015556
(Pseudomonas fulva 12-X)

0.0

38) secD
( YP_006524982.1 )

preprotein translocase subunit SecD

NC_018177
(Pseudomonas stutzeri DSM 10701)

0.0

39) MDS_3783
( YP_004381566.1 )

preprotein translocase subunit SecD

NC_015410
(Pseudomonas mendocina NK-01)

0.0

40) secD
( YP_001188998.1 )

preprotein translocase subunit SecD

NC_009439
(Pseudomonas mendocina ymp)

0.0

41) secD
( YP_006456749.1 )

preprotein translocase subunit SecD

NC_018028
(Pseudomonas stutzeri CCUG 29243)

0.0

42) Psest_1244
( YP_007239437.1 )

SecD/SecF family protein-export membrane protein

NC_019936
(Pseudomonas stutzeri RCH2)

0.0

43) secD
( YP_007894964.1 )

preprotein translocase subunit SecD

NC_021149
(Azotobacter vinelandii CA)

0.0

44) secD
( YP_007900013.1 )

preprotein translocase subunit SecD

NC_021150
(Azotobacter vinelandii CA6)

0.0

45) secD
( YP_002801157.1 )

preprotein translocase subunit SecD

NC_012560
(Azotobacter vinelandii DJ)

0.0

46) secD
( YP_008101464.1 )

preprotein translocase subunit SecD

NC_021499
(Pseudomonas resinovorans NBRC 106553)

0.0

47) secD
( YP_001173532.1 )

preprotein translocase subunit SecD

NC_009434
(Pseudomonas stutzeri A1501)

0.0

48) Marme_1553
( YP_004312654.1 )

protein-export membrane protein SecD

NC_015276
(Marinomonas mediterranea MMB-1)

2e-166

49) secD
( YP_574880.1 )

preprotein translocase subunit SecD

NC_007963
(Chromohalobacter salexigens DSM 3043)

3e-162

50) HP15_1481
( YP_005885173.1 )

preprotein translocase subunit SecD

NC_017506
(Marinobacter adhaerens HP15)

7e-161

51) secD
( YP_006558017.1 )

protein translocase subunit SecD

NC_018268
(Marinobacter sp. BSs20148)

1e-160

52) secD
( YP_003896468.1 )

preprotein translocase subunit SecD

NC_014532
(Halomonas elongata DSM 2581)

4e-159

53) secD
( YP_435596.1 )

preprotein translocase subunit SecD

NC_007645
(Hahella chejuensis KCTC 2396)

6e-159

54) secD
( YP_958395.1 )

preprotein translocase subunit SecD

NC_008740
(Marinobacter aquaeolei VT8)

1e-157

55) secD
( YP_005430063.1 )

preprotein translocase subunit SecY

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

8e-158

56) secD
( YP_001341493.1 )

preprotein translocase subunit SecD

NC_009654
(Marinomonas sp. MWYL1)

1e-150

57) M5M_04785
( YP_006915894.1 )

protein-export membrane protein SecD

NC_018868
(Simiduia agarivorans SA1)

4e-150

58) Mar181_1425
( YP_004481387.1 )

protein-export membrane protein SecD

NC_015559
(Marinomonas posidonica IVIA-Po-181)

5e-149

59) TOL_1313
( YP_007681977.1 )

protein-export membrane protein SecD

NC_020888
(Thalassolituus oleivorans MIL-1)

5e-147

60) ABK1_3219
( YP_005515791.1 )

secD

NC_017162
(Acinetobacter baumannii 1656-2)

4e-144

61) secD
( YP_002320723.1 )

preprotein translocase subunit SecD

NC_011586
(Acinetobacter baumannii AB0057)

4e-144

62) secD
( YP_002324473.1 )

preprotein translocase subunit SecD

NC_011595
(Acinetobacter baumannii AB307-0294)

4e-144

63) secD
( YP_001847825.1 )

preprotein translocase subunit SecD

NC_010611
(Acinetobacter baumannii ACICU)

4e-144

64) secD
( YP_001085921.2 )

preprotein translocase subunit SecD

NC_009085
(Acinetobacter baumannii ATCC 17978)

4e-144

65) secD
( YP_001712497.1 )

preprotein translocase subunit SecD

NC_010410
(Acinetobacter baumannii AYE)

4e-144

66) BJAB07104_03255
( YP_008210718.1 )

Preprotein translocase subunit SecD

NC_021726
(Acinetobacter baumannii BJAB07104)

4e-144

67) BJAB0715_03316
( YP_008218464.1 )

Preprotein translocase subunit SecD

NC_021733
(Acinetobacter baumannii BJAB0715)

4e-144

68) BJAB0868_03210
( YP_008214534.1 )

Preprotein translocase subunit SecD

NC_021729
(Acinetobacter baumannii BJAB0868)

4e-144

69) secD
( YP_007597401.1 )

preprotein translocase subunit SecD

NC_020547
(Acinetobacter baumannii D1279779)

4e-144

70) ABTJ_00537
( YP_006288476.1 )

protein-export membrane protein, SecD/SecF family

NC_017847
(Acinetobacter baumannii MDR-TJ)

4e-144

71) ABZJ_03351
( YP_005527307.1 )

preprotein translocase subunit SecD

NC_017171
(Acinetobacter baumannii MDR-ZJ06)

4e-144

72) secD
( YP_001706161.1 )

preprotein translocase subunit SecD

NC_010400
(Acinetobacter baumannii SDF)

4e-144

73) secD
( YP_005800258.1 )

preprotein translocase subunit SecD

NC_017387
(Acinetobacter baumannii TCDC-AB0715)

4e-144

74) M3Q_3400
( YP_006849716.1 )

SecD/SecF family protein-export membrane protein

NC_018706
(Acinetobacter baumannii TYTH-1)

4e-144

75) secD
( YP_045334.1 )

preprotein translocase subunit SecD

NC_005966
(Acinetobacter sp. ADP1)

5e-144

76) secD
( YP_003627166.1 )

protein translocase subunit SecD

NC_014147
(Moraxella catarrhalis RH4)

2e-143

77) secD
( YP_004996643.1 )

preprotein translocase subunit SecD

NC_016603
(Acinetobacter calcoaceticus PHEA-2)

3e-143

78) secD
( YP_003730806.1 )

preprotein translocase subunit SecD

NC_014259
(Acinetobacter oleivorans DR1)

8e-143

79) secD
( YP_580373.1 )

preprotein translocase subunit SecD

NC_007969
(Psychrobacter cryohalolentis K5)

3e-141

80) secD
( YP_001279841.1 )

preprotein translocase subunit SecD

NC_009524
(Psychrobacter sp. PRwf-1)

1e-139

81) secD
( YP_001981945.1 )

protein-export membrane protein SecD

NC_010995
(Cellvibrio japonicus Ueda107)

6e-138

82) secD
( YP_003074065.1 )

protein-export membrane protein SecD

NC_012997
(Teredinibacter turnerae T7901)

3e-137

83) secD
( YP_264561.1 )

preprotein translocase subunit SecD

NC_007204
(Psychrobacter arcticus 273-4)

1e-134

84) secD
( YP_008163029.1 )

preprotein translocase subunit SecD

NC_021661
(Psychrobacter sp. G)

4e-134

85) secD
( YP_006822282.1 )

preprotein translocase subunit SecD

NC_018691
(Alcanivorax dieselolei B5)

2e-131

86) B565_2390
( YP_004393042.1 )

protein-export membrane protein SecD

NC_015424
(Aeromonas veronii B565)

2e-129

87) secD-1
( YP_856273.1 )

protein-export membrane protein SecD

NC_008570
(Aeromonas hydrophila ATCC 7966)

3e-129

88) AHML_09590
( YP_008043047.1 )

protein-export membrane protein SecD

NC_021290
(Aeromonas hydrophila ML09-119)

3e-129

89) secD
( YP_001142394.1 )

protein-export membrane protein SecD

NC_009348
(Aeromonas salmonicida A449)

6e-129

90) Fbal_2775
( YP_003914051.1 )

protein-export membrane protein SecD

NC_014541
(Ferrimonas balearica DSM 9799)

1e-128

91) secD
( YP_007628406.1 )

preprotein translocase subunit SecD

NC_020796
(Edwardsiella tarda C07-087)

5e-128

92) secD
( YP_003295017.1 )

preprotein translocase subunit SecD

NC_013508
(Edwardsiella tarda EIB202)

5e-128

93) secD
( YP_005698504.1 )

protein-export membrane protein SecD

NC_017309
(Edwardsiella tarda FL6-60)

5e-128

94) secD
( YP_003930010.1 )

protein-export membrane protein secD

NC_014562
(Pantoea vagans C9-1)

9e-127

95) secD
( YP_003519260.1 )

SecD

NC_013956
(Pantoea ananatis LMG 20103)

3e-126

96) secD
( YP_005196767.1 )

protein-export membrane protein SecD

NC_016816
(Pantoea ananatis LMG 5342)

3e-126

97) secD
( YP_869077.1 )

preprotein translocase subunit SecD

NC_008577
(Shewanella sp. ANA-3)

3e-126

98) secD
( YP_001007345.1 )

preprotein translocase subunit SecD

NC_008800
(Yersinia enterocolitica 8081)

4e-126

99) secD
( YP_737505.1 )

preprotein translocase subunit SecD

NC_008322
(Shewanella sp. MR-7)

4e-126

100) secD
( YP_004950790.1 )

protein-export membrane protein secD

NC_016514
(Enterobacter cloacae EcWSU1)

5e-126

101) secD
( YP_003881911.1 )

secYEG protein translocase auxillary subunit

NC_014500
(Dickeya dadantii 3937)

7e-126

102) secD
( YP_692223.1 )

preprotein translocase subunit SecD

NC_008260
(Alcanivorax borkumensis SK2)

8e-126

103) secD
( YP_004729273.1 )

protein-export membrane protein SecD

NC_015761
(Salmonella bongori NCTC 12419)

1e-125

104) secD
( NP_718673.1 )

preprotein translocase subunit SecD

NC_004347
(Shewanella oneidensis MR-1)

1e-125

105) Sbal175_1566
( YP_006020148.1 )

protein-export membrane protein SecD

NC_017571
(Shewanella baltica BA175)

2e-125

106) Sbal117_2925
( YP_006038111.1 )

protein-export membrane protein SecD

NC_017579
(Shewanella baltica OS117)

2e-125

107) secD
( YP_001051141.1 )

preprotein translocase subunit SecD

NC_009052
(Shewanella baltica OS155)

2e-125

108) secD
( YP_001367002.1 )

preprotein translocase subunit SecD

NC_009665
(Shewanella baltica OS185)

2e-125

109) secD
( YP_001555306.1 )

preprotein translocase subunit SecD

NC_009997
(Shewanella baltica OS195)

2e-125

110) Sbal678_2890
( YP_005274091.1 )

protein-export membrane protein SecD

NC_016901
(Shewanella baltica OS678)

2e-125

111) Sde_1407
( YP_526881.1 )

protein-export membrane protein SecD

NC_007912
(Saccharophagus degradans 2-40)

9e-126

112) secD
( YP_733519.1 )

preprotein translocase subunit SecD

NC_008321
(Shewanella sp. MR-4)

9e-126

113) NT01EI_1041
( YP_002932488.2 )

protein-export membrane protein SecD, putative

NC_012779
(Edwardsiella ictaluri 93-146)

3e-125

114) Sput200_2506
( YP_006010417.1 )

protein-export membrane protein SecD

NC_017566
(Shewanella putrefaciens 200)

3e-125

115) secD
( YP_001184002.1 )

preprotein translocase subunit SecD

NC_009438
(Shewanella putrefaciens CN-32)

3e-125

116) secD
( YP_962918.1 )

preprotein translocase subunit SecD

NC_008750
(Shewanella sp. W3-18-1)

4e-125

117) secD
( YP_002149863.1 )

preprotein translocase subunit SecD

NC_010554
(Proteus mirabilis HI4320)

7e-125

118) secD
( YP_007883121.1 )

protein translocase, subunit SecD

NC_021082
(Mannheimia haemolytica M42548)

9e-125

119) D650_20490
( YP_007666826.1 )

Protein translocase subunit SecD

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

9e-125

120) D648_7150
( YP_007668227.1 )

Protein translocase subunit SecD

NC_020834
(Mannheimia haemolytica USDA-ARS-USMARC-185)

9e-125

121) Pat9b_0913
( YP_004114793.1 )

protein-export membrane protein SecD

NC_014837
(Pantoea sp. At-9b)

2e-124

122) secD
( YP_008123237.1 )

preprotein translocase subunit SecD

NC_021521
(Haemophilus parasuis ZJ0906)

3e-124

123) secD-1
( YP_003556325.1 )

protein-export membrane protein SecD

NC_014012
(Shewanella violacea DSS12)

4e-124

124) secD
( YP_006825620.1 )

preprotein translocase subunit SecD

NC_018692
(Alteromonas macleodii Black Sea 11)

1e-123

125) WQG_15460
( YP_007548614.1 )

Protein translocase subunit SecD

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

1e-123

126) secD
( YP_006799714.1 )

preprotein translocase subunit SecD

NC_018678
(Alteromonas macleodii English Channel 673)

6e-124

127) secD
( YP_719525.1 )

preprotein translocase subunit SecD

NC_008309
(Haemophilus somnus 129PT)

6e-124

128) secD
( NP_874118.1 )

preprotein translocase subunit SecD

NC_002940
(Haemophilus ducreyi 35000HP)

6e-124

129) secD
( YP_088755.1 )

preprotein translocase subunit SecD

NC_006300
(Mannheimia succiniciproducens MBEL55E)

8e-124

130) secD
( YP_001673781.1 )

preprotein translocase subunit SecD

NC_010334
(Shewanella halifaxensis HAW-EB4)

9e-124

131) secD
( YP_006748654.1 )

preprotein translocase subunit SecD

NC_018632
(Alteromonas macleodii ATCC 27126)

1e-123

132) secD
( YP_001783655.1 )

preprotein translocase subunit SecD

NC_010519
(Haemophilus somnus 2336)

1e-123

133) secD
( YP_002357500.1 )

preprotein translocase subunit SecD

NC_011663
(Shewanella baltica OS223)

2e-123

134) secD
( YP_005933167.1 )

protein-export membrane protein SecD

NC_017531
(Pantoea ananatis AJ13355)

2e-123

135) PAGR_g3240
( YP_005993952.1 )

protein-export membrane protein SecD

NC_017554
(Pantoea ananatis PA13)

2e-123

136) secD
( YP_928066.1 )

preprotein translocase subunit SecD

NC_008700
(Shewanella amazonensis SB2B)

4e-123

137) secD
( YP_006803639.1 )

preprotein translocase subunit SecD

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

4e-123

138) secD
( YP_003007753.1 )

preprotein translocase subunit SecD

NC_012913
(Aggregatibacter aphrophilus NJ8700)

6e-123

139) secD
( YP_007874919.1 )

preprotein translocase subunit SecD

NC_021066
(Raoultella ornithinolytica B6)

1e-122

140) secD
( YP_001474625.1 )

preprotein translocase subunit SecD

NC_009831
(Shewanella sediminis HAW-EB3)

1e-122

141) secD
( YP_006816675.1 )

preprotein translocase subunit SecD

NC_018690
(Actinobacillus suis H91-0380)

2e-122

142) secD
( NP_668323.1 )

preprotein translocase subunit SecD

NC_004088
(Yersinia pestis KIM)

3e-122

143) secD
( YP_668397.1 )

preprotein translocase subunit SecD

NC_008253
(Escherichia coli 536)

4e-122

144) secD
( YP_006104619.1 )

protein-export membrane protein SecD

NC_017631
(Escherichia coli ABU 83972)

4e-122

145) secD
( YP_851582.1 )

preprotein translocase subunit SecD

NC_008563
(Escherichia coli APEC O1)

4e-122

146) secD
( NP_752452.1 )

preprotein translocase subunit SecD

NC_004431
(Escherichia coli CFT073)

4e-122

147) secD
( YP_006152634.1 )

preprotein translocase subunit SecD

NC_017652
(Escherichia coli clone D i14)

4e-122

148) secD
( YP_006147715.1 )

preprotein translocase subunit SecD

NC_017651
(Escherichia coli clone D i2)

4e-122

149) secD
( YP_006099629.1 )

protein-export membrane protein SecD

NC_017628
(Escherichia coli IHE3034)

4e-122

150) secD
( YP_002555337.1 )

Protein-export membrane protein secD

NC_011993
(Escherichia coli LF82)

4e-122

151) secD
( YP_002390230.1 )

preprotein translocase subunit SecD

NC_011742
(Escherichia coli S88)

4e-122

152) ECSF_0368
( YP_003348358.1 )

preprotein translocase SecD

NC_013654
(Escherichia coli SE15)

4e-122

153) secD
( YP_539462.1 )

preprotein translocase subunit SecD

NC_007946
(Escherichia coli UTI89)

4e-122

154) secD
( YP_003364091.1 )

protein-export protein

NC_013716
(Citrobacter rodentium ICC168)

4e-122

155) secD
( YP_006094771.1 )

protein-export protein

NC_017626
(Escherichia coli 042)

4e-122

156) secD
( YP_003232968.1 )

SecYEG protein translocase auxillary subunit SecD

NC_013364
(Escherichia coli 11128)

4e-122

157) secD
( YP_003227519.1 )

preprotein translocase subunit SecD

NC_013361
(Escherichia coli 11368)

4e-122

158) secD
( YP_003220384.1 )

SecYEG protein translocase auxillary subunit SecD

NC_013353
(Escherichia coli 12009)

4e-122

159) secD
( YP_006771515.1 )

preprotein translocase subunit SecD

NC_018650
(Escherichia coli 2009EL-2050)

4e-122

160) secD
( YP_006785704.1 )

preprotein translocase subunit SecD

NC_018661
(Escherichia coli 2009EL-2071)

4e-122

161) secD
( YP_006780564.1 )

preprotein translocase subunit SecD

NC_018658
(Escherichia coli 2011C-3493)

4e-122

162) secD
( YP_002401536.1 )

preprotein translocase subunit SecD

NC_011748
(Escherichia coli 55989)

4e-122

163) APECO78_05545
( YP_007380288.1 )

preprotein translocase subunit SecD

NC_020163
(Escherichia coli APEC O78)

4e-122

164) secD
( YP_002998217.1 )

secD, subunit of SecD-SecF-YajC-YidC Secretion Complex and Sec Protein Secretion Complex

NC_012892
(Escherichia coli BL21(DE3))

4e-122

165) secD
( YP_003053026.1 )

protein export protein SecD

NC_012971
(Escherichia coli BL21(DE3))

4e-122

166) secD
( YP_003498130.1 )

protein-export membrane protein secD

NC_013941
(Escherichia coli CB9615)

4e-122

167) secD
( YP_001461589.1 )

preprotein translocase subunit SecD

NC_009801
(Escherichia coli E24377A)

4e-122

168) secD
( YP_002269050.1 )

preprotein translocase subunit SecD

NC_011353
(Escherichia coli EC4115)

4e-122

169) secD
( YP_002396483.1 )

preprotein translocase subunit SecD

NC_011745
(Escherichia coli ED1a)

4e-122

170) secD
( NP_286147.1 )

preprotein translocase subunit SecD

NC_002655
(Escherichia coli EDL933)

4e-122

171) ETEC_0461
( YP_006114050.1 )

protein-export protein

NC_017633
(Escherichia coli ETEC H10407)

4e-122

172) secD
( YP_001457246.1 )

preprotein translocase subunit SecD

NC_009800
(Escherichia coli HS)

4e-122

173) secD
( YP_002385884.1 )

preprotein translocase subunit SecD

NC_011741
(Escherichia coli IAI1)

4e-122

174) secD
( YP_002406316.1 )

preprotein translocase subunit SecD

NC_011750
(Escherichia coli IAI39)

4e-122

175) secD
( YP_001729314.1 )

preprotein translocase subunit SecD

NC_010473
(Escherichia coli K-12)

4e-122

176) secD
( YP_002925492.1 )

preprotein translocase subunit SecD

NC_012759
(Escherichia coli K-12)

4e-122

177) secD
( YP_007556008.1 )

SecYEG protein translocase auxillary subunit

NC_020518
(Escherichia coli K-12)

4e-122

178) secD
( YP_488700.1 )

SecYEG protein translocase auxillary subunit

NC_007779
(Escherichia coli K-12)

4e-122

179) secD
( NP_414942.1 )

SecYEG protein translocase auxillary subunit

NC_000913
(Escherichia coli K12)

4e-122

180) secD
( YP_008563616.1 )

preprotein translocase subunit SecD

NC_022364
(Escherichia coli LY180)

4e-122

181) secD
( YP_003043582.1 )

preprotein translocase subunit SecD

NC_012967
(Escherichia coli REL606)

4e-122

182) secD
( YP_006157675.1 )

preprotein translocase subunit SecD

NC_017656
(Escherichia coli RM12579)

4e-122

183) secD
( NP_308486.1 )

preprotein translocase subunit SecD

NC_002695
(Escherichia coli Sakai)

4e-122

184) secD
( YP_002291704.1 )

preprotein translocase subunit SecD

NC_011415
(Escherichia coli SE11)

4e-122

185) secD
( YP_001742543.1 )

preprotein translocase subunit SecD

NC_010498
(Escherichia coli SMS-3-5)

4e-122

186) secD
( YP_003076426.1 )

preprotein translocase subunit SecD

NC_013008
(Escherichia coli TW14359)

4e-122

187) secD
( YP_002411209.1 )

preprotein translocase subunit SecD

NC_011751
(Escherichia coli UMN026)

4e-122

188) secD
( YP_006311303.1 )

preprotein translocase subunit SecD

NC_017906
(Escherichia coli Xuzhou21)

4e-122

189) secD
( YP_001879115.1 )

preprotein translocase subunit SecD

NC_010658
(Shigella boydii CDC 3083-94)

4e-122

190) secD
( YP_406843.1 )

preprotein translocase subunit SecD

NC_007613
(Shigella boydii Sb227)

4e-122

191) secD
( YP_402034.1 )

preprotein translocase subunit SecD

NC_007606
(Shigella dysenteriae Sd197)

4e-122

192) secD
( YP_005726017.1 )

Protein-export membrane protein secD

NC_017328
(Shigella flexneri 2002017)

4e-122

193) secD
( NP_836074.1 )

preprotein translocase subunit SecD

NC_004741
(Shigella flexneri 2457T)

4e-122

194) secD
( NP_706296.1 )

preprotein translocase subunit SecD

NC_004337
(Shigella flexneri 301)

4e-122

195) secD
( YP_687950.2 )

preprotein translocase subunit SecD

NC_008258
(Shigella flexneri 8401)

4e-122

196) secD
( YP_005454993.1 )

preprotein translocase subunit SecD

NC_016822
(Shigella sonnei 53G)

4e-122

197) secD
( YP_309396.1 )

preprotein translocase subunit SecD

NC_007384
(Shigella sonnei Ss046)

4e-122

198) secD
( YP_004466114.1 )

preprotein translocase subunit SecD

NC_015554
(Alteromonas sp. SN2)

4e-122

199) secD
( YP_005403186.1 )

preprotein translocase subunit SecD

NC_017047
(Rahnella aquatilis HX2)

6e-122

200) secD
( YP_005625234.1 )

SecYEG protein translocase auxillary subunit

NC_017265
(Yersinia pestis Harbin 35)

8e-122

201) secD
( YP_646830.1 )

preprotein translocase subunit SecD

NC_008149
(Yersinia pestis Nepal516)

8e-122

202) secD
( YP_069471.1 )

preprotein translocase subunit SecD

NC_006155
(Yersinia pseudotuberculosis IP 32953)

8e-122

203) secD
( YP_001094460.1 )

preprotein translocase subunit SecD

NC_009092
(Shewanella loihica PV-4)

8e-122

204) secD
( YP_002327920.1 )

preprotein translocase subunit SecD

NC_011601
(Escherichia coli E2348/69)

1e-121

205) Ping_2212
( YP_943552.1 )

protein-export membrane protein SecD

NC_008709
(Psychromonas ingrahamii 37)

1e-121

206) secD
( NP_992130.1 )

preprotein translocase subunit SecD

NC_005810
(Yersinia pestis 91001)

8e-122

207) secD
( YP_005521670.1 )

preprotein translocase subunit SecD

NC_017168
(Yersinia pestis A1122)

8e-122

208) secD
( YP_001607725.1 )

preprotein translocase subunit SecD

NC_010159
(Yersinia pestis Angola)

8e-122

209) secD
( YP_652591.1 )

preprotein translocase subunit SecD

NC_008150
(Yersinia pestis Antiqua)

8e-122

210) secD
( YP_002348094.1 )

preprotein translocase subunit SecD

NC_003143
(Yersinia pestis CO92)

8e-122

211) secD
( YP_001164159.1 )

preprotein translocase subunit SecD

NC_009381
(Yersinia pestis Pestoides F)

8e-122

212) secD
( YP_001402081.1 )

preprotein translocase subunit SecD

NC_009708
(Yersinia pseudotuberculosis IP 31758)

8e-122

213) secD
( YP_001760137.1 )

preprotein translocase subunit SecD

NC_010506
(Shewanella woodyi ATCC 51908)

8e-122

214) APP7_1125
( YP_001968919.1 )

preprotein translocase subunit SecD

NC_010939
(Actinobacillus pleuropneumoniae AP76)

9e-122

215) secD
( YP_001053764.2 )

preprotein translocase subunit SecD

NC_009053
(Actinobacillus pleuropneumoniae L20)

9e-122

216) A3UG_04955
( YP_006476434.1 )

protein-export membrane protein secD

NC_018079
(Enterobacter cloacae SDM)

2e-121

217) PCNPT3_05195
( YP_007639819.1 )

protein-export membrane protein SecD

NC_020802
(Psychromonas sp. CNPT3)

2e-121

218) secD
( YP_004871142.1 )

preprotein translocase subunit SecD

NC_016041
(Glaciecola nitratireducens FR1064)

2e-121

219) secD
( YP_006577510.1 )

preprotein translocase subunit SecD

NC_018405
(Enterobacter cloacae ENHKU01)

4e-121

220) secD
( YP_006320495.1 )

protein-export membrane protein SecD

NC_017910
(Escherichia blattae DSM 4481)

5e-121

221) secD
( YP_002383723.1 )

preprotein translocase subunit SecD

NC_011740
(Escherichia fergusonii ATCC 35469)

6e-121

222) Tola_2028
( YP_002893213.1 )

protein-export membrane protein SecD

NC_012691
(Tolumonas auensis DSM 9187)

1e-120

223) Ser39006_1681
( YP_008522063.1 )

SecD export membrane protein

NC_022268
(Serratia sp. ATCC 39006)

1e-120

224) secD
( YP_008309746.1 )

preprotein translocase subunit SecD

NC_021844
(Salmonella enterica CFSAN000189)

2e-120

225) secD
( YP_001589373.1 )

preprotein translocase subunit SecD

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-120

226) secD
( YP_002039649.1 )

preprotein translocase subunit SecD

NC_011080
(Salmonella enterica SL254)

2e-120

227) secD
( YP_002145390.1 )

preprotein translocase subunit SecD

NC_011149
(Salmonella enterica SL483)

2e-120

228) secD
( YP_001175612.1 )

preprotein translocase subunit SecD

NC_009436
(Enterobacter sp. 638)

3e-120

229) UMN179_00450
( YP_004419383.1 )

preprotein translocase subunit SecD

NC_015460
(Gallibacterium anatis UMN179)

3e-120

230) Rahaq2_3460
( YP_005201399.1 )

protein-export membrane protein, SecD/SecF family

NC_016818
(Rahnella aquatilis CIP 78.65)

4e-120

231) Rahaq_3382
( YP_004214103.1 )

protein-export membrane protein SecD

NC_015061
(Rahnella sp. Y9602)

5e-120

232) secD
( YP_008264659.1 )

preprotein translocase subunit SecD

NC_021820
(Salmonella enterica 08-1736)

6e-120

233) secD
( YP_005236098.1 )

preprotein translocase subunit SecD

NC_016856
(Salmonella enterica 14028S)

6e-120

234) secD
( YP_002225520.1 )

preprotein translocase subunit SecD

NC_011274
(Salmonella enterica 287/91)

6e-120

235) secD
( YP_008246358.1 )

preprotein translocase subunit SecD

NC_021810
(Salmonella enterica 41578)

6e-120

236) secD
( YP_005395905.1 )

protein-export membrane protein SecD

NC_017046
(Salmonella enterica 798)

6e-120

237) secD
( YP_002142996.2 )

preprotein translocase subunit SecD

NC_011147
(Salmonella enterica AKU12601)

6e-120

238) secD
( YP_008256352.1 )

preprotein translocase subunit SecD

NC_021814
(Salmonella enterica CFSAN001921)

6e-120

239) secD
( YP_007471576.1 )

preprotein translocase subunit SecD

NC_020307
(Salmonella enterica CFSAN001992)

6e-120

240) secD
( YP_008259660.1 )

preprotein translocase subunit SecD

NC_021818
(Salmonella enterica CFSAN002050)

6e-120

241) secD
( YP_008250199.1 )

preprotein translocase subunit SecD

NC_021812
(Salmonella enterica CFSAN002069)

6e-120

242) STY0445
( NP_455002.1 )

protein-export membrane protein SecD

NC_003198
(Salmonella enterica CT18)

6e-120

243) secD
( YP_002214361.1 )

preprotein translocase subunit SecD

NC_011205
(Salmonella enterica CT_02021853)

6e-120

244) secD
( YP_002113440.1 )

preprotein translocase subunit SecD

NC_011094
(Salmonella enterica CVM19633)

6e-120

245) STMMW_04771
( YP_005231543.1 )

protein-export membrane protein SecD

NC_016854
(Salmonella enterica D23580)

6e-120

246) secD
( YP_002242540.1 )

preprotein translocase subunit SecD

NC_011294
(Salmonella enterica P125109)

6e-120

247) secD
( YP_008381765.1 )

preprotein translocase subunit SecD

NC_021984
(Salmonella enterica S06004)

6e-120

248) secD
( YP_215436.1 )

preprotein translocase subunit SecD

NC_006905
(Salmonella enterica SC-B67)

6e-120

249) secD
( YP_005180328.1 )

protein-export membrane protein SecD

NC_016810
(Salmonella enterica SL1344)

6e-120

250) secD
( YP_002044441.1 )

preprotein translocase subunit SecD

NC_011083
(Salmonella enterica SL476)

6e-120

251) secD
( YP_005241354.1 )

preprotein translocase subunit SecD

NC_016857
(Salmonella enterica ST4/74)

6e-120

252) secD
( NP_806186.1 )

preprotein translocase subunit SecD

NC_004631
(Salmonella enterica Ty2)

6e-120

253) secD
( YP_005250972.1 )

preprotein translocase subunit SecD

NC_016863
(Salmonella enterica UK-1)

6e-120

254) Metme_3939
( YP_004514792.1 )

protein-export membrane protein SecD

NC_015572
(Methylomonas methanica MC09)

7e-120

255) secD
( YP_008221057.1 )

preprotein translocase subunit SecD

NC_021738
(Mannheimia haemolytica D171)

7e-120

256) PAU_03488
( YP_003042318.1 )

Protein-export membrane protein secD

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

8e-120

257) secD
( YP_002240125.1 )

preprotein translocase subunit SecD

NC_011283
(Klebsiella pneumoniae 342)

1e-119

258) N559_4050
( YP_008426958.1 )

preprotein translocase subunit SecD

NC_022082
(Klebsiella pneumoniae JM45)

1e-119

259) secD
( YP_005953325.1 )

preprotein translocase subunit SecD

NC_017540
(Klebsiella pneumoniae KCTC 2242)

1e-119

260) secD
( YP_007993336.1 )

hypothetical protein

NC_021232
(Klebsiella pneumoniae SB3432)

1e-119

261) Thimo_1062
( YP_007243496.1 )

SecD/SecF family protein-export membrane protein

NC_019940
(Thioflavicoccus mobilis 8321)

1e-119

262) secD
( YP_454328.1 )

preprotein translocase subunit SecD

NC_007712
(Sodalis glossinidius morsitans)

2e-119

263) secD
( YP_002988501.1 )

preprotein translocase subunit SecD

NC_012880
(Dickeya dadantii Ech703)

9e-120

264) secD
( YP_001908459.1 )

preprotein translocase subunit SecD

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-119

265) secD
( NP_459402.1 )

preprotein translocase subunit SecD

NC_003197
(Salmonella enterica LT2)

2e-119

266) secD
( YP_007903566.1 )

preprotein translocase subunit SecD

NC_021151
(Salmonella enterica U288)

2e-119

267) secD
( YP_008235140.1 )

preprotein translocase subunit SecD

NC_021743
(Mannheimia haemolytica D153)

2e-119

268) secD
( YP_008223676.1 )

preprotein translocase subunit SecD

NC_021739
(Mannheimia haemolytica D174)

2e-119

269) secD
( YP_008338219.1 )

preprotein translocase subunit SecD

NC_021883
(Mannheimia haemolytica USMARC_2286)

2e-119

270) secD
( YP_002918078.1 )

preprotein translocase subunit SecD

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

3e-119

271) secD
( YP_003209349.1 )

preprotein translocase subunit SecD

NC_013282
(Cronobacter turicensis z3032)

3e-119

272) secD
( YP_562412.1 )

preprotein translocase subunit SecD

NC_007954
(Shewanella denitrificans OS217)

3e-119

273) swp_1679
( YP_002311040.1 )

SecD/SecF/SecDF export membrane protein:SecD export membrane protein

NC_011566
(Shewanella piezotolerans WP3)

3e-119

274) secD
( YP_004592694.1 )

preprotein translocase subunit SecD

NC_015663
(Enterobacter aerogenes KCTC 2190)

4e-119

275) secD
( YP_001652083.1 )

preprotein translocase subunit SecD

NC_010278
(Actinobacillus pleuropneumoniae JL03)

4e-119

276) Dd586_1005
( YP_003332595.1 )

protein-export membrane protein SecD

NC_013592
(Dickeya dadantii Ech586)

5e-119

277) secD
( YP_007441622.1 )

preprotein translocase subunit SecD

NC_020260
(Cronobacter sakazakii Sp291)

8e-119

278) Entas_0908
( YP_004827441.1 )

protein-export membrane protein SecD

NC_015968
(Enterobacter asburiae LF7a)

1e-118

279) secD
( YP_001726174.1 )

preprotein translocase subunit SecD

NC_010468
(Escherichia coli ATCC 8739)

1e-118

280) secD
( YP_006142498.1 )

SecYEG protein translocase auxillary subunit

NC_017646
(Escherichia coli CE10)

1e-118

281) EcDH1_3201
( YP_006093116.1 )

protein-export membrane protein SecD

NC_017625
(Escherichia coli DH1)

1e-118

282) secD
( YP_006127794.1 )

hypothetical protein

NC_017638
(Escherichia coli DH1)

1e-118

283) secD
( YP_003037438.1 )

preprotein translocase subunit SecD

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

1e-118

284) EKO11_3441
( YP_005279081.1 )

protein-export membrane protein SecD

NC_016902
(Escherichia coli KO11FL)

1e-118

285) secD
( YP_006166626.1 )

preprotein translocase subunit SecD

NC_017660
(Escherichia coli KO11FL)

1e-118

286) secD
( YP_006167472.1 )

Protein-export membrane protein secD

NC_017663
(Escherichia coli P12b)

1e-118

287) secD
( YP_006132268.1 )

protein-export membrane protein SecD

NC_017641
(Escherichia coli UMNK88)

1e-118

288) secD
( YP_006123254.1 )

SecYEG protein translocase auxillary subunit

NC_017635
(Escherichia coli W)

1e-118

289) secD
( YP_006171928.1 )

preprotein translocase subunit SecD

NC_017664
(Escherichia coli W)

1e-118

290) secD
( YP_002475540.1 )

preprotein translocase subunit SecD

NC_011852
(Haemophilus parasuis SH0165)

1e-118

291) secD
( YP_006137481.1 )

PreProtein translocase subunit SecD

NC_017644
(Escherichia coli NA114)

8e-119

292) secD
( YP_006118746.1 )

preprotein translocase subunit SecD

NC_017634
(Escherichia coli NRG 857C)

8e-119

293) secD
( YP_008570327.1 )

hypothetical protein

NC_022370
(Escherichia coli PMV-1)

8e-119

294) secD
( YP_006111939.1 )

preprotein translocase subunit SecD

NC_017632
(Escherichia coli UM146)

8e-119

295) secD
( YP_008137111.1 )

protein translocase subunit SecD

NC_021591
(Serratia odorifera 4Rx13)

8e-119

296) W5S_3286
( YP_006284232.1 )

Protein-export membrane protein SecD

NC_017845
(Pectobacterium sp. SCC3193)

9e-119

297) secD
( YP_003260638.1 )

preprotein translocase subunit SecD

NC_013421
(Pectobacterium wasabiae WPP163)

9e-119

298) secD
( YP_006215942.1 )

preprotein translocase subunit SecD

NC_017731
(Providencia stuartii MRSN 2154)

1e-118

299) secD
( YP_001501332.1 )

preprotein translocase subunit SecD

NC_009901
(Shewanella pealeana ATCC 700345)

1e-118

300) secD
( YP_001344352.1 )

preprotein translocase subunit SecD

NC_009655
(Actinobacillus succinogenes 130Z)

1e-118

301) GU3_06510
( YP_005091808.1 )

preprotein translocase subunit SecD

NC_016745
(Oceanimonas sp. GK1)

2e-118

302) A464_368
( YP_008320964.1 )

Protein-export membrane protein SecD

NC_021870
(Salmonella bongori N268-08)

2e-118

303) secD
( YP_049228.1 )

preprotein translocase subunit SecD

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-118

304) secD
( NP_931103.1 )

preprotein translocase subunit SecD

NC_005126
(Photorhabdus luminescens TTO1)

2e-118

305) secD
( YP_008396814.1 )

preprotein translocase subunit SecD

NC_022000
(Proteus mirabilis BB2000)

2e-118

306) ST548_p5582
( YP_007389016.1 )

Protein-export membrane protein SecD (TC 3.A.5.1.1)

NC_020181
(Enterobacter aerogenes EA1509E)

3e-118

307) Thicy_0987
( YP_004537233.1 )

protein-export membrane protein SecD

NC_015581
(Thioalkalimicrobium cyclicum ALM1)

3e-118

308) secD
( YP_751379.1 )

preprotein translocase subunit SecD

NC_008345
(Shewanella frigidimarina NCIMB 400)

3e-118

309) ENC_23520
( YP_007845986.1 )

protein-export membrane protein SecD

NC_021046
(Enterobacter cloacae NCTC 9394)

4e-118

310) secD
( YP_001571519.1 )

preprotein translocase subunit SecD

NC_010067
(Salmonella enterica RSK2980)

4e-118

311) HICON_12340
( YP_004138377.1 )

protein-export membrane protein SecD

NC_014922
(Haemophilus influenzae F3047)

5e-118

312) secD
( YP_008035659.1 )

preprotein translocase subunit SecD

NC_021286
(Idiomarina loihiensis GSL 199)

6e-118

313) secD
( YP_156529.1 )

preprotein translocase subunit SecD

NC_006512
(Idiomarina loihiensis L2TR)

6e-118

314) Kvar_4022
( YP_003440933.1 )

protein-export membrane protein SecD

NC_013850
(Klebsiella variicola At-22)

1e-117

315) secD
( YP_001454295.1 )

preprotein translocase subunit SecD

NC_009792
(Citrobacter koseri ATCC BAA-895)

6e-118

316) secD
( YP_003611675.1 )

preprotein translocase subunit SecD

NC_014121
(Enterobacter cloacae ATCC 13047)

6e-118

317) SN31241_14070
( YP_008359324.1 )

Protein translocase subunit SecD

NC_021902
(Salmonella enterica USMARC-S3124.1)

7e-118

318) secD
( YP_006977624.1 )

preprotein translocase subunit SecD

NC_019393
(Alteromonas macleodii AltDE1)

7e-118

319) secD
( YP_004427723.2 )

preprotein translocase subunit SecD

NC_011138
(Alteromonas macleodii Deep ecotype)

7e-118

320) secD
( YP_008172660.1 )

preprotein translocase subunit SecD

NC_021710
(Alteromonas macleodii Ionian Sea U4)

7e-118

321) secD
( YP_008197076.1 )

preprotein translocase subunit SecD

NC_021717
(Alteromonas macleodii Ionian Sea U7)

7e-118

322) secD
( YP_008176763.1 )

preprotein translocase subunit SecD

NC_021712
(Alteromonas macleodii Ionian Sea U8)

7e-118

323) secD
( YP_008184656.1 )

preprotein translocase subunit SecD

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

7e-118

324) secD
( YP_008180683.1 )

preprotein translocase subunit SecD

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

7e-118

325) secD
( YP_008193324.1 )

preprotein translocase subunit SecD

NC_021716
(Alteromonas macleodii English Channel 615)

8e-118

326) Tbd_2079
( YP_315837.1 )

preprotein translocase SecD

NC_007404
(Thiobacillus denitrificans ATCC 25259)

8e-118

327) secD
( YP_007404834.1 )

preprotein translocase subunit SecD

NC_020211
(Serratia marcescens WW4)

9e-118

328) secD
( YP_006837805.1 )

preprotein translocase subunit SecD

NC_018697
(Cycloclasticus sp. P1; MCCC 1A01040)

9e-118

329) KPHS_10990
( YP_005225399.1 )

preprotein translocase subunit SecD

NC_016845
(Klebsiella pneumoniae HS11286)

1e-117

330) secD
( YP_001334041.1 )

preprotein translocase subunit SecD

NC_009648
(Klebsiella pneumoniae subsp. pneumoniae MGH 78578)

1e-117

331) secD
( YP_001477295.1 )

preprotein translocase subunit SecD

NC_009832
(Serratia proteamaculans 568)

1e-117

332) secD
( YP_005803628.1 )

protein-export membrane protein secD

NC_017390
(Erwinia pyrifoliae DSM 12163)

1e-117

333) SBOV03601
( YP_008504245.1 )

protein-export membrane protein SecD

NC_022241
(Salmonella enterica 3114)

2e-117

334) secD
( YP_151513.3 )

protein-export membrane protein SecD

NC_006511
(Salmonella enterica ATCC 9150)

2e-117

335) SU5_01099
( YP_006086740.1 )

protein-export membrane protein SecD

NC_017623
(Salmonella enterica B182)

2e-117

336) secD
( YP_008482153.1 )

protein-export membrane protein SecD

NC_022221
(Salmonella enterica CDC1983-67)

2e-117

337) STBHUCCB_25980
( YP_005218114.1 )

Protein-export membrane protein secD

NC_016832
(Salmonella enterica P-stx-12)

2e-117

338) secD
( YP_002636042.1 )

preprotein translocase subunit SecD

NC_012125
(Salmonella enterica RKS4594)

2e-117

339) secD
( YP_005213695.1 )

protein-export membrane protein SecD

NC_016831
(Salmonella enterica RKS5078)

2e-117

340) secD
( YP_007926753.1 )

preprotein translocase subunit SecD

NC_021176
(Salmonella enterica Ty21a)

2e-117

341) secD
( YP_005818649.1 )

preprotein translocase subunit SecD

NC_017445
(Erwinia sp. Ejp617)

2e-117

342) secD
( YP_008109838.1 )

preprotein translocase subunit SecD

NC_021500
(Enterobacter sp. R4-368)

3e-117

343) secD
( YP_002649642.1 )

preprotein translocase subunit SecD

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-117

344) secD
( YP_247960.1 )

preprotein translocase subunit SecD

NC_007146
(Haemophilus influenzae 86-028NP)

3e-117

345) HIBPF01820
( YP_004134768.1 )

protein-export membrane protein secd

NC_014920
(Haemophilus influenzae F3031)

3e-117

346) secD
( YP_005828871.1 )

General secretory pathway component SecD

NC_017452
(Haemophilus influenzae R2846)

3e-117

347) secD
( YP_001292132.1 )

preprotein translocase subunit SecD

NC_009567
(Haemophilus influenzae PittGG)

4e-117

348) secD
( NP_438410.1 )

preprotein translocase subunit SecD

NC_000907
(Haemophilus influenzae Rd KW20)

4e-117

349) secD
( YP_008543196.1 )

SecD

NC_022356
(Haemophilus influenzae KR494)

5e-117

350) secD
( YP_005827058.1 )

General secretory pathway component SecD

NC_017451
(Haemophilus influenzae R2866)

5e-117

351) PC1_1021
( YP_003016606.1 )

protein-export membrane protein SecD

NC_012917
(Pectobacterium carotovorum PC1)

6e-117

352) secD
( YP_005246167.1 )

preprotein translocase subunit SecD

NC_016860
(Salmonella enterica T000240)

6e-117

353) D782_3448
( YP_007341562.1 )

protein-export membrane protein, SecD/SecF family

NC_020063
(Enterobacteriaceae bacterium FGI 57)

7e-117

354) HIB_02950
( YP_005178326.1 )

SecYEG protein translocase auxillary subunit

NC_016809
(Haemophilus influenzae 10810)

9e-117

355) PCC21_010540
( YP_006645710.1 )

protein-export membrane protein SecD

NC_018525
(Pectobacterium carotovorum PCC21)

1e-116

356) Entcl_3406
( YP_003942935.1 )

protein-export membrane protein SecD

NC_014618
(Enterobacter cloacae SCF1)

2e-116

357) Hneap_2184
( YP_003264047.1 )

protein-export membrane protein SecD

NC_013422
(Halothiobacillus neapolitanus c2)

3e-116

358) TK90_1303
( YP_003460547.1 )

protein exporter SecD

NC_013889
(Thioalkalivibrio sp. K90mix)

5e-116

359) secD
( YP_003711054.1 )

preprotein translocase auxillary membrane protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-115

360) A79E_3925
( YP_006637703.1 )

protein-export membrane protein SecD

NC_018522
(Klebsiella pneumoniae 1084)

2e-115

361) SerAS9_0981
( YP_004504393.1 )

protein-export membrane protein SecD

NC_015567
(Serratia plymuthica AS9)

2e-115

362) secD
( YP_008157827.1 )

preprotein translocase subunit SecD

NC_021659
(Serratia plymuthica S13)

2e-115

363) SerAS12_0981
( YP_004499441.1 )

protein-export membrane protein SecD

NC_015566
(Serratia sp. AS12)

2e-115

364) SerAS13_0981
( YP_006023856.1 )

protein-export membrane protein SecD

NC_017573
(Serratia sp. AS13)

2e-115

365) secD
( YP_742057.1 )

preprotein translocase subunit SecD

NC_008340
(Alkalilimnicola ehrlichii MLHE-1)

2e-115

366) C427_4128
( YP_007545581.1 )

protein-export membrane protein SecD

NC_020514
(Glaciecola psychrophila 170)

2e-115

367) secD
( YP_001871409.1 )

preprotein translocase subunit SecD

NC_010634
(Yersinia pseudotuberculosis PB1/+)

4e-115

368) Glaag_3174
( YP_004435376.1 )

protein-export membrane protein SecD

NC_015497
(Glaciecola sp. 4H-3-7+YE-5)

4e-115

369) NT08PM_1100
( YP_006239980.1 )

protein-export membrane protein SecD

NC_017764
(Pasteurella multocida 3480)

5e-115

370) secD
( YP_005363482.1 )

preprotein translocase subunit SecD

NC_017027
(Pasteurella multocida HN06)

5e-115

371) secD
( NP_245164.1 )

preprotein translocase subunit SecD

NC_002663
(Pasteurella multocida Pm70)

5e-115

372) YPD4_2796
( YP_005506006.1 )

protein-export membrane protein SecD

NC_017154
(Yersinia pestis D106004)

5e-115

373) YPD8_2787
( YP_005509853.1 )

protein-export membrane protein SecD

NC_017160
(Yersinia pestis D182038)

5e-115

374) YPZ3_2807
( YP_003568979.1 )

protein-export membrane protein SecD

NC_014029
(Yersinia pestis Z176003)

5e-115

375) secD
( YP_001721984.1 )

preprotein translocase subunit SecD

NC_010465
(Yersinia pseudotuberculosis YPIII)

5e-115

376) secD
( YP_003005396.1 )

preprotein translocase subunit SecD

NC_012912
(Dickeya zeae Ech1591)

1e-114

377) secD
( YP_660810.1 )

preprotein translocase subunit SecD

NC_008228
(Pseudoalteromonas atlantica T6c)

6e-115

378) secD
( YP_003467583.1 )

preprotein translocase auxillary membrane protein

NC_013892
(Xenorhabdus bovienii SS-2004)

8e-115

379) secD
( YP_003256387.1 )

preprotein translocase subunit SecD

NC_013416
(Aggregatibacter actinomycetemcomitans D11S-1)

8e-115

380) Dsui_3325
( YP_005029496.1 )

protein-export membrane protein, SecD/SecF family

NC_016616
(Dechlorosoma suillum PS)

2e-114

381) secD
( YP_005018472.1 )

preprotein translocase subunit SecD

NC_016612
(Klebsiella oxytoca KCTC 1686)

4e-114

382) A225_1236
( YP_006496985.1 )

protein-export membrane protein SecD

NC_018106
(Klebsiella oxytoca E718)

6e-114

383) D7S_00531
( YP_006286198.1 )

protein-export membrane protein SecD

NC_017846
(Aggregatibacter actinomycetemcomitans D7S-1)

8e-114

384) secD
( YP_008228875.1 )

preprotein translocase subunit SecD

NC_021741
(Serratia liquefaciens ATCC 27592)

1e-113

385) CYCME_1162
( YP_008373851.1 )

Preprotein translocase subunit SecD

NC_021917
(Cycloclasticus zancles 7-ME)

1e-113

386) Tcr_1331
( YP_391600.1 )

protein-export membrane protein SecD

NC_007520
(Thiomicrospira crunogena XCL-2)

1e-113

387) Q7A_2355
( YP_006296800.1 )

protein-export membrane protein SecD

NC_017857
(Methylophaga sp. JAM1)

1e-113

388) MEALZ_0496
( YP_004915793.1 )

protein-export membrane protein SecD

NC_016112
(Methylomicrobium alcaliphilum 20Z)

2e-113

389) MU9_3268
( YP_007506685.1 )

Protein-export membrane protein SecD

NC_020418
(Morganella morganii KT)

7e-113

390) Thivi_3127
( YP_006415129.1 )

protein-export membrane protein, SecD/SecF family

NC_018012
(Thiocystis violascens DSM 198)

1e-112

391) D781_0981
( YP_007343498.1 )

protein-export membrane protein, SecD/SecF family

NC_020064
(Serratia marcescens FGI94)

3e-112

392) secD
( YP_002514133.1 )

preprotein translocase subunit SecD

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

4e-112

393) Nhal_2359
( YP_003527834.1 )

protein-export membrane protein SecD

NC_013960
(Nitrosococcus halophilus Nc 4)

4e-112

394) secD
( YP_008046146.1 )

preprotein translocase subunit SecD

NC_021291
(Spiribacter salinus M19-40)

4e-112

395) secD
( YP_003538051.1 )

protein-export membrane protein

NC_013971
(Erwinia amylovora ATCC 49946)

5e-112

396) secD
( YP_003530312.1 )

protein-export membrane protein SecD

NC_013961
(Erwinia amylovora CFBP1430)

5e-112

397) secD
( YP_001438959.1 )

preprotein translocase subunit SecD

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

6e-112

398) secD
( YP_006344060.1 )

preprotein translocase subunit SecD

NC_017933
(Cronobacter sakazakii ES15)

6e-112

399) Q7C_2363
( YP_006294184.1 )

protein-export membrane protein SecD

NC_017856
(Methylophaga sp. JAM7)

9e-112

400) Alvin_1199
( YP_003443170.1 )

protein-export membrane protein SecD

NC_013851
(Allochromatium vinosum DSM 180)

2e-111

401) secD
( YP_127313.1 )

preprotein translocase subunit SecD

NC_006369
(Legionella pneumophila Lens)

4e-111

402) secD
( YP_267865.1 )

preprotein translocase subunit SecD

NC_003910
(Colwellia psychrerythraea 34H)

2e-110

403) PARA_01430
( YP_004821844.1 )

SecYEG protein translocase auxillary subunit

NC_015964
(Haemophilus parainfluenzae T3T1)

6e-110

404) secD
( YP_344338.1 )

preprotein translocase subunit SecD

NC_007484
(Nitrosococcus oceani ATCC 19707)

1e-109

405) secD
( YP_003619315.1 )

protein export protein

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

1e-109

406) lp12_1941
( YP_005186292.1 )

protein export protein SecD

NC_016811
(Legionella pneumophila ATCC 43290)

1e-109

407) secD
( YP_001250779.1 )

preprotein translocase subunit SecD

NC_009494
(Legionella pneumophila Corby)

1e-109

408) secD
( YP_124296.1 )

preprotein translocase subunit SecD

NC_006368
(Legionella pneumophila Paris)

1e-109

409) LPE509_01181
( YP_007567724.1 )

Protein-export membrane protein SecD

NC_020521
(Legionella pneumophila Philadelphia 1)

1e-109

410) secD
( YP_096017.1 )

preprotein translocase subunit SecD

NC_002942
(Legionella pneumophila Philadelphia 1)

1e-109

411) secD
( YP_008063680.1 )

preprotein translocase subunit SecD

NC_021350
(Legionella pneumophila Thunder Bay)

1e-109

412) ANH9381_2187
( YP_004949813.1 )

preprotein translocase subunit SecD

NC_016513
(Aggregatibacter actinomycetemcomitans ANH9381)

5e-109

413) secD
( YP_003740367.1 )

protein-export membrane protein

NC_014306
(Erwinia billingiae Eb661)

1e-108

414) secD
( YP_005176944.1 )

protein-export membrane protein SecD

NC_016808
(Pasteurella multocida 36950)

7e-109

415) Rmag_1006
( YP_904183.1 )

protein-export membrane protein SecD

NC_008610
(Candidatus Ruthia magnifica Cm)

1e-108

416) secD
( YP_001424600.1 )

protein translocase subunit

NC_009727
(Coxiella burnetii Dugway 5J108-111)

2e-108

417) secD
( YP_003376407.1 )

secd export membrane protein

NC_013722
(Xanthomonas albilineans GPE PC73)

3e-108

418) secD
( YP_002305365.1 )

protein translocase subunit

NC_011528
(Coxiella burnetii CbuK_Q154)

3e-108

419) secD
( YP_001597015.1 )

protein-export membrane protein SecD

NC_010117
(Coxiella burnetii RSA 331)

3e-108

420) secD
( YP_201121.1 )

preprotein translocase subunit SecD

NC_006834
(Xanthomonas oryzae KACC10331)

7e-108

421) secD
( YP_451379.1 )

preprotein translocase subunit SecD

NC_007705
(Xanthomonas oryzae MAFF 311018)

7e-108

422) secD
( YP_001003262.1 )

preprotein translocase subunit SecD

NC_008789
(Halorhodospira halophila SL1)

8e-108

423) secD
( YP_004852049.1 )

preprotein translocase subunit SecD

NC_016010
(Xanthomonas axonopodis F1)

8e-108

424) secD
( YP_364424.1 )

preprotein translocase subunit SecD

NC_007508
(Xanthomonas campestris 85-10)

8e-108

425) secD
( YP_002303393.1 )

protein translocase subunit

NC_011527
(Coxiella burnetii CbuG_Q212)

8e-108

426) secD
( YP_001913218.1 )

preprotein translocase subunit SecD

NC_010717
(Xanthomonas oryzae PXO99A)

2e-107

427) secD
( YP_002923006.1 )

preprotein translocase subunit SecD

NC_012751
(Candidatus Hamiltonella defensa T5A)

2e-107

428) secD
( YP_005637654.1 )

protein-export membrane protein SecD

NC_017271
(Xanthomonas campestris 756C)

1e-106

429) secD
( YP_005435294.1 )

preprotein translocase subunit SecD

NC_017075
(Rubrivivax gelatinosus IL144)

1e-106

430) secD
( YP_001903202.1 )

preprotein translocase subunit SecD

NC_010688
(Xanthomonas campestris B100)

8e-107

431) secD
( NP_820141.1 )

protein translocase subunit

NC_002971
(Coxiella burnetii RSA 493)

3e-106

432) Nwat_2196
( YP_003761349.1 )

protein-export membrane protein SecD

NC_014315
(Nitrosococcus watsonii C-113)

4e-106

433) secD
( YP_004929976.1 )

preprotein translocase subunit SecD

NC_016147
(Pseudoxanthomonas spadix BD-a59)

4e-106

434) secD
( NP_642826.1 )

preprotein translocase subunit SecD

NC_003919
(Xanthomonas axonopodis 306)

7e-106

435) secD
( YP_007636956.1 )

preprotein translocase subunit SecD

NC_020800
(Xanthomonas axonopodis Xac29-1)

7e-106

436) secD
( YP_007650175.1 )

Preprotein translocase subunit SecD

NC_020815
(Xanthomonas citri Aw12879)

7e-106

437) Psesu_1869
( YP_004146942.1 )

protein-export membrane protein SecD

NC_014924
(Pseudoxanthomonas suwonensis 11-1)

1e-105

438) Kkor_1070
( YP_003146257.1 )

protein-export membrane protein SecD

NC_013166
(Kangiella koreensis DSM 16069)

2e-105

439) secD [H]
( YP_007217389.1 )

Protein-export membrane protein SecD

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

4e-105

440) secD
( YP_988185.1 )

preprotein translocase subunit SecD

NC_008782
(Acidovorax sp. JS42)

4e-105

441) secD
( YP_006509266.1 )

SecYEG protein translocase auxillary subunit

NC_018140
(Legionella pneumophila HL06041035)

1e-104

442) secD
( YP_004846535.1 )

protein-export membrane protein SecD

NC_016002
(Pseudogulbenkiania sp. NH8B)

6e-105

443) secD
( YP_001219730.1 )

preprotein translocase SecD subunit

NC_009465
(Candidatus Vesicomyosocius okutanii HA)

9e-105

444) secD
( YP_006506022.1 )

SecYEG protein translocase auxillary subunit

NC_018139
(Legionella pneumophila Lorraine)

1e-104

445) secD
( YP_005628280.1 )

protein-export membrane protein SecD

NC_017267
(Xanthomonas oryzae BLS256)

1e-104

446) secD
( YP_413108.1 )

preprotein translocase subunit SecD

NC_007614
(Nitrosospira multiformis ATCC 25196)

1e-104

447) secD
( YP_113194.2 )

preprotein translocase subunit SecD

NC_002977
(Methylococcus capsulatus Bath)

2e-104

448) secD
( YP_002554782.1 )

preprotein translocase subunit SecD

NC_011992
(Acidovorax ebreus TPSY)

3e-104

449) secD
( YP_242823.1 )

preprotein translocase subunit SecD

NC_007086
(Xanthomonas campestris 8004)

3e-103

450) secD
( NP_637730.1 )

preprotein translocase subunit SecD

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-103

451) secD
( YP_002796750.1 )

preprotein translocase subunit SecD

NC_012559
(Laribacter hongkongensis HLHK9)

6e-103

452) Mmol_1937
( YP_003049367.1 )

protein-export membrane protein SecD

NC_012968
(Methylotenera mobilis JLW8)

8e-103

453) secD
( NP_841200.1 )

preprotein translocase subunit SecD

NC_004757
(Nitrosomonas europaea ATCC 19718)

9e-103

454) secD
( YP_001774856.1 )

preprotein translocase subunit SecD

NC_010513
(Xylella fastidiosa M12)

2e-102

455) secD
( NP_778426.1 )

preprotein translocase subunit SecD

NC_004556
(Xylella fastidiosa Temecula1)

2e-102

456) HEAR0306
( YP_001098661.1 )

preprotein translocase subunit SecD

NC_009138
(Herminiimonas arsenicoxydans )

2e-102

457) Mfla_0512
( YP_544623.1 )

protein-export membrane protein SecD

NC_007947
(Methylobacillus flagellatus KT)

2e-102

458) NAL212_1060
( YP_004294138.1 )

protein-export membrane protein SecD

NC_015222
(Nitrosomonas sp. AL212)

3e-102

459) secD
( YP_006000539.1 )

preprotein translocase subunit SecD

NC_017562
(Xylella fastidiosa GB514)

3e-102

460) secD
( YP_001828900.1 )

preprotein translocase subunit SecD

NC_010577
(Xylella fastidiosa M23)

3e-102

461) secD
( YP_747644.1 )

preprotein translocase subunit SecD

NC_008344
(Nitrosomonas eutropha C91)

5e-102

462) secD
( YP_286480.1 )

preprotein translocase subunit SecD

NC_007298
(Dechloromonas aromatica RCB)

3e-101

463) Nit79A3_0478
( YP_004693759.1 )

protein-export membrane protein SecD

NC_015731
(Nitrosomonas sp. Is79A3)

3e-101

464) SCD_n02208
( YP_008547049.1 )

protein-export membrane protein, SecD/SecF family

NC_022357
(Sulfuricella denitrificans skB26)

5e-101

465) secD
( NP_297518.1 )

preprotein translocase subunit SecD

NC_002488
(Xylella fastidiosa 9a5c)

6e-101

466) secD
( YP_585088.3 )

SecYEG protein translocase auxiliary subunit

NC_007973
(Cupriavidus metallidurans CH34)

8e-101

467) Acav_4576
( YP_004237025.1 )

protein-export membrane protein SecD

NC_015138
(Acidovorax avenae ATCC 19860)

8e-101

468) secD
( YP_157794.2 )

preprotein translocase subunit SecD

NC_006513
(Aromatoleum aromaticum EbN1)

1e-100

469) secD
( YP_006028626.1 )

protein-export membrane protein secd

NC_017574
(Ralstonia solanacearum Po82)

2e-100

470) secD
( YP_972953.1 )

preprotein translocase subunit SecD

NC_008752
(Acidovorax citrulli AAC00-1)

2e-100

471) secD
( YP_003744682.1 )

sec/yeg protein translocase auxillary subunit

NC_014307
(Ralstonia solanacearum CFBP2957)

5e-100

472) R2APBS1_1069
( YP_007589459.1 )

protein-export membrane protein, SecD/SecF family

NC_020541
(Rhodanobacter sp. 2APBS1)

2e-99

473) CtCNB1_4738
( YP_003280780.1 )

protein-export membrane protein SecD

NC_013446
(Comamonas testosteroni CNB-1)

3e-99

474) Y11_20851
( YP_006005584.1 )

protein-export membrane protein SecD

NC_017564
(Yersinia enterocolitica Y11)

2e-99

475) YE105_C1099
( YP_004297298.1 )

preprotein translocase subunit SecD

NC_015224
(Yersinia enterocolitica 105.5R(r))

3e-99

476) Alide_4231
( YP_004128820.1 )

protein-export membrane protein secd

NC_014910
(Alicycliphilus denitrificans BC)

3e-99

477) Alide2_4572
( YP_004390391.1 )

protein-export membrane protein SecD

NC_015422
(Alicycliphilus denitrificans K601)

3e-99

478) secD
( YP_003454416.1 )

protein-export membrane protein SecD

NC_013861
(Legionella longbeachae NSW150)

4e-99

479) secD
( YP_001561869.1 )

preprotein translocase subunit SecD

NC_010002
(Delftia acidovorans SPH-1)

7e-99

480) DelCs14_5693
( YP_004491018.1 )

protein-export membrane protein SecD

NC_015563
(Delftia sp. Cs1-4)

8e-99

481) secD
( YP_007822000.1 )

protein-export membrane protein

NC_021033
(Taylorella asinigenitalis 14/45)

1e-98

482) TASI_1340
( YP_004875106.1 )

protein-export membrane protein SecD

NC_016043
(Taylorella asinigenitalis MCE3)

1e-98

483) BurJV3_1660
( YP_004792215.1 )

protein-export membrane protein SecD

NC_015947
(Stenotrophomonas maltophilia JV3)

2e-98

484) NH44784_034061
( YP_008030482.1 )

Protein-export membrane protein SecD (TC 3.A.5.1.1

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

3e-98

485) secD
( YP_003981174.1 )

protein-export membrane protein SecD

NC_014640
(Achromobacter xylosoxidans A8)

5e-98

486) Galf_2292
( YP_003848059.1 )

protein-export membrane protein SecD

NC_014394
(Gallionella capsiferriformans ES-2)

6e-98

487) secD
( YP_001632260.1 )

preprotein translocase subunit SecD

NC_010170
(Bordetella petrii DSM 12804)

1e-97

488) secD
( YP_007633648.1 )

Protein-export membrane protein SecD

NC_020799
(Ralstonia solanacearum FQY_4)

2e-97

489) secD
( NP_520836.1 )

preprotein translocase subunit SecD

NC_003295
(Ralstonia solanacearum GMI1000)

2e-97

490) Slit_0961
( YP_003523586.1 )

protein-export membrane protein SecD

NC_013959
(Sideroxydans lithotrophicus ES-1)

1e-96

491) secD
( YP_002028005.1 )

preprotein translocase subunit SecD

NC_011071
(Stenotrophomonas maltophilia R551-3)

8e-97

492) M301_2356
( YP_003675296.1 )

protein-export membrane protein SecD

NC_014207
(Methylotenera versatilis 301)

1e-96

493) secD
( YP_001971825.1 )

preprotein translocase subunit SecD

NC_010943
(Stenotrophomonas maltophilia K279a)

3e-96

494) secD
( YP_007552957.1 )

preprotein translocase subunit

NC_020516
(Azoarcus sp. KH32C)

5e-96

495) secD
( YP_003751466.1 )

SecYEG protein translocase auxillary subunit

NC_014311
(Ralstonia solanacearum PSI07)

5e-96

496) secD
( YP_005893448.1 )

protein-export membrane protein SecD

NC_017513
(Neisseria meningitidis G2136)

1e-95

497) PT7_2069
( YP_004417233.1 )

preprotein translocase subunit SecD

NC_015458
(Pusillimonas sp. T7-7)

6e-96

498) Pnuc_1791
( YP_001156568.1 )

protein-export membrane protein SecD

NC_009379
(Polynucleobacter necessarius QLW-P1DMWA-1)

7e-96

499) secD
( YP_005896263.1 )

protein-export membrane protein SecD

NC_017514
(Neisseria meningitidis M01-240149)

7e-96

500) secD
( YP_006184531.1 )

protein-export membrane protein SecD (TC 3.A.5.1.1)

NC_017671
(Stenotrophomonas maltophilia D457)

1e-95

501) secD
( YP_974646.1 )

preprotein translocase subunit SecD

NC_008767
(Neisseria meningitidis FAM18)

1e-95

502) NMBB_0672
( YP_005882244.1 )

putative protein-export membrane protein

NC_017505
(Neisseria meningitidis alpha710)

2e-95

503) secD
( YP_005901272.1 )

protein-export membrane protein SecD

NC_017517
(Neisseria meningitidis M01-240355)

2e-95

504) secD
( YP_005903275.1 )

protein-export membrane protein SecD

NC_017518
(Neisseria meningitidis NZ-05/33)

2e-95

505) secD
( YP_002342255.1 )

preprotein translocase subunit SecD

NC_003116
(Neisseria meningitidis Z2491)

2e-95

506) secD
( YP_006856938.1 )

preprotein translocase subunit SecD

NC_018708
(Acidovorax sp. KKS102)

3e-95

507) secD
( YP_785371.1 )

preprotein translocase subunit SecD

NC_010645
(Bordetella avium 197N)

5e-95

508) secD
( YP_003082711.1 )

preprotein translocase subunit SecD

NC_013016
(Neisseria meningitidis alpha14)

6e-95

509) secD
( YP_005879074.1 )

preprotein translocase subunit SecD

NC_017501
(Neisseria meningitidis 8013)

7e-95

510) secD
( YP_005898236.1 )

protein-export membrane protein SecD

NC_017515
(Neisseria meningitidis M04-240196)

7e-95

511) Msip34_2233
( YP_003052002.1 )

protein-export membrane protein SecD

NC_012969
(Methylovorus glucosetrophus SIP3-4)

1e-94

512) secD
( YP_005900216.1 )

protein-export membrane protein SecD

NC_017516
(Neisseria meningitidis H44/76)

2e-94

513) secD
( YP_005891455.1 )

preprotein translocase subunit SecD

NC_017512
(Neisseria meningitidis WUE 2594)

9e-95

514) secD
( YP_001598706.1 )

preprotein translocase subunit SecD

NC_010120
(Neisseria meningitidis 053442)

3e-94

515) A359_00310
( YP_006587866.1 )

SecD/SecF family protein-export membrane protein

NC_018419
(secondary endosymbiont of Ctenarytaina eucalypti )

1e-93

516) secD
( YP_003774661.1 )

export membrane protein SecD transmembrane

NC_014323
(Herbaspirillum seropedicae SmR1)

2e-93

517) secD
( YP_001475132.1 )

preprotein translocase subunit SecD

NC_009831
(Shewanella sediminis HAW-EB3)

2e-93

518) secD
( YP_001352043.1 )

preprotein translocase subunit SecD

NC_009659
(Janthinobacterium sp. Marseille)

3e-93

519) SCc_466
( YP_005060623.1 )

preprotein translocase subunit SecD

NC_016632
(Serratia symbiotica Cinara cedri)

6e-93

520) D521_1773
( YP_007503074.1 )

Protein-export membrane protein SecD

NC_020417
(beta proteobacterium CB CB)

6e-93

521) secD
( YP_001789384.1 )

preprotein translocase subunit SecD

NC_010524
(Leptothrix cholodnii SP-6)

2e-92

522) secD
( YP_004040571.1 )

protein-export membrane protein secd

NC_014733
(Methylovorus sp. MP688)

3e-92

523) secD
( YP_006968161.1 )

protein-export membrane protein

NC_019382
(Bordetella bronchiseptica 253)

5e-92

524) secD
( YP_006627031.1 )

protein-export membrane protein

NC_018518
(Bordetella pertussis 18323)

5e-92

525) secD
( YP_005589229.1 )

preprotein translocase subunit SecD

NC_017223
(Bordetella pertussis CS)

5e-92

526) secD
( NP_879831.1 )

preprotein translocase subunit SecD

NC_002929
(Bordetella pertussis Tohama I)

5e-92

527) secD
( NP_887906.1 )

preprotein translocase subunit SecD

NC_002927
(Bordetella bronchiseptica RB50)

1e-91

528) secD
( YP_006897303.1 )

protein-export membrane protein

NC_018828
(Bordetella parapertussis Bpp5)

1e-91

529) secD
( NP_883461.1 )

preprotein translocase subunit SecD

NC_002928
(Bordetella parapertussis 12822)

2e-91

530) secD
( YP_004751423.1 )

protein-export membrane protein

NC_015856
(Collimonas fungivorans Ter331)

2e-91

531) Pnec_1508
( YP_001798210.1 )

protein-export membrane protein SecD

NC_010531
(Polynucleobacter necessarius STIR1)

4e-91

532) secD
( YP_006899560.1 )

protein-export membrane protein

NC_018829
(Bordetella bronchiseptica MO149)

4e-91

533) secD
( YP_002898180.1 )

preprotein translocase subunit SecD

NC_012695
(Burkholderia pseudomallei MSHR346)

1e-90

534) secD
( YP_007825700.1 )

protein-export membrane protein

NC_021036
(Taylorella equigenitalis 14/56)

8e-91

535) secD
( YP_001019474.1 )

preprotein translocase subunit SecD

NC_008825
(Methylibium petroleiphilum PM1)

9e-91

536) secD
( YP_551426.1 )

preprotein translocase subunit SecD

NC_007948
(Polaromonas sp. JS666)

3e-90

537) secD
( YP_006503014.1 )

protein-export membrane protein

NC_018108
(Taylorella equigenitalis ATCC 35865)

3e-90

538) TEQUI_0365
( YP_004129455.1 )

protein-export membrane protein SecD

NC_014914
(Taylorella equigenitalis MCE9)

3e-90

539) secD
( YP_589026.1 )

protein-export membrane protein SecD

NC_007984
(Baumannia cicadellinicola Hc)

4e-90

540) secD
( YP_003622726.1 )

protein-export membrane protein SecD

NC_014145
(Thiomonas sp. 3As)

7e-88

541) Tint_0082
( YP_003641825.1 )

protein-export membrane protein SecD

NC_014153
(Thiomonas intermedia K12)

1e-87

542) secD
( YP_003167733.1 )

preprotein translocase subunit SecD

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

7e-87

543) secD
( YP_002890380.1 )

preprotein translocase subunit SecD

NC_011662
(Thauera sp. MZ1T)

2e-86

544) secD
( NP_901015.1 )

preprotein translocase subunit SecD

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-86

545) Fbal_2129
( YP_003913406.1 )

protein-export membrane protein SecD

NC_014541
(Ferrimonas balearica DSM 9799)

2e-85

546) secD
( YP_932408.1 )

preprotein translocase subunit SecD

NC_008702
(Azoarcus sp. BH72)

1e-84

547) RBRH_01676
( YP_004028079.1 )

protein translocase subunit secD

NC_014722
(Burkholderia rhizoxinica HKI 454)

2e-83

548) secD
( YP_984102.1 )

preprotein translocase subunit SecD

NC_008781
(Polaromonas naphthalenivorans CJ2)

2e-82

549) Rta_36970
( YP_004620832.1 )

preprotein translocase subunit SecD

NC_015677
(Ramlibacter tataouinensis TTB310)

1e-81

550) secD
( YP_525096.1 )

preprotein translocase subunit SecD

NC_007908
(Rhodoferax ferrireducens T118)

8e-82

551) secD
( YP_001208976.1 )

preprotein translocase, SecD subunit

NC_009446
(Dichelobacter nodosus VCS1703A)

4e-76

552) secD
( YP_663756.1 )

preprotein translocase subunit SecD

NC_008228
(Pseudoalteromonas atlantica T6c)

3e-73

553) secD
( YP_002297278.1 )

preprotein translocase subunit SecD

NC_011420
(Rhodospirillum centenum SW)

6e-70

• Sequence Alignments

1) secD in NC_007005


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  921 bits (3488),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 608/622 (98%), Positives = 619/622 (99%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALAD  60
            MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQV QADVDRAAKAL+D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLG  120
            AGI+VKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTP WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSLPQLGNVIQL  180
            A+PMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVK+LLRKEKVRYRSLPQLGNVIQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFTDDAEREQARALVRKSFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240
            GF DDAEREQARALVRK+FTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360
            MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQRPTTTYTRQMV+GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVS+FIMAIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGLIatvalalnmvmllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFGLIATVALA+NMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
            NGMTVQRAI+EGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMVTRAMVNLIYGGRDFKKLWI  622
            IMVTRAMVNLIYGGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

2) secD in NC_004578


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  921 bits (3489),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 609/622 (98%), Positives = 618/622 (99%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALTD  60
            MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQV QADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLG  120
            AGI+VKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTP WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKARYRSLPQLGNVIQL  180
            A+PMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVK+LLRKEK RYRSLPQLGNVIQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFTDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240
            GF DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360
            MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKE+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVS+FIMAIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGLIatvalalnmvmllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFGLIATVALA+NMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
            NGMTVQRAI+EGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMVTRAMVNLIYGGRDFKKLWI  622
            IMVTRAMVNLIYGGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

3) secD in NC_005773


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  920 bits (3487),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 607/622 (98%), Positives = 620/622 (99%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALAD  60
            MLNKYPLWKY+LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQV QADVDRAAKAL+D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGISVKASSLAENGKGGLLRLSKQEDQLSAKDVVRKALGDDYVVALNLARTTPTWLRNLG  120
            AGI+VKASSLAENGKGGLLRLSKQEDQL+AKDVVRKALGDDYVVALNLARTTP WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSLPQLGNVIQL  180
            A+PMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVK+LLRKEKVRYRSLPQLGNVIQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFSDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240
            GF+DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360
            MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQRPTTTYT+QMVNGVEKDVPVQTFKE+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFIMAIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGLIatvalalnmvmllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFGLIATVALA+NMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
            NGMTVQRAI+EGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMVTRAMVNLIYGGRDFKKLWI  622
            IMVTRAMVNLIYGGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

4) secD in NC_017911


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  876 bits (3316),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 547/622 (88%), Positives = 599/622 (97%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQISGASTSLQVNQADLDRASKALTD  60
            MLNKYPLWKYVLILAVL +GFIYSAPNLYPDD+AIQISGAST+LQV QAD+DRA+KALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIQVKAATLAAGSKGGLLRLTKQEDQLPAKDVVRKAMGDDYVVALNLAQTTPQWLRSIG  120
            AGI VKA++LA  +KGGLLRL+KQEDQLPAKDVVRKA+GDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRSLPQLNGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEG+VK+LLRKEK+RYRSLPQL   IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTVR  240
            GF+D+A REQARAL+RK F DF+I PA+LNG +VLR+A++PAK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAADPGATRATSE  300
            NRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A+P+ +++T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  EFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGTPEVNIRLDGHGGELMSRATRSNV  360
             FEFREG RP+A +ERGLIITGDQVTDAKA+F+EHG P+VNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLN  420
            GRSMAVIFIEQRP TTYT+QMVNGVEKDVPVQTFKE+KKIISLATIQSPLG+QFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA+LWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGVIATVALAGNMVmllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFG+IATVALA NMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  AGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
             GMTVQRAI+EGF+RA+TAILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMVTRAMVNLIFGGRDFKKLWI  622
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

5) secD in NC_012660


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  876 bits (3318),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/622 (88%), Positives = 598/622 (97%), Gaps = 0/622 (0%)

Query  2    MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQITGASTSLQVNQADLERASKALTD  61
            MLNKYPLWKYVLILAVL +GFIYSAPNLYPDD+AIQI+GAST+LQV QAD++RA+KALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  62   AGIQVKAATLAADAKGGLLRLTKQEDQLPAKDVVRKAMGDDYVVALNLAQTTPAWLRSIG  121
            AGI VKA++LA ++KGGLLRL+KQEDQLPAKDVVRKA+GDDYVVALNLA+TTP WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  122  AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRSLPQLNGAIQL  181
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEG+VK+LLRKEK+RYRSLPQL   IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  182  GFADEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTVR  241
            GF+D+A REQARAL+RK F DF+I PA+LNG +VLR+A++PAK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  242  NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGATRATSE  301
            NRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P+ +++T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  302  EFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGTPEVNIRLDGHGGELMSRATRSNV  361
             FEFREG RP+A +ERGLIITGDQVTDAKA+F+EHG P+VNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  362  GRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLN  421
            GRSMAVIFIEQRP TTYT+QMVNGVEKDVPVQTFKE+KKIISLATIQSPLG+QFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  422  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAIY  481
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA+LWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  482  RFFGIIATVALAGNMVmllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  541
            RFFG+IATVALA NMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  542  AGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  601
             GMTVQRAI+EGF+RA+TAILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  602  IMVTRAMVNLIFGGRDFKKLWI  623
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

6) secD in NC_021237


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  857 bits (3246),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 546/622 (88%), Positives = 601/622 (97%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAIGFIYSAPNLYPDDPAIQVSGASTALQVTQADLDRASKALTD  60
            MLNKYPLWKY+LILAVL +GFIYSAPNLYPDD+AIQ+SGASTALQVTQAD+DRA+KALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGINVKASSIAANGKGGLLRLTNKEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  120
            AGI VKASS+A NGKGGLLRL+++EDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERLRYRSLPQLNGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEG+VK+LLRKE++RYRSLPQL   IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFSDEDSREQARSLIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR  240
            GF+D+  REQAR+L+RK F DF+I PA+LNG PVLR+A+TPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P+ SK+T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  SFEFREGNRPPAQIERGLIITGDQVTDAQAGYDEHGRPQVNIKLDGHGGELMNRSTRSNV  360
             FEFREG RP+A +ERGLIITGDQVTDA+A++DEHGRPQVNI+LDGHGGELM+R+TRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQKPITTYTKQVVDGVEKDVPVQAFKEEKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQ+P TTYT+Q+V+GVEKDVPVQ+FKE+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGVIatvalalnmvlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFG+IATVALA+NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  AGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
             GMTVQRAI+EGF+RA+TAILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IWLTRAMVNLIFGGRDFKKLWI  622
            I +TRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

7) secD in NC_004129


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  857 bits (3246),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 546/622 (88%), Positives = 601/622 (97%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAIGFIYSAPNLYPDDPAIQVSGASTALQVTQADLDRASKALTD  60
            MLNKYPLWKY+LILAVL +GFIYSAPNLYPDD+AIQ+SGASTALQVTQAD+DRA+KALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGINVKASSIAANGKGGLLRLTNKEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  120
            AGI VKASS+A NGKGGLLRL+++EDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERLRYRSLPQLNGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEG+VK+LLRKE++RYRSLPQL   IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFSDEDSREQARSLIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR  240
            GF+D+  REQAR+L+RK F DF+I PA+LNG PVLR+A+TPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P+ SK+T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  SFEFREGNRPPAQIERGLIITGDQVTDAQAGYDEHGRPQVNIKLDGHGGELMNRSTRSNV  360
             FEFREG RP+A +ERGLIITGDQVTDA+A++DEHGRPQVNI+LDGHGGELM+R+TRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQKPITTYTKQVVDGVEKDVPVQAFKEEKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQ+P TTYT+Q+V+GVEKDVPVQ+FKE+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGVIatvalalnmvlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFG+IATVALA+NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  AGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
             GMTVQRAI+EGF+RA+TAILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IWLTRAMVNLIFGGRDFKKLWI  622
            I +TRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

8) secD in NC_019670


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  840 bits (3180),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 548/622 (89%), Positives = 595/622 (96%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYililavlavgliYSAPNLYPDDPAIQVSGASTALQVNQADLDRVSAALKE  60
            MLNKYPLWKY+LILAVL VG+IYSAPNLYPDD+AIQ+SGASTALQV QAD+DR + AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   SGINVKAATLAEGGKGGLIRLTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLA  120
            +GI VKA++LAE GKGGL+RL+K EDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRSLPQLNGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEG+VK+LLRKEK+RYRSLPQL   IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADEDSREQARVLIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR  240
            GF+D+  REQAR L+RK F DF+I PA+LNG PVLR+A+TPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSE  300
            NRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P+ SK+T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  SFEFREGGRPPALIERGLIITGDQVTDAKAGFDEHGRPEVNIRLDGHGGELMNRATRSNV  360
             FEFREGGRP+A +ERGLIITGDQVTDAKA+FDEHGRP+VNI LDGHGGELM+RATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPVTTYTKQVVNGVEKDVPVQSFKEEKKIISLATIQSPLGAQFRITGLN  420
            GRSMAVIFIEQRP TTYT+Q+VNGVEKDVPVQ+FKE+KKIISLATIQSPLG+QFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFIMAIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGLIatvalavnmvmllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFGLIATVALA NMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  AGMTVQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
             GMTVQRAI+EGF+RA+TAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMVTRAMVNLIFGGRDFKKLWI  622
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

9) secD in NC_020209


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  839 bits (3175),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 541/623 (87%), Positives = 596/623 (96%), Gaps = 1/623 (0%)

Query  1    MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQITGASTSLQVNQADLERASKALND  60
            MLNKYPLWKYVLILAVL +GFIYSAPNLYPDD+AIQI+GAST+LQV QAD++RA+KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIQVkaatlaagakggllrltkSEDQLPAKDVVRKAMGDDYVVALNLAQTTPQWLRSIG  120
            AGI VKA++LA  +KGGLLRL+K EDQLPAKDVVRKA+GDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRSLPQLNGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEG+VK+LLRKEK+RYRSLPQL   IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFSDEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTVR  240
            GF+D+A REQARAL+RK F DF+I PA+LNG +VLR+A++PAK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGATRATSE  300
            NRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P+ +++T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  EFEFREGNRPPALIERGLIITGDQVTDAKAGFDSQHGTPEVNIRLDGHGGDLMNRATRSN  360
             FEFREG RP+A +ERGLIITGDQVTDAKA+FD +HG P+VNI LDGHGG+LM+RATRSN
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGGELMSRATRSN  359

Query  361  VGRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGL  420
            VGRSMAVIFIEQRP TTYT+QMVNGVEKDVPVQTFKE+KKIISLATIQSPLG+QFRITGL
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGL  419

Query  421  NGQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAI  480
            NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA+LWGMLFVSLFI+AI
Sbjct  420  NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI  479

Query  481  YRFFGVIATVALAGNMVmllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEI  540
            YRFFG+IATVALA NMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI
Sbjct  480  YRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  541  AAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  600
            A GMTVQRAI+EGF+RA+TAILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  601  AIMVTRAMVNLIFGGRDFKKLWI  623
            AIMVTRAMVNLI+GGRDFKKLWI
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

10) PSEBR_a918 in NC_015379


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  837 bits (3170),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/622 (89%), Positives = 597/622 (96%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYvlilavlavgliYSAPNLYPDDPAIQVSGASTALQVTQADLDRASAALKA  60
            MLNKYPLWKYVLILAVL VG+IYSAPNLYPDD+AIQ+SGASTALQVTQAD+DRA+ AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   SNIEVKAASIAENGKGGLLRLAKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRKLG  120
            + I VKA+S+AENGKGGLLRL+K EDQLPAKDVVRKALGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  AHPMKLGLDLSGGVHFLLEVDMEKALDARLKVYEGDVKSLLRKERVRYRSLPQLDGAIQL  180
            A PMKLGLDLSGGVHFLLEVDM+KA+DARLKVYEG+VK+LLRKE+VRYRSLPQL+  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFSDTDTREQARSLIRKNFNDFDVVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR  240
            GF+D   REQAR+L+RK F DF++ PA+LNG PVLR+A+TPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSE  300
            NRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P+ SK+T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  SFEFREGNRPAAQIERGLIITGDQVTDAKAGFDEQGRPQVNIRLDGHGGELMSRATRSNV  360
             FEFREG RPAA +ERGLIITGDQVTDAKA+FDE+GRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQKPTTTYTKQVVNGVEKDVAVQTFKEEKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQ+PTTTYT+Q+VNGVEKDV+VQTFKE+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGIIatvalavnmvmllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFG+IATVALA NMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  AGMTIQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
             GMT+QRAI+EGF+RA+TAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMVTRAMVNLIFGGRDFKKLWI  622
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

11) secD in NC_016830


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  834 bits (3159),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 547/622 (88%), Positives = 597/622 (96%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYvlilavlavgliYSAPNLYPDDPAIQVSGASTALQVTQADLDRASAALKA  60
            MLNKYPLWKYVLILAVL VG+IYSAPNLYPDD+AIQ+SGASTALQVTQAD+DRA+ AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   SNIEVKAASIAENGKGGLLRLVKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRKLG  120
            + I VKA+S+AENGKGGLLRL K EDQLPAKDVVRKALGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  AHPMKLGLDLSGGVHFLLEVDMDKALDARMKVYEGDVKSLLRKDRVRYRSLPPLDGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DAR+KVYEG+VK+LLRK++VRYRSLP L+  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFSDEDTREQARALIRKNFNDFDIVPADLNGQAVLRLAMTPAKLAEIREYSIKQNLTTVR  240
            GF+D+  REQARAL+RK F DF+I PA+LNG +VLR+A+TPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSE  300
            NRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P+ SK+T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  SFEFREGGRPAAQIERGLIITGDQVTDAQAGFDEQGRPQVNIRLDGHGGELMSRATRSNV  360
             FEFREGGRPAA +ERGLIITGDQVTDA+A+FDE+GRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQKPTTTYTKQVVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQ+PTTTYT+Q+VNGVEKDVPVQTFKE+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIIAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGLIatvalavnmvlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            RFFGLIATVALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  AGMSIQRAINEGFGRAFTAIVDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600
             GM++QRAI+EGF+RA+TAI+D+NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  ILVTRAMVNLIYGGRDFKKLWI  622
            I+VTRAMVNLIYGGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

12) secD in NC_008463


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  831 bits (3146),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 521/622 (84%), Positives = 585/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKANSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA+SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGVDASLWGMLFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KGVDASLWGMLFVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMVTRAMVNLIFGGRDFKKLWI  620
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

13) secD in NC_007492


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  830 bits (3144),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/623 (88%), Positives = 592/623 (96%), Gaps = 1/623 (0%)

Query  1    MLNKYPLWKYililavlaigliYSAPNLYPDDPAIQISGASTALQVNQADLDRVSTALKE  60
            MLNKYPLWKY+LILAVL +G+IYSAPNLYPDD+AIQISGASTALQV QAD+DR + AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   SGINVKASSLAANGKGGLIRLTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLA  120
            +GI VKASSLA NGKGGL+RL+K EDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRSLPQLNGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEG+VK+LLRKEK+RYRSLPQL   IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFSDADSREQARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR  240
            GF+D   REQARAL+RK F DF+I PA+LNG PVLR+A+TPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSE  300
            NRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P+ SK+T+E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFEFREGKRPPAQIERGLIITGDQVTDAKAGFDSQHGTPEVNIRLDGHGGDLMNRATRSN  360
             FEFREG RP+A +ERGLIITGDQVTDAKA+FD +HG P+VNI LDGHGG+LM+RATRSN
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGGELMSRATRSN  359

Query  361  VGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGL  420
            VGRSMAVIFIEQRP TTY +Q+V+GVEKDVPVQTFKE+KKIISLATIQSPLG+QFRITGL
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGL  419

Query  421  NGQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI  480
            NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AI
Sbjct  420  NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI  479

Query  481  YRFFGLIatvalavnmvlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEI  540
            YRFFGLIATVALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI
Sbjct  480  YRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  541  AAGMTVQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  600
            A GMTVQRAI+EGF+RA+TAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  601  AIMVTRAMVNLIFGGRDFKKLWI  623
            AIMVTRAMVNLI+GGRDFKKLWI
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

14) secD in NC_020912


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  830 bits (3144),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 520/622 (84%), Positives = 585/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKANSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA+SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KG+DASLWGMLFVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMVTRAMVNLIFGGRDFKKLWI  620
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

15) secD in NC_018080


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  830 bits (3143),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 520/622 (84%), Positives = 584/622 (94%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKADSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLITKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KG+DASLWGMLFVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMVTRAMVNLIFGGRDFKKLWI  620
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

16) secD in NC_011770


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  830 bits (3143),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 520/622 (84%), Positives = 584/622 (94%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKADSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KG+DASLWGMLFVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMVTRAMVNLIFGGRDFKKLWI  620
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

17) secD in NC_017548


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  830 bits (3143),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 520/622 (84%), Positives = 584/622 (94%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKADSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KG+DASLWGMLFVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMVTRAMVNLIFGGRDFKKLWI  620
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

18) secD in NC_017549


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  830 bits (3144),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 521/622 (84%), Positives = 584/622 (94%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKADSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGVDASLWGMLFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KGVDASLWGMLFVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMVTRAMVNLIFGGRDFKKLWI  620
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

19) secD in NC_002516


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  830 bits (3143),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 520/622 (84%), Positives = 584/622 (94%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKADSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KG+DASLWGMLFVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMVTRAMVNLIFGGRDFKKLWI  620
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

20) secD in NC_021577


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  829 bits (3140),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 519/622 (84%), Positives = 584/622 (94%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKADSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVSRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P + YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KG+DASLWGMLFVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMVTRAMVNLIFGGRDFKKLWI  620
            IMVTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

21) secD in NC_008027


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  828 bits (3134),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 525/622 (85%), Positives = 590/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLIVVVLAVGFIYSAPNLYPDDPAVQISGASSALHVSQADLDRVTKALTD  60
            MLNKYPLWKY+LI+ VL VGFIYSAPNLYPDD+A+QISGAS+AL+V+QAD+DR +KALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGITVKGGSLGEKG-SALVRLTNQEDQLPAKDVARKALGDDYVVALNLAQTTPQWLRSLG  119
            AGI VK++SL+E+G ++L+RL++QEDQLPAKDV RKALGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARALIRKNFNDFDLTTTERNELAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQARAL+RK F DF++T +E N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAAVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRTNV  358
            +FEFREGGR +AAVERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVDGVEKEVAVQTFQEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V+GVEK+V+VQTF+E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RGFGVLATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  538
            R FG++AT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAY+AI+DANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRALVNLTCGGRDIKKLWV  620
            +MVTRA+VNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

22) secD in NC_010501


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  827 bits (3132),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/622 (85%), Positives = 587/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLAIGFIYSAPNLYPDDPAVQISGASSALQVNQSDLDRVSKALTE  60
            MLNKYPLWKY LI+ VL +GFIYSAPNLYPDD+A+QISGAS+ALQV Q+D+DR +KALT+
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGITVKGASLGEKG-SALVRLSNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            AGI VK++SL+E+G ++L+RLS+QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMSARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARALIRKNFSDFDLTTSERNETAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQARAL+RK F+DF++T +E N  +VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASRATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ S++TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAQVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNV  358
            +FEFREGGR +A VERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVNGVEKDVPVQSFLEEKKIISLATIQSPLGSQFRITGLD  418
            GRSMAVIFIEQ+P T Y +Q VNGVEKDVPVQ+F E+KKIISLATIQSPLGSQFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RAFGVLATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  538
            R FG++AT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAY+AI+DANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRALVNLTCGGRDIKKLWV  620
            +MVTRA+VNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

23) secD in NC_009656


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  827 bits (3130),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 517/622 (84%), Positives = 584/622 (94%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALSD  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQVTQADVDRAAKAL+D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKADSLSK--KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLG  118
            AGI+VKA SL+   KGGL+RL KQ+DQLPAK+VVR++LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERVRYRSLPIQDRAIQL  178
            ++PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYE+EVK+LLRKE+VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVALTQAKLAEIREYSIKQNLTTVR  238
            GF D    ++AR+L+ K F DFE+ P E NG+ VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDALKSAte  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  K++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  tfefreprrppvplerGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+ ++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T YT+QMV+GVEK+V+V +FKE+K+IISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GPGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGIDASLWGMVFVSLFIIVIY  478
            G GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KG+DASLWGM+FVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
            NGM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  ILVTRAMVNLIFGGRDFKKLWI  620
            I+VTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

24) secD in NC_002947


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  826 bits (3127),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/622 (85%), Positives = 587/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD  60
            MLNKYPLWKY LI+ VLVVGFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKIAVKGASLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I+VK++SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQARAL+RK F DF++T ++ N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAAVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNV  358
            +FEFREGGR +AAVERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V GVEKDV+VQ+F E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RAFGVLATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  538
            R FG++AT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAY+AI+DANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRALVNLTCGGRDIKKLWV  620
            +MVTRA+VNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

25) secD in NC_017530


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  825 bits (3123),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/622 (86%), Positives = 586/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD  60
            MLNKYPLWKY LI+ VLVVGFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKIAVKGASLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I+VK++SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMAARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARALIRKNFNDFELTTTERNELAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQARAL+RK F DFE+T +E N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAAVERGLIITGDQVTDAQASFDEHGSPQVNIRLDGHGGELMSRATRSNV  358
            +FEFREGGR +AAVERGLIITGDQVTDA+ASFDEHG PQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V GVEKDV+VQ+F E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RAFGVLATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREEIA  538
            R FG++AT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAY+AI+DANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRALVNLTCGGRDIKKLWV  620
            +MVTRA+VNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

26) YSA_06758 in NC_017986


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  825 bits (3124),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/622 (85%), Positives = 586/622 (95%), Gaps = 2/622 (0%)

Query  2    MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD  61
            MLNKYPLWKY LI+ VLVVGFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  62   AKIAVKGASLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  120
            A I+VK++SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  180
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIREYSIKQNLTTVR  240
            GF+DDA REQARAL+RK F DF++T ++ N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  VFEFREGGR-SAAVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNV  359
            +FEFREGGR +AAVERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  360  GRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLN  419
            GRSMAVIFIEQ+P T Y +Q V GVEKDV+VQ+F E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  420  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  479
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  480  RGFGVIATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREELK  539
            R FG+IAT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  540  AGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  599
             GM+VQRAI EGF+RAYTAI+DANLT+LLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  600  VMVTRAMVNLTCGGRDIKKLWV  621
            +MVTRAMVNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

27) secD in NC_018220


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  825 bits (3124),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/622 (85%), Positives = 586/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD  60
            MLNKYPLWKY LI+ VLVVGFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKIAVKGASLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I+VK++SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQARAL+RK F DF++T ++ N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAAVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNV  358
            +FEFREGGR +AAVERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V GVEKDV+VQ+F E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RGFGVIATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREELK  538
            R FG+IAT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAYTAI+DANLT+LLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRAMVNLTCGGRDIKKLWV  620
            +MVTRAMVNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

28) secD in NC_009512


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  825 bits (3124),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/622 (85%), Positives = 586/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD  60
            MLNKYPLWKY LI+ VLVVGFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKIAVKGASLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I+VK++SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQARAL+RK F DF++T ++ N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAAVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNV  358
            +FEFREGGR +AAVERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V GVEKDV+VQ+F E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RGFGVIATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREELK  538
            R FG+IAT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAYTAI+DANLT+LLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRAMVNLTCGGRDIKKLWV  620
            +MVTRAMVNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

29) secD in NC_021505


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  825 bits (3125),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 527/622 (85%), Positives = 588/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD  60
            MLNKYPLWKY LI+ VLVVGFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKIAVKGASLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I+VK++SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERIRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE++RYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARALIRKNFNDFDLTTTERNDLAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQARAL+RK F DF++T +E N+++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAPVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNV  358
            +FEFREGGR +A+VERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V+GVEKDV+VQ+F E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RGFGVIATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREELK  538
            R FG+IAT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAYTAI+DANLT+LLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRAMVNLTCGGRDIKKLWV  620
            +MVTRAMVNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

30) PPS_0901 in NC_015733


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  825 bits (3124),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 524/622 (85%), Positives = 586/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLAIGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD  60
            MLNKYPLWKY LI+ VL +GFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKIAVKGVSLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I+VK+ SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMNARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA++AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARVLIRKNFNDFDLTTTERNELAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQAR L+RK F DF++T +E N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAAVERGLIITGDQVTDAQASFDEQGRPQVNIRLDGHGGELMTRATRSNV  358
            +FEFREGGR +AAVERGLIITGDQVTDA+ASFDE+GRPQVNI LDGHGGELM+RATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFQEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V+GVEKDV+VQ+F+E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RAFGVIATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREELN  538
            R FG+IAT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAYTAI+DANLT+LLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRAMVNLTCGGRDIKKLWV  620
            +MVTRAMVNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

31) secD in NC_020829


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  825 bits (3124),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/622 (81%), Positives = 588/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVSQadldkagkalad  60
            MLNKYPLWKY+LILAVL VGFIYSAPNLYPDD+A+QISGASTALQV+QAD+D+A+KAL+D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   agIAVKAGSLGKNS--GLIRLARQEDQLPAKDIVRRALGDDYVVALNLAQTTPNWLRNIA  118
            AGI+VKA+SL+ N+  GL+RL++QEDQLPAKD+VR+ALGDDYVVALNLA+TTPNWLRN++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AHPMKLGLDLSGGVHFLLEVDMDKAVDARMKVYESEIKSALRKDRVRYRSLPAQDGGIQL  178
            A PMKLGLDLSGGVHFLLEVDMDKA+DAR+KVYE+E+K+ LRK++VRYRSLP  +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFTEEADLDKAKSLIAKDYRDFEVTQSERTGMQVLRLGMTPAKLAEIREYSIKQNLTTVR  238
            GF ++A+ ++A++L+ K + DFE+T +E  G+ VLR+++TPAKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPDAIRSATE  298
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A PD  +++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  TFEFREPRRPPATLERGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE  RP+A++ERG+IITGDQVTDA ASFDE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVVFIEQKPITRYAKQVVDGVEQEVAVPAFKEEKKIISLATIQSPLGNQFRITGLD  418
            GRSMAV+FIEQ+P T Y++Q+V+GVE++V+V +FKE+KKIISLATIQSPLG+QFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  APGESSElalllragglaaPMYFAEERTIGPSLGADNIAKGIDASLWGMVFVSLFIIVIY  478
            + GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNI+KG+DASLWGM+FVSLFI+ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVIATVALAFNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA  538
            RFFG+IATVALAFNMVML+ALMS+LGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTA  598
             GM+VQRAI EGF+RA+TAILDANLT+LLVGGIL+AMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  ILVTRAMVNLIFGGRDFKKLWI  620
            I+VTRAMVNLI+GGRDFKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

32) secD in NC_010322


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  824 bits (3121),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/622 (85%), Positives = 585/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD  60
            MLNKYPLWKY LI+ VLVVGFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKITVKGASLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I VK++SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERIRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE++RYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARVLIRKNFNDFDLTTTERNELAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQAR L+RK F DF++T +E N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAPVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNV  358
            +FEFREGGR +A+VERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V+GVEKDV+VQ+F E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RGFGVIATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREELK  538
            R FG+IAT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAYTAI+DANLT+LLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRAMVNLTCGGRDIKKLWV  620
            +MVTRAMVNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

33) secD in NC_021491


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  824 bits (3120),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/622 (85%), Positives = 588/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALLD  60
            MLNKYPLWKY LI+ VLVVGFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKIAVKGASLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I+VK++SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA+ AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARALIRKNFNDFDLTTTERNDLAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQARAL+RK F DF++T +E N+++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAPVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNV  358
            +FEFREGGR +A+VERGLIITGDQVTDA+ASFDEHGRPQVNI LDGHGGELMSRATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V+GVEKDV+VQ+F E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RGFGVIATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREELK  538
            R FG+IAT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAYTAI+DANLT+LLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRAMVNLTCGGRDIKKLWV  620
            +MVTRAMVNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

34) secD in NC_019905


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  824 bits (3120),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 524/622 (85%), Positives = 586/622 (95%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKYALIVLVLAIGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALGD  60
            MLNKYPLWKY LI+ VL +GFIYSAPNLYPDD+A+QISGAS+ALQV QAD+DR +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AKIAVKGVSLGEKG-SGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLG  119
            A I+VK+ SL+E+G +GL+RL++QEDQLPAKDVVRKALGDDYVVALNLA+TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  120  ASPMKLGLDLSGGVHFLLEVDMDKAMNARMKVYEGEVKTLLRKERVRYRSLPQQDGGIML  179
            A+PMKLGLDLSGGVHFLLEVDMDKA++AR+KVYEGEVK+LLRKE+VRYRSLPQ +  I L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  180  GFADDATREQARVLIRKNFNDFDLTTTERNELAVLRLALTQAKVAEIREYSIKQNLTTVR  239
            GF+DDA REQAR L+RK F DF++T +E N ++VLR+ALT AK+AEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  240  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTE  299
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR+GA P+ SK+TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  300  VFEFREGGR-SAAVERGLIITGDQVTDAQASFDEQGRPQVNIRLDGHGGELMTRATRSNV  358
            +FEFREGGR +AAVERGLIITGDQVTDA+ASFDE+GRPQVNI LDGHGGELM+RATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFQEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQ+P T Y +Q V+GVEKDV+VQ+F+E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG+DASLWGMLFVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RAFGVIATIALAGNMVlllalmsllgatltlPGIAGIVLTMGMAVDANVLIFSRIREELN  538
            R FG+IAT+ALA NMV+LLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  AGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  598
             GM+VQRAI EGF+RAYTAI+DANLT+LLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  VMVTRAMVNLTCGGRDIKKLWV  620
            +MVTRAMVNL  GGRD+KKLW+
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

35) secD in NC_015740


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  799 bits (3024),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/622 (78%), Positives = 577/622 (93%), Gaps = 0/622 (0%)

Query  1    MLNRFPLWKYllilavlavafvYSAPNLYPDDPAIQVTGASAAQEIGMADLERISQALEE  60
            MLN++PLWKY+LILAVL V+F+YSAPNLYPDD+AIQ++GAS+A ++  AD++R ++AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   GGIAVKSASLDEQGRGGLVRLERQDDQLPAKDIVRRTLGDAYVVALNLAPTTPDWLRSLG  120
            +GI+VK++SL E+G+GGL+RL +Q+DQLPAKD+VR++LGD YVVALNLA TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERVRYRSLPNLKDAVQL  180
            A+PMKLGLDLSGGVHFLLEVDM+KAI++RL+V EGEVK+LLRKE+VRYRSLP+L + +QL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADQETLSAAQSLIRKNFTDFELTTSERNGQFVLRLTLTEAKLAEIREYSIKQNLTTVR  240
            GF+D+     A++L+RK FTDFE+T +E NG  VLR++LT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAESDAPRASTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A +D ++++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFEFREEGRPPVQLERTLIITGDQVTDAQASYDENGRPQVNIRLDGHGGDLMNRATRSNV  360
             FEFRE GRP+  +ER LIITGDQVTDA+AS+DE+GRPQVNI LDGHGG+LM+RATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPLTRYVRQMVDGVEQEVRVETFQEEKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQRP T Y RQMV+GVE++V V+TF+E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI  GV+A++WG LFV++F++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  KFFGVLATIALLFNMVALTALMSMLNATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            +FFG++AT+AL FNMV L ALMS+L ATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILTSMFTA  600
            NGM++QRAI EGFDRA++AILD+NLTTLLVGGILFAMGTGP+KGFAVT+S+GI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IIVTRGMVNLIYGGRDLKKLWI  622
            I+VTR+MVNLIYGGRD+KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

36) secD in NC_017532


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/622 (78%), Positives = 576/622 (93%), Gaps = 0/622 (0%)

Query  1    MLNRFPLWKYllilavlavafvCSAPNLYPDDPAIQVTGASAAQEIGMADLERISQALEE  60
            MLN++PLWKY+LILAVL V+F+ SAPNLYPDD+AIQ++GAS+A ++  AD++R ++AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   GGIAVKSASLDEQGRGGLVRLERQDDQLPAKDIVRRTLGDAYVVALNLAPTTPDWLRSLG  120
            +GI+VK++SL E+G+GGL+RL +Q+DQLPAKD+VR++LGD YVVALNLA TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERVRYRSLPNLKDAVQL  180
            A+PMKLGLDLSGGVHFLLEVDM+KAI++RL+V EGEVK+LLRKE+VRYRSLP+L + +QL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADQETLSAAQSLIRKNFTDFELTTSERNGQFVLRLTLTEAKLAEIREYSIKQNLTTVR  240
            GF+D+     A++L+RK FTDFE+T +E NG  VLR++LT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAESDAPRASTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A +D ++++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFEFREEGRPPVQLERTLIITGDQVTDAQASYDENGRPQVNIRLDGHGGDLMNRATRSNV  360
             FEFRE GRP+  +ER LIITGDQVTDA+AS+DE+GRPQVNI LDGHGG+LM+RATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPLTRYVRQMVDGVEQEVRVETFQEEKKIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQRP T Y RQMV+GVE++V V+TF+E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI  GV+A++WG LFV++F++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  KFFGVLATIALLFNMVALTALMSMLNATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            +FFG++AT+AL FNMV L ALMS+L ATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILTSMFTA  600
            NGM++QRAI EGFDRA++AILD+NLTTLLVGGILFAMGTGP+KGFAVT+S+GI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IIVTRGMVNLIYGGRDLKKLWI  622
            I+VTR+MVNLIYGGRD+KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

37) Psefu_3310 in NC_015556


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  795 bits (3008),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/622 (77%), Positives = 574/622 (93%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYlliaavlivsliYSAPNLYPDDPAIQISGASSAQTITEADLERVSKALTE  60
            MLNKYPLWKY+LI AVL+V++IYSAPNLYPDD+AIQISGAS+A  +T+AD++R +KALT+
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGLEVKAASVGEHGRSGLIRLVSQGDQLPAKDVVRKVLGDNFVVALNLAQTTPEWLRKVG  120
            AG+ VKA+S++E+G++GL+RL  Q DQLPAKDVVRK LGD++VVALNLA+TTP+WLR+VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKALEVRRQVYEGELKSLLRKERVRYRSMPQQSGAIQL  180
            A+PMKLGLDLSGGVHFLLEVDMDKA++ R +VYEGE+K+LLRKE+VRYRS+PQ +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADADTLAKAEQLIRKDYKDFNLEAQERGGQQVLRVTMTPAKIAEIREYSIRQNLTTVR  240
            GF+D     +A  L+RK + DF++ + E  G  VLR+++TPAK+AEIREYSI+QNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAADPNAPRGTTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A+P+ ++GTTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  QFGFREEGRPPVQLERELIITGDQVTDAQASFDENGRPQVNIRLDGHGGDLMNRATRSNV  360
             F FRE GRP+  +ER LIITGDQVTDA+ASFDE+GRPQVNI LDGHGG+LM+RATRSNV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPLTRYVKQMVDGVEKEVQVDSFKEEKQIISLATIQSPLGSQFRITGLN  420
            GRSMAVIFIEQRP T Y +QMV+GVEK+V V++FKE+K+IISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGAENIVKGIESTEWAMIFVSLFMICIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI KG++++ W+M+FVSLF++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGFLATIALAFNLTLLVGLMSVIGATLTLPGIAGIVLTLGMAVDANVLIYSRIREELN  540
            RFFG++AT+ALAFN+ +L++LMS++GATLTLPGIAGIVLT+GMAVDANVLI+SRIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGLSVQRAIHEGFDRAYTAILDSNLTTLLVGAILFGLGTGPIKGFAVTLSIGIITSMFTA  600
            NG++VQRAI EGFDRAYTAILD+NLTTLLVG+ILF++GTGP+KGFAVT+S+GI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMFTRGMVNLIFGGRNFKKLWI  622
            IM TR+MVNLI+GGR+FKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

38) secD in NC_018177


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  794 bits (3005),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 492/622 (80%), Positives = 576/622 (93%), Gaps = 0/622 (0%)

Query  1    MLNRFPLWKYllilvvlavaCIYSAPNLYPDDPAVQITGATTSLNVTEADLSRAGAALEE  60
            MLN++PLWKY+LIL VL V+ IYSAPNLYPDD+A+QI+GA+T+L+VT+AD+ RA+ AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIEVKETSLDEQGRGGLLRLAHQDDQLPAKDVIRRALGDAYVVALNLAPTTPDWLRNLG  120
            AGI VK +SL E+G+GGLLRL+ Q+DQLPAKDV+R+ALGD YVVALNLA TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKAVETRLNVHEGEVKSLLRKERVRYRSLPTQGNAVQL  180
            A+PMKLGLDLSGGVHFLLEVDMDKA+++RL+V EGEVK+LLRKE+VRYRSLP  GN +QL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADQATLSSAQALIRKNFNDFEITSSERNGQQVLRLALTEAKLAEIREYSIKQNLTTVR  240
            GF+D+A    A+AL+RK F DFEIT++E NG  VLR+ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEADAPRATTE  300
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A +D +++TTE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFEFRQEGRPPAQLERTLIITGDQVTDAQASYDENGRPQVNIRLDGHGGELMNRATRNNV  360
             FEFR+ GRP+A +ER LIITGDQVTDA+AS+DE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVVFIEQRPQTRYVKRMVDGVeqeerietfqeeKKIISLATIQSPLGSQFRITGLD  420
            GRSMAV+FIEQRP T Y ++MV+GVE++  ++TF+E+KKIISLATIQSPLGSQFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGAENITLGVQAALWGFLFVAIFMVLIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NIT GV+A+LWG LFV++F++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  KVFGLLATVALLFNMVVLMALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIQ  540
            + FGL+ATVAL FNMV+L+ALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGMSVQRAIHEGFDRALSAIVDGNLTTLLVGGILFAMGTGPIKGFAVTLSLGILTSMFTA  600
            NGM+VQRAI EGFDRA +AI+D+NLTTLLVGGILFAMGTGP+KGFAVT+SLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  VIVTRAMVNLIYGGRDLKKLWI  622
            ++VTRAMVNLIYGGRD+KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

39) MDS_3783 in NC_015410


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  794 bits (3006),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/622 (78%), Positives = 573/622 (93%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYLLILSVLAIGLVYSIPNLYPDDPAVQISGASSALSIQQADVDRASKALTD  60
            MLNKYPLWKY+LIL+VL +G++YS PNLYPDD+A+QISGAS+AL + QADVDRA+KALTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKAASIDERGRGGLIRLIKQDDQLPAKDIVRRALGDDYVVALNLAQTTPDWLRSLG  120
            AGI+VKA+S+ E G+GGL+RL KQ+DQLPAKD+VR+ALGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERVRYRSMPESNGRIQL  180
            A+PMKLGLDLSGGVHFLLEVDMDKA+D R KVYEGE+K+LLRKE+VRYRS+P+    IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADSDSLDKAQRLIRKDYSDFELTTVERNGQQILQLGLTQAKIAEIREYSIRQNLTTVR  240
            GF+D    ++A+ L+RK ++DFE+T  E NG  +L+++LT AK+AEIREYSI+QNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGASRIVVELPGVQDTAEAKRILGKTANLEFRLQADFDAPRGATE  300
            NRVNELGVAEPLVQRQGA+RIVVELPGVQDTAEAKRILGKTANLEFRL A+ D ++G+TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  AFGFREEGRPPVQLERELIITGDQVTDAQASFDENGRPQVNIRLDGHGGDLMNRATRNNV  360
             F FRE GRP+  +ER LIITGDQVTDA+ASFDE+GRPQVNI LDGHGG+LM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQKPVTRYVRQNVDGVEQEVAVSSFVEEKKIISLATIQSALGSQFRITGLN  420
            GRSMAVIFIEQ+P T Y RQ V+GVE++V+V +F E+KKIISLATIQS+LGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGAENIAKGIASTEWAMvfvaifiiaiY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI+KG+ ++ W+M+FV++FI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELA  540
            RFFG++ATVALAFN+V+L++LMS +GATLTLPGIAGIVLT+GMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGLPVQRAIHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSMFTA  600
            NG+ VQRAI EGFDRAY+AILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGI TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMFTRGLVNLIFGGRNVKKLWI  622
            IM TR++VNLI+GGR+ KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

40) secD in NC_009439


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  793 bits (3003),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/622 (79%), Positives = 573/622 (93%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKyllilavlaiglvySIPNLYPDDPAVQISGASSALSIEQGDVERASKALQD  60
            MLNKYPLWKY+LILAVL +G++YS PNLYPDD+A+QISGAS+AL + Q+DV+RA+KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIQVKAASLDERGRGGLIRLTKQDDQLPAKDIVRRVLGDDYVVALNLAQTTPDWLRSLG  120
            AGI VKA+SL E G+GGL+RL+KQ+DQLPAKD+VR+ LGDDYVVALNLA+TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERIRYRSMPEQGGRIQL  180
            A+PMKLGLDLSGGVHFLLEVDMDKA+D R KVYEGE+K+LLRKE++RYRS+P+ G  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADSDTLEKAQRLIRKDYNDFELTTVERGGQQVLQLALTQAKIAEIREYSIRQNLTTVR  240
            GF+D    E+A+ L+RK + DFE+T  E  G  VL++ALT AK+AEIREYSI+QNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLQADLDAPRGATE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL A+ D ++G+TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFGFREEGRPPVQLERELIITGDQVTDAQASFDENGRPQVNIRLDGHGGDLMNRATRNNV  360
             F FRE GRP+  +ER LIITGDQVTDA+ASFDE+GRPQVNI LDGHGG+LM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQKPVTRYVRQTVDGVEQEVAVSSFVEEKKIISLATIQSALGSQFRITGLN  420
            GRSMAVIFIEQ+P T Y RQ V+GVE++V+V +F E+KKIISLATIQS+LGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGAENIAKGIESTEWAMIFVALFIIAIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI+KG++++ W+M+FV+LFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  RFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELA  540
            RFFG++ATVALAFN+V+L++LMS +GATLTLPGIAGIVLT+GMAVDANVLIFSRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGLHVQRAIHEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIITSMFTA  600
            NG+ VQRAI EGFDRAY+AILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IMFTRGLVNLIFGGRNFKKLWI  622
            IM TR++VNLI+GGR+FKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

41) secD in NC_018028


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  792 bits (2997),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/622 (79%), Positives = 582/622 (94%), Gaps = 0/622 (0%)

Query  1    MLNRFPLWKYllilavlaiafiYSAPNLYPDDPAIQVTGASTSQEIGEADLERISKALVD  60
            MLN++PLWKY+LILAVL ++FIYSAPNLYPDD+AIQ++GAST+ ++ +AD++R +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   GGIAVKSASLDEQGRGGLVRLERQDDQLPAKDIVRRALGDAYVVALNLAPTTPDWLRNLG  120
            +GI+VK++SL E+G+GGL+RL +Q+DQLPAKD+VR+ALGD YVVALNLA TTP+WLRN+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMDKAIETRLNVSEGEVKSLLRKERVRYRSLPNLKDSVQL  180
            A+PMKLGLDLSGGVHFLLEVDMDKAI++RL+V EGEVK+LLRKE+VRYRSLP+L + +QL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADEATLDAAQSLIRKEFTDFELTSAERNGQYVLRLTLTEAKLAEIREYSIKQNLTTVR  240
            GF+D+A  + A++L+RK FTDFE+T+AE NG  VLR++LT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLaadsdasrasTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A++D S+++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFEFREEGRPPVQLERTLIITGDQVTDAQASYDENGRPQVNIRLDGHGGDLMNRATRNNV  360
             FEFRE GRP+  +ER LIITGDQVTDA+AS+DE+GRPQVNI LDGHGG+LM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPMTRYVRQTVDGVEQEVRVETFQEEKKIISLATIQSPLGSQFRITGLD  420
            GRSMAVIFIEQRP T Y RQ V+GVE++V V+TF+E+KKIISLATIQSPLGSQFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI  GV+A++WG LFV++F++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  KFFGVLATIALLFNMVVLTALMSMLNATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            +FFG++AT+AL FNMV+L ALMS+L ATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGMSIQRAIHEGFDRAFSAIVDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILTSMFTA  600
            NGM++QRAI EGFDRA++AI+D+NLTTLLVGGILFAMGTGP+KGFAVT+S+GI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IIVTRAMVNLIYGGRDLKKLWI  622
            I+VTRAMVNLIYGGRD+KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

42) Psest_1244 in NC_019936


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  790 bits (2990),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/622 (78%), Positives = 581/622 (94%), Gaps = 0/622 (0%)

Query  1    MLNRFPLWKYllilavlaiaFVYSAPNLYPDDPAIQVTGASTAQEIGTEDLERISKALVD  60
            MLN++PLWKY+LILAVL ++F+YSAPNLYPDD+AIQ++GASTA ++   D++R +KAL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   GGIAVKSASLDEQGRGGLVRLERQDDQLPAKDIVRRTLGDAYVVALNLAPTTPDWLRSLG  120
            +GI+VK++SL E+G+GGL+RL +Q+DQLPAKD+VR++LGD YVVALNLA TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERVRYRSLPNLKDAVQL  180
            A+PMKLGLDLSGGVHFLLEVDM+KAI++RL+V EGEVK+LLRKE+VRYRSLP+L + +QL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADEATLGNAQSLIRKNFTDFELTSSERNGQFVLRLTLTEAKLAEIREYSIKQNLTTVR  240
            GF+D+A   +A++L+RK FTDFE+T++E NG  VLR++LT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFrlaadadasrasTE  300
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A++D S+++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  AFEFRQEGRPPVQLERTLIITGDQVTDAQASYDENGRPQVNIRLDGHGGDLMNRATRNNV  360
             FEFR+ GRP+  +ER LIITGDQVTDA+AS+DE+GRPQVNI LDGHGG+LM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRSMAVIFIEQRPMTRYVRQMVDGVEQEVRVETFQEEKKIISLATIQSPLGSQFRITGLD  420
            GRSMAVIFIEQRP T Y RQMV+GVE++V V+TF+E+KKIISLATIQSPLGSQFRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLIY  480
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI  GV+A++WG LFV++F++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  KFFGVLATIALLFNMVVLTAMMSMLNATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            +FFG++AT+AL FNMV+L A+MS+L ATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGMSIQRAIHEGFDRAFSAIVDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILTSMFTA  600
            NGM++QRAI EGFDRA++AI+D+NLTTLLVGGILFAMGTGP+KGFAVT+S+GI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IIVTRGMVNLIYGGRDLKKLWI  622
            I+VTR+MVNLIYGGRD+KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

43) secD in NC_021150


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  785 bits (2971),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 494/622 (80%), Positives = 581/622 (94%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYllilavllvgivYSAPNLFPDDPAIQISGASAARQIGQGDLEHVGKALAE  60
            MLNKYPLWKY+LILAVL+VG++YSAPNL+PDD+AIQISGAS+A Q+ Q+D+++ +KAL++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKASSLTDEGKTGLLRLVDQGRQLEAKDVARKVLGDDYVVALNLAPTTPGWLRALG  120
            AGI+VKASSL+++GK GLLRL  Q  QL AKDV RK LGDDYVVALNLA TTP WLR +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ANPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGEVKSLLRKERQRYRSLPQQDGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEGEVK+LLRKE+ RYRSLPQ +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADSGQLEQAQASIRKNFSDFDLSAGERNGQPVLRLTLTAAKLAEIREYSIRQNLTTVR  240
            GF+D ++ EQA+A +RK F+DF+++++E NG PVLR++LT+AKLAEIREYSI+QNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRMAAESDASRAITE  300
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTA+LEFR++A +D S++ TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFEFREGGRPPVALERSLIITGDQVTDAQASYDENGRPQVNIRLDGHGGELMNRATRNSV  360
             FEFREGGRP+ A+ER+LIITGDQVTDA+AS+DE+GRPQVNI LDGHGGELM+RATR++V
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRAMAVLFIEQKPVTRYVKQTIDGVEKEVAVETFREEKKIISLATIQSPLGSQFRITGLN  420
            GR+MAV+FIEQ+P T Y +Q ++GVEK+V+V+TF+E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTLGPSLGAENIQLGIQASLWGFLFVTLFMLLIY  480
            GQGESSELALLLRAGGLAAPMYFAEERT+GPSLGA+NI  G++ASLWG LFV+LF++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  KffgllaavalafNMVLLVALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            +FFGL+A+VALAFNMV+L+ALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGLSVQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSLFTA  600
            NG++VQRAI EGFDRA++AILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGI TS+FTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IIVTRGMVNLIYGGRDLKKLWI  622
            I+VTR+MVNLIYGGRD+KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

44) secD in NC_021149


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  785 bits (2971),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 494/622 (80%), Positives = 581/622 (94%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYllilavllvgivYSAPNLFPDDPAIQISGASAARQIGQGDLEHVGKALAE  60
            MLNKYPLWKY+LILAVL+VG++YSAPNL+PDD+AIQISGAS+A Q+ Q+D+++ +KAL++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKASSLTDEGKTGLLRLVDQGRQLEAKDVARKVLGDDYVVALNLAPTTPGWLRALG  120
            AGI+VKASSL+++GK GLLRL  Q  QL AKDV RK LGDDYVVALNLA TTP WLR +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ANPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGEVKSLLRKERQRYRSLPQQDGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEGEVK+LLRKE+ RYRSLPQ +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADSGQLEQAQASIRKNFSDFDLSAGERNGQPVLRLTLTAAKLAEIREYSIRQNLTTVR  240
            GF+D ++ EQA+A +RK F+DF+++++E NG PVLR++LT+AKLAEIREYSI+QNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRMAAESDASRAITE  300
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTA+LEFR++A +D S++ TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFEFREGGRPPVALERSLIITGDQVTDAQASYDENGRPQVNIRLDGHGGELMNRATRNSV  360
             FEFREGGRP+ A+ER+LIITGDQVTDA+AS+DE+GRPQVNI LDGHGGELM+RATR++V
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRAMAVLFIEQKPVTRYVKQTIDGVEKEVAVETFREEKKIISLATIQSPLGSQFRITGLN  420
            GR+MAV+FIEQ+P T Y +Q ++GVEK+V+V+TF+E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTLGPSLGAENIQLGIQASLWGFLFVTLFMLLIY  480
            GQGESSELALLLRAGGLAAPMYFAEERT+GPSLGA+NI  G++ASLWG LFV+LF++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  KffgllaavalafNMVLLVALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            +FFGL+A+VALAFNMV+L+ALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGLSVQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSLFTA  600
            NG++VQRAI EGFDRA++AILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGI TS+FTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IIVTRGMVNLIYGGRDLKKLWI  622
            I+VTR+MVNLIYGGRD+KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

45) secD in NC_012560


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  785 bits (2971),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 494/622 (80%), Positives = 581/622 (94%), Gaps = 0/622 (0%)

Query  1    MLNKYPLWKYllilavllvgivYSAPNLFPDDPAIQISGASAARQIGQGDLEHVGKALAE  60
            MLNKYPLWKY+LILAVL+VG++YSAPNL+PDD+AIQISGAS+A Q+ Q+D+++ +KAL++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAVKASSLTDEGKTGLLRLVDQGRQLEAKDVARKVLGDDYVVALNLAPTTPGWLRALG  120
            AGI+VKASSL+++GK GLLRL  Q  QL AKDV RK LGDDYVVALNLA TTP WLR +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  121  ANPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGEVKSLLRKERQRYRSLPQQDGAIQL  180
            A PMKLGLDLSGGVHFLLEVDMDKA+DARLKVYEGEVK+LLRKE+ RYRSLPQ +  IQL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  181  GFADSGQLEQAQASIRKNFSDFDLSAGERNGQPVLRLTLTAAKLAEIREYSIRQNLTTVR  240
            GF+D ++ EQA+A +RK F+DF+++++E NG PVLR++LT+AKLAEIREYSI+QNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  241  NRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTASLEFRMAAESDASRAITE  300
            NRVNELGV+EPLVQRQGANRIVVELPGVQDTAEAKRILGKTA+LEFR++A +D S++ TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  301  TFEFREGGRPPVALERSLIITGDQVTDAQASYDENGRPQVNIRLDGHGGELMNRATRNSV  360
             FEFREGGRP+ A+ER+LIITGDQVTDA+AS+DE+GRPQVNI LDGHGGELM+RATR++V
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  361  GRAMAVLFIEQKPVTRYVKQTIDGVEKEVAVETFREEKKIISLATIQSPLGSQFRITGLN  420
            GR+MAV+FIEQ+P T Y +Q ++GVEK+V+V+TF+E+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  421  GQGESSElalllragglaaPMYFAEERTLGPSLGAENIQLGIQASLWGFLFVTLFMLLIY  480
            GQGESSELALLLRAGGLAAPMYFAEERT+GPSLGA+NI  G++ASLWG LFV+LF++ IY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  481  KffgllaavalafNMVLLVALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540
            +FFGL+A+VALAFNMV+L+ALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  541  NGLSVQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSLFTA  600
            NG++VQRAI EGFDRA++AILD+NLTTLLVGGILFAMGTGPVKGFAVTMSLGI TS+FTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  601  IIVTRGMVNLIYGGRDLKKLWI  622
            I+VTR+MVNLIYGGRD+KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

46) secD in NC_021499


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  768 bits (2906),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/622 (80%), Positives = 580/622 (94%), Gaps = 2/622 (0%)

Query  1    MLNKYPLWKyllilavlaiglvySAPNLYPDDPAIQITGTSTALKIqqadldkaaaaleq  60
            MLNKYPLWKY+LILAVL +G++YSAPNLYPDD+AIQI+G+STAL++ QAD+D+AA AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   agialkaSSLSQTG--GLLRLTKLGDQLPAKDVVRKALGDDFVVALNLAPTTPNWLRKLG  118
            AGI++KASSL++ G  GLLRL+K  DQLPAKDVVRKALGDD+VVALNLA TTPNWLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  ATPMKLGLDLSGGVHFLLEVDMEKAVDARLKIYEGEVRTLLRKERIRYRSLPATENGFQL  178
            ATPMKLGLDLSGGVHFLLEVDM+KA+DARLK+YEGEV++LLRKE++RYRSLP   N +QL
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  GFSDQESLDKARVLIRKSFTDFDLTDAERGGQQVLQLALTQAKLAEIREYSIKQNLTTVR  238
            GF+D+   ++AR L+RK+FTDF++T AE  G  VL++ALT AKLAEIREYSIKQNLTTVR
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPTASKASTE  298
            NRVNELGVAEP+VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL+A P  SK++TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  TFEFREPGRPPVQLERGLIITGDQVTDAQASYDENGRPQVNIRLDGHGGELMNRATRNNV  358
             FEFRE GRP+  +ERGLIITGDQVTDA+AS+DE+GRPQVNI LDGHGGELM+RATR+NV
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRSMAVIFIEQRPVTRYETRDVDGAQKEVAVQSFKEEKKIISLATIQSPLGSQFRITGLN  418
            GRSMAVIFIEQRP T Y  + V+G +K+V+VQ+FKE+KKIISLATIQSPLGSQFRITGLN
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  419  GQGESSElalllragglaaPMYFAEERTIGPSLGAENIVKGIESTWWAMVFVSLFIIAIY  478
            GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI KG++++ W+M+FVSLFI+AIY
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  479  RFFGVLATIALAFNLVLLVGLMSVIGATLTLPGIAGIVLTLGMAVDANVLIYSRIREELA  538
            RFFG++AT+ALAFN+V+L++LMS++GATLTLPGIAGIVLT+GMAVDANVLI+SRIREE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  539  NGLSVQRAIHEGFDRAYTAIVDSNLTTLLVGGILFALGTGPIKGFAVTMSLGIITSMFTA  598
            NG++VQRAI EGFDRAYTAI+D+NLTTLLVGGILFA+GTGP+KGFAVTMSLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  599  IMFTRGLVNLIFGGRNFKKLWI  620
            IM TR++VNLI+GGR+FKKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

47) secD in NC_009434


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  755 bits (2856),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 450/574 (79%), Positives = 533/574 (93%), Gaps = 0/574 (0%)

Query  2    ADLERISQALEEGGIAVKSASLDEQGRGGLVRLERQDDQLPAKDIVRRTLGDAYVVALNL  61
            AD++R ++AL ++GI+VK++SL E+G+GGL+RL +Q+DQLPAKD+VR++LGD YVVALNL
Sbjct  49   ADVDRAAKALTDAGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNL  108

Query  62   APTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERVRY  121
            A TTP+WLR++GA+PMKLGLDLSGGVHFLLEVDM+KAI++RL+V EGEVK+LLRKE+VRY
Sbjct  109  ARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY  168

Query  122  RSLPNLKDAVQLGFADQETLSAAQSLIRKNFTDFELTTSERNGQFVLRLTLTEAKLAEIR  181
            RSLP+L + +QLGF+D+     A++L+RK FTDFE+T +E NG  VLR++LT AKLAEIR
Sbjct  169  RSLPQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIR  228

Query  182  EYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL  241
            EYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL
Sbjct  229  EYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL  288

Query  242  AAESDAPRASTETFEFREEGRPPVQLERTLIITGDQVTDAQASYDENGRPQVNIRLDGHG  301
            +A +D ++++TE FEFRE GRP+  +ER LIITGDQVTDA+AS+DE+GRPQVNI LDGHG
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  302  GDLMNRATRSNVGRSMAVIFIEQRPLTRYVRQMVDGVEQEVRVETFQEEKKIISLATIQS  361
            G+LM+RATRSNVGRSMAVIFIEQRP T Y RQMV+GVE++V V+TF+E+KKIISLATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  362  PLGSQFRITGLNGQGESSElalllragglaaPMYFAEERTIGPSLGAENIKLGVQAAMWG  421
            PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGA+NI  GV+A++WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  422  FLFVAIFMVLIYKFFGVLATIALLFNMVALTALMSMLNATLTLPGIAGIVLTMGMAVDAN  481
             LFV++F++ IY+FFG++AT+AL FNMV L ALMS+L ATLTLPGIAGIVLTMGMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  482  VLIFSRIREEIANGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPIKGFAVT  541
            VLIFSRIREEIANGM++QRAI EGFDRA++AILD+NLTTLLVGGILFAMGTGP+KGFAVT
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  542  LSIGILTSMFTAIIVTRGMVNLIYGGRDLKKLWI  575
            +S+GI+TSMFTAI+VTR+MVNLIYGGRD+KKLWI
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

48) Marme_1553 in NC_015276


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  579 bits (2185),  Expect = 2e-166, Method: Compositional matrix adjust.
 Identities = 375/622 (61%), Positives = 489/622 (79%), Gaps = 5/622 (0%)

Query  1    MLNKYPLWKYLLILAVLVFGVVYALPNLYPDDPALQISTQKATSTVDERTLKTARNALDK  60
            MLNKYPLWKY+LILAVLV G +Y+ PNLYPDD+A+QIS   ++  V +  +  A +AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIELKAAELTSAG--GTLRFDNGEDQLAAKPVIAAALGDGYVTALNLVPTTPDWLASLG  118
            AGI +KA+ L+  G  G LR+ + EDQL+AK V+  ALGD+YV ALNL  TTP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPAKLGLDLRGGVHFLLEVDTPAALKQRLEVAGSEMKAALRKERIRYRSVEIKDGVMSI  178
            A P KLGLDL GGVHFLLEVD   A+  RL V  +E+KA LRKE++RYRS+   + V+ +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  RFLKDSDRDLAESLLKDDFGDYLYRTVEDGKSFFLTIGFSEAEQKEIEAYALEQNLTTLR  238
             F  D++R+ A +L++  F D+     E      L ++++ A   EI  Y++ QNLTT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVAEPLVQRQGSNRIVVELPGVQDTAAAKRIIGATANLEFRLEAGLDANASDTE  298
            NRVNELGVAEPLVQRQG+NRIVVELPGVQDTA AKRI+G TANLEFRL AG D + + TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  TLTFRNGSGRTAQLEKDIIITGDSVSDANSSFDENGRPQVNISLDSKGGKQMAKVTRSAV  358
             + FR+G+  +A +E+++IITGD V+DA++SFDE+GRPQVNI+LD+ GG  M++ TRS V
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRNMAVVFIEHKSRSRFVEQ-EDGSLKEVR-RSYSE-KGIISLATIQTTLGNSFRITGLD  415
            GR+MAV+FIE+++ + +  Q  +G  K+V  +++ E K IISLATIQ+ LG+ FRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  416  SPRESSElalllragalaaPIYFVEERTIGPSLGAENIKLGVTSAQIGMLVVMLFMLIYY  475
            +  ESSELALLLRAG+LAAP+YF EERTIGPSLGA+NI  GV ++  GML V LF++  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  476  KVFGVFANVSLILNIVLLMAFMSLMSATLTLPGIAGIVLTMGMAVDANVLIFSRIKEELA  535
            + FG++A V+L +N+V+L+A+MSL++ATLTLPGIAGIVLTMGMAVDANVLIFSRI+EE+A
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  536  NGLPSQQAIHSGFNRAFTTIFDANITTLLVAVILFAVGTGPVKGFAVTLSLGILTSMFTA  595
            NG+  Q+AI  GF+RA+T+I+DAN+TTLLV+ ILFA+GTGPVKGFAVT+SLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  596  IVVTRAQVNLVYGGRKNKRLYI  617
            I+VTRA VNL+YGGR  K+L I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

49) secD in NC_007963


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  564 bits (2131),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 358/622 (58%), Positives = 500/622 (81%), Gaps = 6/622 (0%)

Query  1    MLNRYPLWKYllilvvllvgliYALPNLYPADPAVQISSTASGAALDQERLDRLTQALED  60
            MLN+YPLWKY+LIL VL+VG+IY+ PNLYP D+A+QIS+++++  + Q  +DR ++AL D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   KDIAIKQSEL--DGNSALIRLERAGQQVAAREIIDERLGDAYTVALNLADATPGWLQALS  118
             +I++K S L  +G+++L+RL +  +Q++A++++   LGD Y VALNLA +TP WL+ ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  ATPMKLGLDLQGGVHFLLEVDMDAAVEQRLEANASAVRDLLRDERIRYRDTSIDGRAITF  178
            ATPMKLGLDL GGVHFLLEVDMD A++ RL    + V+ LLR E++RYR  +  G  I +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  QFANADDRNAARGLITDQFPDFEYSTPDTERGASLTMTFTDQAVQDLQDYAVNQNLTTIR  238
             F++  +R+ AR+L+   F DFE + ++ +  + L M++T   + ++++Y+++QNLTT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVSEPLVQRQGPSRIVVELPGVQDTAAAKRIVGATANLEFRLEARPDTPEREIE  298
            NRVNELGV+EPLVQRQG++RIVVELPGVQDTA AKRI+G TANLEFRL A PD +    E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  TLPFRNDEGRSADLMRDIIVTGDHVSSASRSFDENNRPQVNINLDGTGGSMMSRATRANI  358
             + FR++   +A + R++I+TGD+V+ A  SFDE+ RPQVNINLDG GG +MSRATR+N+
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRNMAVVFIEHKTRTRTVMEDGEEVEKR---EAYTE-RGIISLATIQSTLGNRFRITGLE  414
            GR+MAV+FIE++  T    +  + VEK    +++ E + IISLATIQS LG++FRITGL+
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  415  SASEagdlalllrsgslaaPIYFAQERTIGPSLGAQNIAQGIMSVEVGLLLVVLFMLARY  474
            + +E+++LALLLR+G+LAAP+YFA+ERTIGPSLGA+NI++G+ +   G+L+V LF++A Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  475  KAFgvvanvslglnlvllvaaMSLLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELR  534
            + FG++A V+L++N+V+L+A MSLLGATLTLPGIAGIVLT+GMAVDANVLIF RIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  535  AKMPVQQAIHTGFERAFTSIVDANITTLLVAVILFSIGTGPVKGFAVTLSLGILTSMFTA  594
              M VQ+AI  GF+RA+T+I+DAN+TTLLV+ ILF++GTGPVKGFAVT+SLGI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  595  IMVSRAMINLTIGGRPLKKIWI  616
            IMV+RAM+NL  GGR +KK+WI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

50) HP15_1481 in NC_017506


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  560 bits (2115),  Expect = 7e-161, Method: Compositional matrix adjust.
 Identities = 345/627 (56%), Positives = 487/627 (78%), Gaps = 15/627 (2%)

Query  1    MLNKYPLWKNLVILVALVIGFIYALPNLFPDDYAIQITGARSSTEVNAGVLDRAVGVLES  60
            MLNKYPLWK ++IL  LV+GFIY+ PNL+PDD AIQI+GA ++ +V  + +DRA   L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   RGIEVKSSTLQD--RDALIRLTNSEDQLQARPLVQAALGNEYLVALNMAASTPGWLKSLG  118
             GI VK+S+L +  +++L+RL++ EDQL A+ +V+ ALG++Y+VALN+A +TP WL+++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRELREERIRYRG----GDVQDN  174
            A PMKLGLDL GGVHFLLEVDM+ A+  RL    G++K  LR E++RYR+    G+V   
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV---  177

Query  175  REIVLSFRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFLLVLTLSEAEVTAIQDYALEQN  234
              I L+F D+A R +A  +VR  + +F +      +  +L ++L+ A ++ I++Y++ QN
Sbjct  178  --IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  235  LTTIRNRVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLGATANLEFRMEARQDAP  294
            LTT+RNRVNELGVAEPLVQ+QGA+RI+VELPGVQDTA+AKR+LG TANLEFR+ A  D +
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  295  SSETEEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDENGQPQVNITMDSVGGDLMNRA  354
             + TE F FR+  + +A +E+ +I TG++V++A+ +FDE+G+PQVNI +D+ GG+LM+RA
Sbjct  296  KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRA  355

Query  355  TRNAIGRRMAVLFIEYRTETE--TRMVDGEPQEVENRVV--EKGIISLATVQSALGSSFR  410
            TR+ +GR MAV+FIE R  T    +MV+G  ++V  +    +K IISLAT+QS+LGS FR
Sbjct  356  TRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFR  415

Query  411  ITGLDSIPEaaelalllragalaaPMYFVQERTIGPSLGQKNIDAGMMSVALGFGLVLLY  470
            ITGL++  E++ELALLLRAG+LAAPMYF +ERTIGPSLG  NI  G+ +   G  +V L+
Sbjct  416  ITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLF  475

Query  471  MLVYYRGFGVVANIALTLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERI  530
            ++  YR FG++A +AL++N+++L+A MS+L+ATLTLPGIAGIVLT+GMAVDANVLIF RI
Sbjct  476  IMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRI  535

Query  531  KEELKSGVPPQTAINSGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILT  590
            +EE+ +G+  Q AI+ G+ RA+ +I+DAN+TTLLV+ ILFAMG+GPVKGFAVT+ +GI+T
Sbjct  536  REEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFT  595

Query  591  SMFSGLMVSRSIVNIVYGGRRVEKLSI  617
            SMF+++MV+R++VN++YGGR   KL I
Sbjct  596  SMFTAIMVTRAMVNLIYGGRDFKKLWI  622

51) secD in NC_018268


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  559 bits (2112),  Expect = 1e-160, Method: Compositional matrix adjust.
 Identities = 347/628 (56%), Positives = 482/628 (77%), Gaps = 13/628 (2%)

Query  1    MLNKYPLWKNLIILVALAIGFVYALPNLFPDDFAVQVTGARSSTEVDALVLERAVQALES  60
            MLNKYPLWK ++IL  L +GF+Y+ PNL+PDD A+Q++GA ++ +V    ++RA +AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   QGIEVKSSSLQD--RDALIRVTSGEDQLQARPAVQAVLGNDYLVALNMAASTPGWLSSLG  118
             GI VK+SSL +  +++L+R++  EDQL A+  V+  LG+DY+VALN+A +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPMKLGLDLRGGIHFLLEVDMETAVSQRLEALAGQIKRELREERIRYRG-GELEGDLKD  177
            A PMKLGLDL GG+HFLLEVDM+ A+  RL    G++K  LR E++RYR+  +L      
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL------  174

Query  178  GQEIILSFRDDESRAEAFTLIRRQYLQFLMDERTRGDERLIALTLSEAEVRSIQEYALEQ  237
            G+ I L+F DD  R +A +L+R+ + +F +      +  ++ ++L+ A +  I+EY++ Q
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  238  NLTTIRNRVNELGVAEPLVQRQGTSRIIVELPGVQDTAQAKRVLGATANLEFRMEARPDT  297
            NLTT+RNRVNELGVAEPLVQRQG++RI+VELPGVQDTA+AKR+LG TANLEFR+ A PD 
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  298  PAGSVETFGFRDTPQRTARLERELIATGNNVANAQQQFDENGQPQVSITMDSVGGDLMNR  357
            + G+ E F FR+  + +A +ER LI TG++V++A+  FDE+G+PQV+I +D+ GG+LM+R
Sbjct  295  SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSR  354

Query  358  ATRNAVGRRMAVLFIEFRTETE--DRMVDG--EVVTEEKRVVDKGIISLATVQSALGASF  413
            ATR+ VGR MAV+FIE R  T    +MV+G    V  +    DK IISLAT+QS+LG+ F
Sbjct  355  ATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQF  414

Query  414  RITGLDSIPEASElalllragalaaPMYFVQERTIGPSLGQKNIDAGMMSVLLGFVLVLI  473
            RITGL++  E+SELALLLRAG+LAAPMYF +ERTIGPSLG  NI  G+ + L G ++V +
Sbjct  415  RITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSL  474

Query  474  YMALYYRGFGLIANVSLTLNLMLLIACMSILSATLTLPGIAGIVLTVGMAVDANVLIFER  533
            ++   YR FGLIA V+L++N+++L+A MS+L+ATLTLPGIAGIVLT+GMAVDANVLIF R
Sbjct  475  FIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSR  534

Query  534  IREELKAGTAPQLAINAGYSRAFVSIFDANITTLLVALILFAMGSGPVKGFAITLSLGIM  593
            IREE+  G + Q AI+ G+ RA+ +I+DAN+TTLLV+ ILFAMG+GPVKGFA+T+SLGI 
Sbjct  535  IREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIF  594

Query  594  TSMFSGLVVSRSIVNVVYGGRRVEKLSI  621
            TSMF++++V+R++VN++YGGR   KL I
Sbjct  595  TSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

52) secD in NC_014532


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  554 bits (2092),  Expect = 4e-159, Method: Compositional matrix adjust.
 Identities = 359/623 (58%), Positives = 499/623 (81%), Gaps = 8/623 (1%)

Query  1    MLNRYPLWKYllillvlvvgliYALPNLFPEDPAVQISSDRGEFTLDERRLDRLEDSLDE  60
            MLN+YPLWKY+LIL VLVVG+IY+ PNL+P+D+A+QIS+    + + +  +DR   +L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIATQA--IERQPQSVLIRLRHADDQIRARDLLGDSLGEDYVVALNQAESTPAWLESLA  118
            AGI+ +A  +  + ++ L+RL   +DQ+ A+D++  +LG+DYVVALN A +TP WL +++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  ASPMTLGLDLRGGVHFLLEVDMEAAITQRLESDASAMRNLLRDERLRYRN-TELGERSIS  177
            A+PM LGLDL GGVHFLLEVDM+ AI  RL    + ++ LLR E++RYR+  +LG+  I 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  MDFMNAEDRDQARQLIAPEYPDFDYSNVEKTRGAGLEMTLTDTAVNEIQDYAVNQNLTTL  237
            ++F +  +R+QAR L+   + DF+ +  E    + L M+LT + + EI++Y+++QNLTT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVSEPLVQRQGPNRIVVELPGVQDTAAAKRIIGATANLEFRLEARPDTPESET  297
            RNRVNELGV+EPLVQRQG+NRIVVELPGVQDTA AKRI+G TANLEFRL A PD + + T
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTT  299

Query  298  ETFPFRDNEARTATLMRDVIITGDRVSNANRSFDENGRPQVNISLDGTGGTLMNRATRTN  357
            E F FR+    +A++ R++IITGD+V++A+ SFDE+GRPQVNI+LDG GG LM+RATR+N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  358  IGRNMAVLFIEHNSR---ERTVMKDGEP-TTVRTQDTERGIISLATIQSALGNSFRITGL  413
            +GR+MAV+FIE+ +     R ++++ E    V+T   ++ IISLATIQS+LG+ FRITGL
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGL  419

Query  414  ESPTEaadlalllrsgslaaPMYFAQERTIGPSLGAKNVERGIlsvqvglllvvlfmlvr  473
            ++  E+++LALLLR+G+LAAPMYFA+ERTIGPSLGA N+ +G+ +   G+L+V LF++  
Sbjct  420  NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI  479

Query  474  yrvFGVFANLALGFNLTLLVAVMSMLGATLTLPGIAGIVLTLGMAVDANVLIFERIREEL  533
            YR FG++A +AL+FN+ +L+A+MS+LGATLTLPGIAGIVLT+GMAVDANVLIF RIREE+
Sbjct  480  YRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  534  RNGLSVQQAIHAGYERAFSSIVDANITTLLVALILFSIGTGPVKGFAVTLSLGILTSLFT  593
             NG++VQ+AI  G++RA+++I+DAN+TTLLV+ ILF++GTGPVKGFAVT+SLGI+TS+FT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  594  ALMVTRAMVNLCYGGKPVKKLWI  616
            A+MVTRAMVNL YGG+  KKLWI
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

53) secD in NC_007645


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  554 bits (2090),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/623 (57%), Positives = 483/623 (78%), Gaps = 10/623 (1%)

Query  1    MLNKYPLWKNLLVVIVLMMGFIYALPNLYPDDYALQISGSRGSIEVDESVLKKAKDALDE  60
            MLNKYPLWK +L++ VL++GFIY+ PNLYPDD A+QISG+  +++V ++ + +A  AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIAYGEAKVGE--KNIIIRFADNDTQLDAQPHVKSALGNDYVVALNLAPTTPAWLSNLG  118
            AGI+   + ++E  K  ++R++ ++ QL A+  V+ ALG+DYVVALNLA TTP WL N+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AAPMKLGLDLRGGVHFLMEVDLAKAVATTMEITQGDIKTKLREEGLRYKSVDILTPRQIS  178
            A+PMKLGLDL GGVHFL+EVD+ KA+ + + + +G++K+ LR E +RY+S+  L    I 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  179  VGFRDEDDRDSALSLARREFDDFLAESAEESGLFMVKLTLLESRAKEIEDYAISQNLSTL  238
            +GF D+ +R+ A +L R+ F DF   +AE +G+ +++++L  ++  EI +Y+I QNL+T+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  239  RNRVNELGVAEPLVQRQGRGRIVVELPGVQDTAEAKRILGSTANLEFRLEARPDASAGSI  298
            RNRVNELGVAEPLVQRQG  RIVVELPGVQDTAEAKRILG TANLEFRL A PD S G+ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTT  299

Query  299  EKFEFRSEPR-TASLERDIIITGGSVANAQQSFDENGRPEVNIKLDSLGGNKMFHVTKDA  357
            E FEFR   R +A++ER++IITG+ V++A+ SFDE+GRP+VNI+LD+ GG+ M + T+  
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  358  VQRNMGVLFVE------YKEEVDAKSTNGQPKKRRYVEKKIISLATIQSPLGNSFRITGL  411
            V R+M+V+F+E      Y  ++     ++ P +    +KKIISLATIQSPLG+ FRITGL
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGL  419

Query  412  DSVFEAKElalllrsgalaaPIYFVEERTVGPSLGLENIKDGATSVAIGFVLVMLFMIVY  471
            ++  E+ ELALLLR+G+LAAP+YF EERT+GPSLG +NI  G  +   G ++V LF++  
Sbjct  420  NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI  479

Query  472  YRVFGIVANIALAANVFILIAVMSLMSATLTLPGIAGIVLTVGMAVDANVLIYERIREEL  531
            YR FG++A +ALA N+ +L+A+MSL++ATLTLPGIAGIVLT+GMAVDANVLI+ RIREE+
Sbjct  480  YRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  532  RNGLPPQSAIHAGYDRAFVSIFDANVTTLIAALILFAIGTGPVKGFAVTLSIGILTSMFT  591
             NG+  Q AI  G+DRA+ +I+DAN+TTL+ + ILFA+GTGPVKGFAVT+S+GI+TSMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  592  AITVTRAVVNMIYGGRNVGSLSI  614
            AI VTRA+VN+IYGGR+   L I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

54) secD in NC_008740


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  550 bits (2075),  Expect = 1e-157, Method: Compositional matrix adjust.
 Identities = 347/624 (56%), Positives = 488/624 (79%), Gaps = 9/624 (1%)

Query  1    MLNKYPLWKNLVIVFALVIGFIYALPNFFPDDYAIQITGARGSTEVEQRVLDRALAKLEQ  60
            MLNKYPLWK ++I+  LV+GFIY+ PN++PDD AIQI+GA  + +V Q  +DRA   L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   EGIEVKSSLLEE--RDALIRLTSSDEQLRARPAVQAALGNEYLVALNMAPSTPGWLRSLG  118
             GI VK+S L E  +++L+RL+  ++QL A+  V+ ALG++Y+VALN+A +TP WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPMKLGLDLRGGVHFLLEVDMETALNQRLEALSGQIKRELREERIRYRGGDIEDQARIV  178
            A PMKLGLDL GGVHFLLEVDM+ A++ RL    G++K  LR E++RYR+  + + + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRS--LPQLGNVI  178

Query  179  -LSFRDEAARSEAFELVRDQYNeflldettegeeflltltlseAEVRNIQEYALEQNLTT  237
             L+F D+A R +A  LVR  + +F +  +      +L ++L+ A + +I+EY++ QNLTT
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  238  IRNRVNELGVAEPLVQRQGADRIIVELPGVQDTAQAKRVLGATANLEFRMEARQDAPSAE  297
            +RNRVNELGVAEPLVQRQGA+RI+VELPGVQDTA+AKR+LG TANLEFR+ A  D + + 
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  298  TEQFPFRDNPQRTARLERDVIATGNNVANAQQAFDENGQPQVNITMDSVGGDLMNRATRN  357
            TE F FR+  + +A +ER++I TG++V++A+ +FDE+G+PQVNI +D+ GG+LM+RATR+
Sbjct  299  TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRS  358

Query  358  SIGRRMAVLFIEYRTETE-TREVNGEI---VETENRVVEKGIISLATVQSALGSSFRITG  413
            ++GR MAV+FIE R  T  TR++   +   V  +    +K IISLAT+QS+LGS FRITG
Sbjct  359  NVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITG  418

Query  414  LDSIPEaaelalllragalaaPMYFVQERTIGPSLGQKNIDAGMMSVMLGFGLVLLYMLV  473
            L++  E++ELALLLRAG+LAAPMYF +ERTIGPSLG  NI  G+ + + G  +V L+++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  474  FYRGFGLVANVALTLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEE  533
            +YR FGL+A VAL++N+++L+A MS+L+ATLTLPGIAGIVLT+GMAVDANVLIF RI+EE
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE  538

Query  534  LKAGVPPQSAINAGYGRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTSMF  593
            +  G+  Q AI+ G++RA+ +I+DAN+TTLLV+ ILFAMG+GPVKGFAVT+ +GI+TSMF
Sbjct  539  IANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMF  598

Query  594  SGLMVSRGIVNLVYGGRRVEKLSI  617
            +++MV+R++VNL+YGGR   KL I
Sbjct  599  TAIMVTRAMVNLIYGGRDFKKLWI  622

55) secD in NC_017067


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  550 bits (2076),  Expect = 8e-158, Method: Compositional matrix adjust.
 Identities = 348/624 (56%), Positives = 488/624 (79%), Gaps = 9/624 (1%)

Query  1    MLNKYPLWKNLVIVFALVIGFIYALPNFFPDDYAIQITGARGSTEVEQRVLDRALAKLEQ  60
            MLNKYPLWK ++I+  LV+GFIY+ PN++PDD AIQI+GA  + +V Q  +DRA   L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   EGIEVKSSLLEE--RDALIRLTSSDDQLRARPAVQAALGNEYLVALNMAPSTPGWLRSLG  118
             GI VK+S L E  +++L+RL+  +DQL A+  V+ ALG++Y+VALN+A +TP WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPMKLGLDLRGGVHFLLEVDMETALNQRLEALSGQIKRELREERIRYRGGDIEDQARIV  178
            A PMKLGLDL GGVHFLLEVDM+ A++ RL    G++K  LR E++RYR+  + + + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRS--LPQLGNVI  178

Query  179  -LSFRDEAARSEAFELVRDQYNeflldettegeeflltltlseAEVRNIQEYALEQNLTT  237
             L+F D+A R +A  LVR  + +F +  +      +L ++L+ A + +I+EY++ QNLTT
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  238  IRNRVNELGVAEPLVQRQGADRIIVELPGVQDTAQAKRVLGATANLEFRMEARQDAPSAE  297
            +RNRVNELGVAEPLVQRQGA+RI+VELPGVQDTA+AKR+LG TANLEFR+ A  D + + 
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  298  TEQFPFRDNPQRTARLERDVIATGNNVANAQQAFDENGQPQVNITMDSVGGDLMNRATRN  357
            TE F FR+  + +A +ER++I TG++V++A+ +FDE+G+PQVNI +D+ GG+LM+RATR+
Sbjct  299  TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRS  358

Query  358  SIGRRMAVLFIEYRTETE-TREVNGEI---VETENRVVEKGIISLATVQSALGSSFRITG  413
            ++GR MAV+FIE R  T  TR++   +   V  +    +K IISLAT+QS+LGS FRITG
Sbjct  359  NVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITG  418

Query  414  LDSIPEaaelalllragalaaPMYFVQERTIGPSLGQKNIDAGMMSVMLGFGLVLLYMLV  473
            L++  E++ELALLLRAG+LAAPMYF +ERTIGPSLG  NI  G+ + + G  +V L+++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  474  FYRGFGLVANVALTLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEE  533
            +YR FGL+A VAL++N+++L+A MS+L+ATLTLPGIAGIVLT+GMAVDANVLIF RI+EE
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE  538

Query  534  LKAGVPPQSAINAGYGRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTSMF  593
            +  G+  Q AI+ G++RA+ +I+DAN+TTLLV+ ILFAMG+GPVKGFAVT+ +GI+TSMF
Sbjct  539  IANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMF  598

Query  594  SGLMVSRGIVNLVYGGRRVEKLSI  617
            +++MV+R++VNL+YGGR   KL I
Sbjct  599  TAIMVTRAMVNLIYGGRDFKKLWI  622

56) secD in NC_009654


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  526 bits (1986),  Expect = 1e-150, Method: Compositional matrix adjust.
 Identities = 372/625 (60%), Positives = 489/625 (79%), Gaps = 12/625 (1%)

Query  1    MLNKYPlwkyllillvlalgllYAFPNLYPDDPALQLSTQKATAVVDEQALQKAKIALTK  60
            MLNKYPLWKY+LIL VL +G++Y+ PNLYPDD+A+Q+S   ++  V +  +++A  ALT 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   ANIDLKEAELTSAG--GTLRFNSGEDQLAAKPVVAAALGDDYVTALNLVPTTPEWLSALG  118
            A I +K + L+  G  G LR++  EDQL+AK VV  ALGDDYV ALNL  TTP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPAKLGLDLRGGVHFLLEVDTPAALKQRLEVSASEMKAALRKDRVRYRSVDIEDGVLSV  178
            A P KLGLDL GGVHFLLEVD   A+  RL V  +E+KA LRK++VRYRS+   + V+ +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  RFLQQPDLATAETLLKKDFSEYRYATRQDGSDFYLDVSFTEAAKKEIESYALQQNLTTLR  238
             F ++++   A +L++K F+++  +  +  +   L +++T A   EI  Y+++QNLTT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVAEPLVQRQGSNRIVVELPGVQDTAAAKRIIGATANLEFHLEAGLEDKGADIE  298
            NRVNELGVAEPLVQRQG+NRIVVELPGVQDTA AKRI+G TANLEF+L AG +D  +  E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  TLSFRDGSGRTARLERDLIITGDSVSDASSSFDENGRPQVNINLDAKGGKQMSKVTRSAV  358
             + FR+G+  +A +ER+LIITGD V+DA +SFDE+GRPQVNINLD+ GG  MS+ TRS V
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRNMAVVFIEHKSRSRF-------VEKDGKMEEVRRSYSEKGIISLATIQTTLGNSFRIT  411
            GR+MAV+FIE+++ + +       VEKD  ++  +    +K IISLATIQ+ LG+ FRIT
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFK---EDKKIISLATIQSPLGSQFRIT  417

Query  412  GLDSPRESSElalllragalaaPIYFVEERTIGPSLGAENIKLGVSSAQIGllvvmvfml  471
            GL++  ESSELALLLRAG+LAAP+YF EERTIGPSLGA+NI  GV ++  G+L V +F++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  472  lyykvFGLFANISLALNIVLLMACMSLLSATLTLPGIAGIVLTMGMAVDANVLIFSRIKE  531
              Y+ FGL+A ++LA+N+V+L+A MSLL+ATLTLPGIAGIVLTMGMAVDANVLIFSRI+E
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  532  ELASGVSNQQAIHSGFNRAFTTIFDANITTLLVAVILFAVGTGPVKGFAVTLSLGILTSM  591
            E+A+G++ Q+AI  GF+RA+T+I+DAN+TTLLV+ ILFA+GTGPVKGFAVT+SLGI+TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  592  FTAIVVTRAQVNLVYGGRKNKKLYI  616
            FTAI+VTRA VNL+YGGR  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

57) M5M_04785 in NC_018868


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  525 bits (1979),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 363/629 (58%), Positives = 485/629 (78%), Gaps = 12/629 (1%)

Query  1    MLNRYPLWKNLLILAVIGLAFVFAMPNLYAPDPAVQISGESSAMELDQAVLDRATKALEE  60
            MLN+YPLWK +LILAV+ ++F+++ PNLY+ D+A+QISG S+A+++ QA +DRA+KAL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIEHFGETV--NPKNALIRLHSSDDQLPAKRTIQRALGDSFVVALNMASTTPDWLRSLG  118
            AGI   + ++  N K +L+RL   +DQLPAK  +++ALGD +VVALN+A TTP+WLR++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPMKLGLDLSGGVHFLMEVDTASAIAKRQESSLTEFKSKLREERIRYVSVEFTEAGAIE  178
            A PMKLGLDLSGGVHFL+EVD   AI  R      E K+ LR E++RY S+    +  I+
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLP-QLGNVIQ  179

Query  179  GVFRSAEDRDAAAAIFRKEFQDLTRESVDNEDGTFTVKATFSETAIREIENYAVQQNLTT  238
              F    +R+ A A+ RK F D+   + +  +G   ++ +++ + + EI +Y+++QNLTT
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAEL-NGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  239  LRNRVNELGVSEPIVQRQGRNRIVVELPGVQDTAEAKRVIGKTANLEFRLEAKPSDLVTN  298
            +RNRVNELGV+EP+VQRQG NRIVVELPGVQDTAEAKR++GKTANLEFRL A P D    
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  299  KESFEFRSELDQRRFGNAELERALIISGDHVSGAQSSFDPETNQPQVNINLDSAGGTKMH  358
             E FEFR   + R    A +ER+LII+GD+V++A++SFD E  +PQVNINLD+ GG  M 
Sbjct  299  TEMFEFRE--GGRP--AAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGGELMS  353

Query  359  RATRSNVGRRMGVLFIEYKTRLD---RTTNAAGEEVVTPRQIVEKKVISLATIQSALGVQ  415
            RATRSNVGR M+V+FIE +       +  N+   +V       +KK+ISLATIQS+LG Q
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  416  FRITGLDNVaeaselalllrsgalaaPMYFVEERTIGPSLGAENIAVGVLSVQIAFALVL  475
            FRITGL+  +E+SELALLLR+G+LAAPMYF EERTIGPSLGA+NI+ GV +   +  +V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  476  IFMLAYYKVFGiaanialavnvvllaaCMSMLGATLTLPGIAGIVLTVGMAVDANVLIFS  535
            +F++A Y+ FG+ A +ALA N+V+L A MS+LGATLTLPGIAGIVLT+GMAVDANVLIFS
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFS  533

Query  536  RIKEELANGLPTQSAINAGYERAFTTILDANITTLIVAVILYAIGTGPVKGFAVTLSLGI  595
            RI+EE+ANG+  Q AI+ G++RA+T+ILDAN+TTL+V+ IL+A+GTGPVKGFAVT+SLGI
Sbjct  534  RIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGI  593

Query  596  LTSMFTAIMVSRMIANFIYGGRNVKKVWI  624
            +TSMFTAIMV+R + N+IYGGR+ KK+WI
Sbjct  594  FTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

58) Mar181_1425 in NC_015559


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  521 bits (1964),  Expect = 5e-149, Method: Compositional matrix adjust.
 Identities = 368/625 (59%), Positives = 487/625 (78%), Gaps = 12/625 (1%)

Query  1    MLNKYPlwkyllillvlalgllYAFPNLYPDDPALQLSTQKATSVVDQQTLQKAELALSK  60
            MLNKYPLWKY+LIL VL +G++Y+ PNLYPDD+A+Q+S   ++  V Q  +++A  AL+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   ANIELKEAELTSAG--GTLRFNNGEDQLAAKPVVAAALGEDYVTALNLVPTTPEWLASLG  118
            A I +K + L+  G  G LR+++ EDQL+AK VV  ALG+DYV ALNL  TTP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPAKLGLDLRGGVHFLLEVDTPAALKQRLEVSSSEMKAALRKDRVRYRSVSIADGVLSI  178
            A P KLGLDL GGVHFLLEVD   A+  RL V  +E+KA LRK++VRYRS++  + V+ +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  RFLKESDLTLAEDLLKGEFADYRYDTRQEDTDYFLDVSFTEAETKEIESYALQQNLTTLR  238
             F  +++   A  L++  F+D+     + +    L +++T A   EI  Y+++QNLTT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVAEPLVQRQGSNRIVVELPGVQDTAAAKRIIGATANLEFHLEAGLDDQGADVE  298
            NRVNELGVAEPLVQRQG+NRIVVELPGVQDTA AKRI+G TANLEF+L AG DD  +  E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  TLSFRDGSGRTARLERDIIITGDSVADASSSFDENGQPQVNISLDSKGGKQMTKVTRSAV  358
             + FR+G+  +A +ER++IITGD V+DA +SFDE+G+PQVNI+LD+ GG  M++ TRS V
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  GRNMAVVFIEHKSRSRF-------VEKDGKMEEVRRSYSEKSIISLATIQTTLGNSFRIT  411
            GR+MAV+FIE+++ + +       VEKD  ++  +    +K IISLATIQ+ LG+ FRIT
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFK---EDKKIISLATIQSPLGSQFRIT  417

Query  412  GLDSPRESSElalllragalaaPIYFVEERTIGPSLGAENIQLGVTSAQIGllvvmlfml  471
            GL++  ESSELALLLRAG+LAAP+YF EERTIGPSLGA+NI  GV ++  G+L V LF++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  472  vyykvFGIFANVSLALNIVLLMACMSLMSATLTLPGIAGIVLTMGMAVDANVLIFSRIKE  531
              Y+ FG++A V+LA+N+V+L+A MSL++ATLTLPGIAGIVLTMGMAVDANVLIFSRI+E
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  532  ELANGVPSQQAIHSGFNRAFTTIFDANITTLLVAVILFAVGTGPVKGFAVTLSLGILTSM  591
            E+ANG+  Q+AI  GF+RA+T+I+DAN+TTLLV+ ILFA+GTGPVKGFAVT+SLGI+TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  592  FTAIVVTRSQVNLVYGGRKNKKLYI  616
            FTAI+VTR+ VNL+YGGR  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

59) TOL_1313 in NC_020888


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  514 bits (1939),  Expect = 5e-147, Method: Compositional matrix adjust.
 Identities = 352/622 (57%), Positives = 484/622 (78%), Gaps = 7/622 (1%)

Query  1    MLNKYPLWKNllivvvlvlsviYAAPNLYPPDPAIQITPSRSGAELTEETLSRVHKSLDD  60
            MLNKYPLWK +LI+ VLV++ IY+APNLYP D+AIQI+ + ++ ++T+  + R  K+L D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIEFFGE--EQNGQTALLRLRSSDAQLPAKSAVQRVIGDEFIVALNLAPTTPQWLIDLG  118
            AGI   +    +NG+ +LLRL   + QLPAK  V++ +GD+++VALNLA TTP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AGPMTLGLDLSGGVHFLMEVDMDEYVTGKINNYRQELRTRLREENIKYRRVVVEDKTLRL  178
            A PM LGLDLSGGVHFL+EVDMD  + ++++ Y  E+++ LR E+++YR +   ++ ++L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  SFDAAEVRGDARNFIAKSYREFVITDEQEGQYFDLLLTINEQQIKSFEDYALKQNLTTIR  238
            +F+    R +AR ++ K++ +F IT  +      L +++   ++  + +Y++KQNLTT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  239  NRVNELGVAEPLVQRQGRNRIVVELPGVQDTAEAKKILGKAANLEFRLEALPGVSRFQTE  298
            NRVNELGVAEPLVQRQG NRIVVELPGVQDTAEAK+ILGK+ANLEFRL A P+ S+  TE
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  299  EYPFRADEYRTAKLEKTVITNGDSVTNAKPSFDENGMPQVNIDLDAKGGAMMTQVTAKAI  358
             + FR +   +A +E+ +I  GD VT+AK+SFDE+G PQVNI+LD+ GG +M++ T   +
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  359  QRRMAVLFVERKPKTTY--ELVDGVEQPKTIQI--TEKSIISLATIQSTLGNSFRITg-l  413
             R MAV+F+E++P TTY  ++V+GVE+   +Q    +K IISLATIQS LG+ FRITG  
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  414  esgeaselslllragalaaPMYFVEERTVGPSLGKENIQMGVQSVVIGLGLVLLAMTVFY  473
              GE+SEL+LLLRAG+LAAPMYF EERT+GPSLG +NI  GV++ + G+ +V L +  +Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  474  RVFGivaniallanivvlvalMSIIGATLTLPGIAGIVLTVGMAVDANVLIFARIREEMK  533
            R FG++A +AL  N+V+L+ALMS++GATLTLPGIAGIVLT+GMAVDANVLIF+RIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  534  NGRSPQQAIHEGYDRAFLTIFDANLTTLIVAVILFAVGTGPVKGFAVTLSFGILTSMFTA  593
            NG + Q+AI EG+DRA+ +I+DANLTTL+V+ ILFA+GTGPVKGFAVT+S+GI+TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  594  IVVTRAIVNLIYGGRRVESLSI  615
            I+VTRA+VNLIYGGR    L I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

60) ABK1_3219 in NC_017162


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

61) secD in NC_011586


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

62) secD in NC_011595


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

63) secD in NC_010611


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

64) secD in NC_009085


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

65) secD in NC_010410


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

66) BJAB07104_03255 in NC_021726


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

67) BJAB0715_03316 in NC_021733


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

68) BJAB0868_03210 in NC_021729


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

69) secD in NC_020547


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

70) ABTJ_00537 in NC_017847


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

71) ABZJ_03351 in NC_017171


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

72) secD in NC_010400


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

73) secD in NC_017387


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

74) M3Q_3400 in NC_018706


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  505 bits (1903),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 327/635 (52%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKAI  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +      ++L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYQSLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F ++  ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   +Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

75) secD in NC_005966


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  504 bits (1901),  Expect = 5e-144, Method: Compositional matrix adjust.
 Identities = 330/635 (52%), Positives = 476/635 (75%), Gaps = 23/635 (3%)

Query  2    RYPAWKYvliivvliiSTLYALPSLYPDEPAVQISGAKAGTQIDQSMVQKAEQILKTANI  61
            +YP WKYVLI+ VL+++ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   TSHDNSFANNA--ALLRLNSSEDQLKAQDVLRRDLGDNYVVALNLAPTTPEWLQKIGAKP  119
                +S+A+N+  +LLRL+  EDQL A+DV+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMNKAIAQRMETSVSDIRRQFRDNNIKFNSLSLNNNAIVLQFA  179
            MKLGLDL GGVHFLLEVDM+KAI  R+    ++++  +R +++++ SL+   N I L F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  NNADRDTAMDFLRRNGNEYTQQAVATATGASLRLSYTDARRQEIESYAVNQNLTTLRNRI  239
            ++A+R+ A  ++R+   ++   +      + LR++ T A+  EI  Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVADQNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL A+ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTELFAYESLDSGRQ-LLLNRNRILTGERVQNASSGFSQDTGGAEVNITLDS  358
                     TE+F +   ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMADATRNAVGKRMAVLFIENKQRVSYVTDPATGAQTEVRT-PFTES-VIINAATV  416
             GG LM+ ATR+ VG+ MAV+FIE++   +Y  +   G + +V    F E   II+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSQFRITGLDSPQEaaelalmlragalaaPMYFVEERVVGPSLGQENIDKGILSTE  476
            Q+ LGSQFRITGL++  E++ELAL+LRAG+LAAPMYF EER +GPSLG +NI KG+ ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  VGFILVAIWMIVFFRLFGLIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVD  536
             G ++V++ ++ ++R+FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEIKWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREEI  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIVCSMFTAITVTRAIVQLIYGKRRNLKKL  631
            VT+ +GI  SMFTAI VTRA+V+LIYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

76) secD in NC_014147


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  502 bits (1895),  Expect = 2e-143, Method: Compositional matrix adjust.
 Identities = 336/625 (54%), Positives = 481/625 (77%), Gaps = 12/625 (1%)

Query  2    HYPAWKYILIVVVLFISGIYALPNLYPDEPAVQITGASAGTQLTQDVLTQAEGLLTQAGL  61
             YP WKY+LI+ VL ++ IY+ PNLYPD++A+QI+GAS++ Q+TQ  + +A   LT+AG+
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   NHHNGRFENNS--ALLRLSNAEDQLKAQEVLRRDLGEQYVVALNLAQTTPEWLRNLGAAP  119
                + + +N+  +LLRLS+ EDQL A++V+R+ LG++YVVALNLA+TTP+WLRN+GA+P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVRFVLEVDMAKALEQRLATASQDVRRTLRGEQIPVQSLRITDNGMVLTFI  179
            MKLGLDL GGV+F+LEVDM KA++ RL     +V+  LR E++  +SL   +N + L F 
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  NTDDRGRAQSILQNQVGADFALRPFADTEGAALELTYTDAKIQEINEYAVGQNLTTLRNR  239
            +  +R +A++++++   +DF + P      + L ++ T AK+ EI EY++ QNLTT+RNR
Sbjct  184  DDAEREQARALVRKTF-TDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNR  242

Query  240  INELGVAEALVQSQGTNRIVVELPGVQDTAEAKRVLGRTANLEFRMVSEHDMNYAGGIPP  299
            +NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFR+ +  D       + 
Sbjct  243  VNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD------DSK  296

Query  300  AGTEAFAFGSLDGQPMLLERQAIITGERVQGAQSGLDENGRPQVNITLDTAGGRLMQNAT  359
            + TE F F   +  +  +ER  IITG++V +A++++DE+GRPQVNI LD  GG LM  AT
Sbjct  297  GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRAT  356

Query  360  RTAVGKQMAVLFIENKQKVSFQEDSSTGELVEVRT-PYTESR-IINRATIQAVLGSSFVI  417
            R+ VG+ MAV+FIE++   ++  +   G   +V    + E + II+ ATIQ+ LGS F I
Sbjct  357  RSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRI  416

Query  418  TGldsdaeagelalllrsgalaaPMYFVEERTIGPSLGQDNIDKGLFSTQVGYLLVFLWM  477
            TGL++++E++ELALLLR+G+LAAPMYF EERTIGPSLG DNI KG+ ++  G L+V L +
Sbjct  417  TGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFI  476

Query  478  IVFYRAFGVIANIALAFNVIIMVAIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIR  537
            + +YR FG+IA +ALAFN+++++A+MS+LG++LTLPGIAGIVLT+GMAVDANVLIF RIR
Sbjct  477  MAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  538  EELANGTRAKSAIVAGFDRAFSSIFDANITTLLIAFILFAIGTGPIKGFAITLAIGIISS  597
            EE+ANG   + AI  GFDRA+++I+DAN+TTLL++ ILFA+GTGP+KGFA+T+++GI++S
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  598  LFTAILVTRAMIQIWYGHRKNLTKL  622
            +FTAI+VTRAM+++ YG R ++ KL
Sbjct  597  MFTAIMVTRAMVNLIYGGR-DFKKL  620

77) secD in NC_016603


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  502 bits (1892),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 326/635 (52%), Positives = 474/635 (75%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlviSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVKKAEQILKTANI  61
            +YP WKY+LIL VLV++ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V +A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDEYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKIKFNSLALTNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKA+  R+     +++  +R +K+++ SL+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASSTGSTLKLTYTDVRRQEIQSYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +   +  + L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++ +D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYESLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F +   ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKINYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++    Y  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRVFGLIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R FGLIA  AL FN+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI+ SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

78) secD in NC_014259


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  500 bits (1887),  Expect = 8e-143, Method: Compositional matrix adjust.
 Identities = 326/635 (52%), Positives = 476/635 (75%), Gaps = 23/635 (3%)

Query  2    RYPAWKYllilvvlvvSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANI  61
            +YP WKY+LIL VLVV+ +Y+ P+LYPD++A+QISGA ++ Q+ Q+ V++A + L  A I
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   ASHDNTFTNNA--ALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKP  119
            +   +++++N+  +LLR+S  E QL AK+V+R+ LGD+YVVALNLA TTP+WL+++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKIKFNNLALTNNVITVQFA  179
            MKLGLDL GGVHFLLEVDMDKA+  R+     +++  +R +K+++ +L+   NVI + F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DNADRDAAMDFLRRNGNEYTQQALASSTGSTLKLTYTDVRRQEIQSYAVNQNLTTLRNRI  239
            D+A+R+ A  ++R+   ++   +   +  + L+++ T  +  EI+ Y+++QNLTT+RNR+
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  240  NELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDSNDQYIDPYTGK  299
            NELGVAE+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL ++++D         
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------  295

Query  300  YNGQPLPPGTEVFAYESLDSGRQ-LLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDS  358
                     TE+F +   ++GR    ++R  I+TG++V +A ++F ++ G ++VNI LD+
Sbjct  296  ------KGTTEMFEFR--EGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDG  346

Query  359  AGGKLMSDATRNAVGKRMAVLFIENKQKITYVTDPKTGAQTEVRT-PYTES-VVINAATV  416
             GG LMS ATR+ VG+ MAV+FIE++   TY  +   G + +V    + E   +I+ AT+
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  417  QAVLGSTFRITGLSSPQEASElalmlragalaaPMYFVEERVVGPSLGQENIDKGVLSTQ  476
            Q+ LGS FRITGL++  E+SELAL+LRAG+LAAPMYF EER +GPSLG +NI KGV ++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  477  IGFLLVAIWMVVFFRLFGLIANFALVVNLAMILTVMSWIGASLTLPGIAGIVITIGMAVD  536
             G L+V++ ++ ++R+FGLIA  AL  N+ M+L++MS +GA+LTLPGIAGIV+T+GMAVD
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  537  ANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFA  596
            ANVLI  RIREE+  G + ++AI  G+DRAY +I+D+NLTT+LV+ ILFA+GTGP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  597  VTLMIGIVCSMFTAITVTRAIVQIIYGKRRNLKKL  631
            VT+ +GI  SMFTAI VTRA+V++IYG  R++KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKL  620

79) secD in NC_007969


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  495 bits (1866),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 323/627 (52%), Positives = 484/627 (78%), Gaps = 12/627 (1%)

Query  2    QYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAGL  61
            +YP WKY+LI  VL+++ +Y+APNLYPD++A+QI++A+++ Q++++ + ++   L +AG+
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   NYHDGTF--KGNSALVRLDNPVDQLKAQEVLRKNLGENYVVALNLAQTTPQWLRDIGAKP  119
                +++  +G+++L+RL +  DQL A++V+RK LG++YVVALNLA+TTP+WLR++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERIAVKGIKNDKRSVVLHFS  179
            MKLGLDL GGV+F+LEVDMDKA++ RL     +++  LR E++  +++ +    + L F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DTDTRNRAQNVLQSSMGNTFALQSSIDEQGPALILAYNDATLDEINSYAVNQNLTTLRNR  239
            D   R++A+ +++ +  + F + ++  +  P L +A   A L EI  Y+++QNLTT+RNR
Sbjct  184  DDAEREQARALVRKTFTD-FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNR  242

Query  240  IAELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPP  299
            + ELGV+E+LVQ QGA+RIVVELPGVQDTAEAKR+LG+TANLEFR+ + G+++  G    
Sbjct  243  VNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGT---  298

Query  300  AGTEAFPFETLDGPPVLLERQAIVTGDKVTNAQTGIDESGSPEVSITLDSAGGKLMQNAT  359
              TE F F   + P+  +ER  I+TGD+VT+A++++DE G P+V+I LD+ GG LM  AT
Sbjct  299  --TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRAT  356

Query  360  RTAVGKQMAVLFIENKQRIAYEEDPVTGETTEVRTPY--AETKVINRANIQAVLGSSFRI  417
            R+ VG+ MAV+FIE++   +Y  + V G   +V       + K+I+ A IQ+ LGS FRI
Sbjct  357  RSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRI  416

Query  418  TgldssaeaaelalllrsgalaaPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFM  477
            TGL++ +E++ELALLLR+G+LAAPMYF EERTIGPSLG +NI KG+ ++  G L+V  F+
Sbjct  417  TGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFI  476

Query  478  IIFYRLFGVIANIALAFNViiiisimsilgssLTLPGIAGIVLTIGMAVDANVLIFERIR  537
            + +YR+FG+IA +ALAFN+++++++MS+LG++LTLPGIAGIVLT+GMAVDANVLIF RIR
Sbjct  477  MAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  538  EEIANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSS  597
            EEIANG+  + AI  GFDRAY++I+DAN+TTLLV+ ILFA+GTGP+KGFA+T+++GI +S
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  598  LFTAILVTRALIQIAYGKRKSIKRLSI  624
            +FTAI+VTRA++++ YG R  +K+L I
Sbjct  597  MFTAIMVTRAMVNLIYGGR-DFKKLWI  622

80) secD in NC_009524


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  490 bits (1846),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 319/619 (52%), Positives = 485/619 (79%), Gaps = 11/619 (1%)

Query  2    HYPAWKYFLIVTVLVIAGLYALPNLYPDEPAVQVTSASAGTELTEEVLTQSTQLLDEAGI  61
             YP WKY LI++VLV++ +Y+ PNLYPD++A+Q+++AS++ ++T+  + ++++ L +AGI
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   AYHDPTFS--GNSALLRVENGAEQRKAQEVLRQQLGNDYVVALNLAQTTPEWLRSIGAKP  119
            +   ++++  G+++LLR+ +  +Q  A++V+R+ LG+DYVVALNLA+TTP+WLR++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  LKLGLDLRGGVRFVLEVDMNKALEQRLKTTSNDVRSSLRAERVAAKGINVVEQGLVLHFK  179
            +KLGLDL GGV+F+LEVDM+KA++ RLK    +V++ LR E+V  +++  + + + L F 
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DVDLRDKAQRIIQRDHGAQFDMQALMDDQGPALRLNYNEATLKEINEYAVGQNLTTLRNR  239
            D   R++A+ ++++   ++F++ +   +  P LR+    A L EI EY++ QNLTT+RNR
Sbjct  184  DDAEREQARALVRKTF-TDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNR  242

Query  240  IAELGVSEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVADENTTYAGGIPP  299
            + ELGV+E+LVQ QG+NRIVVELPGVQDTAEAKR+LG+TANLEFRL A+ + +       
Sbjct  243  VNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS------K  296

Query  300  AGTEAFPYMTLDGPPSLLNRQPILTGEKVQGATSGLDENGAPEVNITLDTAGGKLMQNAT  359
            + TE F +   + P++ ++R  I+TG++V +A +++DE+G P+VNI LD  GG LM  AT
Sbjct  297  GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRAT  356

Query  360  KSAVGKQMAVLFIENKQKIAYSKDPNTG--ETIETRTPYAETKIISQANIQAVLGSSFRI  417
            +S VG+ MAV+FIE++   +Y+++   G    +  +T   + KIIS A IQ+ LGS FRI
Sbjct  357  RSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRI  416

Query  418  TglnsnaeaaelalllrsgalaaPMYFVEERTIGPSLGQQNIDDGLFSTKIGYLLVFLFM  477
            TGLN+++E++ELALLLR+G+LAAPMYF EERTIGPSLG +NI  G+ ++  G L+V LF+
Sbjct  417  TGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFI  476

Query  478  ILFYRLFGVianialafnliimiaVLSILGASLTLPGIAGIVLTIGMAVDANVLIFERIR  537
            + +YR+FG+IA +ALAFN+++++A++S+LGA+LTLPGIAGIVLT+GMAVDANVLIF RIR
Sbjct  477  MAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  538  EEIAEGVRPKSAIVAGFDRAFSSIFDGNITTLLVAIILFSIGSGPIKGFAITLAIGILSS  597
            EEIA+G+  + AI  GFDRA+++I+D+N+TTLLV+ ILF++G+GP+KGFA+T+++GI++S
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  598  LFTAIIVTRALVHLIYGNR  616
            +FTAI+VTRA+V+LIYG R
Sbjct  597  MFTAIMVTRAMVNLIYGGR  615

81) secD in NC_010995


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  484 bits (1825),  Expect = 6e-138, Method: Compositional matrix adjust.
 Identities = 334/635 (53%), Positives = 478/635 (76%), Gaps = 23/635 (3%)

Query  1    MLNRYPlwkylvllflllIGTVYAIPNLYIPDPAVQVSGDSSAKVIDQPVLEAMEAALKK  60
            MLN+YPLWKY+++L +L++G +Y+ PNLY  D+A+Q+SG S+A  + Q+ ++    AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   ADIEYFGA--EADGKTALVRLLNNDQQMVARTVIQRALGDGYVVALNKASTTPGWLQALG  118
            A+I   ++    +GK +L+RL ++++Q+ A+ V+++ALGD+YVVALN A TTP WL+ +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  AEPMKLGLDLAGGVHFLLEVDTASAVAKRQEISADEMKDKLRKEKIRYASVDTDRDNRIV  178
            A PMKLGLDL+GGVHFLLEVD   A+  R  +  +E+K  LRKEK+RY S+  + +N I 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  179  GRFRSADTRDQAINSLRRDHPNQLFTRVDNGESNFSFVA----SLSETAVRTIESEAVSQ  234
              F     R+QA   +R+      FT  +   ++++ ++    +L+ + +  I   ++ Q
Sbjct  180  LGFGDDAEREQARALVRKT-----FTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  235  NLITLRNRVNELGVSEPIVQSQGRSRIIVQLPGIQDPAEAKRVIGKTANLEFRLGASPDT  294
            NL T+RNRVNELGV+EP+VQ QG +RI+V+LPG+QD AEAKR++GKTANLEFRLGA+PD 
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  295  PITNREEFPYKDEIMQMQRGNAVLERQIIVTGDHVANAQSSFDPESNQPQVNITLDGLGG  354
            +    E F +++      R  A +ER +I+TGD+V++A++SFD E  +PQVNI LDG GG
Sbjct  295  SKGTTEMFEFREG----GRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGG  349

Query  355  EKMHRITRNNVGRQMGILFIEYKNRTEITRNAQGEEVHRNIQ---Y-VEKKVISLATIQS  410
            E M R TR+NVGR M+++FIE +  T  TR+   + V++++    +  +KK+ISLATIQS
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQ-MVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  411  ALGVQFRITGLDKPGEASElalllragalaaPMHFVEERTIGPSLGAQNIRNGVDATIWG  470
            +LG QFRITGL+  GE+SELALLLRAG+LAAPM F EERTIGPSLGA+NI +GVDA++WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  471  MILVVIFMLIAYRVFGVFANLALTMNVLLMIAVMSMFGATLTLPGIAGIVLSIGMAVDAN  530
            M++V +F++  YR FG++A +AL+ N+++++A+MS++GATLTLPGIAGIVL++GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  531  VLIHSRIREELKGGASPQQAIYAGYERAWITILDANLTTLIVGIILFAIGTGPVKGFAVT  590
            VLI SRIREE+  G + Q+AI  G++RA  +ILDANLTTL+VG ILFA+GTGPVKGFAVT
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  591  LMIGIATSMYTSVTCSRALANLVYGSRKNLKKISI  625
            + +GI TSM+T++  +RA+ NL+YG+R ++KK+ I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGR-DFKKLWI  622

82) secD in NC_012997


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  482 bits (1816),  Expect = 3e-137, Method: Compositional matrix adjust.
 Identities = 333/628 (54%), Positives = 469/628 (75%), Gaps = 14/628 (2%)

Query  1    MNRYPLWKYllilvilgvgFIYALPNIYAPDPAVQISGSSASLKIDQKAMDKAVAVLDKG  60
            +N+YPLWKY+LIL +L VGFIY+ PN+Y+ D+A+QISG+S++L++ Q  +D+A   L  +
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIAY--FGVEHDDLNGLIRLRQQSDQLKAQREIQEALGGDYVVAVNLAPTTPDWLLEMGA  118
             I+    ++ +++  GL+RL +Q DQL A+  ++ ALG+DYVVA+NLA TTP+WL ++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  GPMKLGLDLAGGVHFLLEVDTPKVLAAEYKSIQEQLEKQIRSERI-YGARVTLRDNQLTV  177
             PMKLGLDL+GGVHFLLEVD  K + A  K  + ++   +R E++ Y +   L +N + +
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL-GNVIQL  180

Query  178  VADSDADRMKLTEFMRSDVPELQYERAEESGKFIVRARLSDAYVREKEDYAVTQNLTTLR  237
              + DA+R +   ++R    +++   AE +G  ++R  L+ A + E  +Y++ QNLTT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNEIGVAEPLVQRQGRNRIVVELPGIQDTARAKSIIGKTANLEFRLEANESTLSSQKE  297
            NRVNE+GVAEPLVQRQG NRIVVELPG+QDTA AK I+GKTANLEFRL A      +  E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  298  SYPWRDEASQRRFGDNTVEKRAVITGERVTNAQVGFDQDTSQPQVNITLDGQGGAAINRA  357
             +  R+ +        +VE+  +ITG++VT+A+ +FD++ ++PQVNI LDG+GG  ++RA
Sbjct  301  MFEFREGGRP----AAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELMSRA  355

Query  358  TRHNVGRRMAVLFIEYKTKSTKYKDENGEEQTRYEQVP----EAGIISFPTVQSALGRNF  413
            TR NVGR MAV+FIE +  +T Y  +  +   +   V     +  IIS++T+QS+LG +F
Sbjct  356  TRSNVGRSMAVIFIEQRPTTT-YTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQF  414

Query  414  RITGLDNPQEASElalllragalaaPMGFVEERTIGPSLGAENIGLGIKSVQIGLGLVLV  473
            RITGL+   E+SELALLLRAG+LAAPM F EERTIGPSLGA+NI  G+ +   G+ +V +
Sbjct  415  RITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSL  474

Query  474  FMLFYYRVFGLAANIALGTNLVLLVAVMSIFGATLTLPGIAGIVLTVGMAVDANVLIFSR  533
            F++  YR FGL A +AL+ N+V+L+A+MS++GATLTLPGIAGIVLT+GMAVDANVLIFSR
Sbjct  475  FIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSR  534

Query  534  IREELRDGMPAQSAIKAGFERAFETILDANLTTFIVAIILYAIGSGSVKGFAVTLAIGIV  593
            IREE+ +GM  Q AI  GF+RA+ +ILDANLTT++V+ IL+A+G+G+VKGFAVT+++GI 
Sbjct  535  IREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIF  594

Query  594  TSMFTAVMVTRAIINLIYGGRKINKLWI  621
            TSMFTA+MVTRA++NLIYGGR ++KLWI
Sbjct  595  TSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

83) secD in NC_007204


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  473 bits (1782),  Expect = 1e-134, Method: Compositional matrix adjust.
 Identities = 322/627 (52%), Positives = 484/627 (78%), Gaps = 12/627 (1%)

Query  2    QYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAGL  61
            +YP WKY+LI  VL+++ +Y+APNLYPD++A+QI++A+++ Q++++ + ++   L +AG+
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   NYHDGTF--KGNSALVRLDNPVDQLKAQEVLRKNLGDNYVVALNLAQTTPQWLRDIGAKP  119
                +++  +G+++L+RL +  DQL A++V+RK LGD+YVVALNLA+TTP+WLR++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERIAVKGIKNDKRTVVLHFS  179
            MKLGLDL GGV+F+LEVDMDKA++ RL     +++  LR E++  +++ +    + L F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DTDNRNRAQNVLQSSIGNTFTLQSSIDEQGPALILAYNDATLDEINSYAVNQNLNTLRNR  239
            D  +R++A+ +++ ++ + F + ++  +  P L +A   A L EI  Y+++QNL T+RNR
Sbjct  184  DDAEREQARALVRKTFTD-FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNR  242

Query  240  IAELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPP  299
            + ELGV+E+LVQ QGA+RIVVELPGVQDTAEAKR+LG+TANLEFR+ + G+++  G    
Sbjct  243  VNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGT---  298

Query  300  AGTEAFPFETLDGPPVLLERQAIVTGDKVTNAQTGIDESGSPEVSITLDNAGGKLMQNAT  359
              TE F F   + P+  +ER  I+TGD+VT+A++++DE G P+V+I LD  GG LM  AT
Sbjct  299  --TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRAT  356

Query  360  RTAVGKQMAVVFIENKQRVTYKEDSATG--ETVEVRTPYAETKVINRANIQAVLGSSFRI  417
            R+ VG+ MAV+FIE++   TY  +   G    V V+T   + K+I+ A IQ+ LGS FRI
Sbjct  357  RSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRI  416

Query  418  TgldssaeaaelalllrsgalaaPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFM  477
            TGL++ +E++ELALLLR+G+LAAPMYF EERTIGPSLG +NI KG+ ++  G L+V  F+
Sbjct  417  TGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFI  476

Query  478  IIFYRLFgvianialavnviiiisimsilgsslTLPGIAGIVLTIGMAVDANVLIFERIR  537
            + +YR+FG+IA +ALA N+++++++MS+LG++LTLPGIAGIVLT+GMAVDANVLIF RIR
Sbjct  477  MAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  538  EELANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFILFSIGTGPIKGFAITLAIGIVSS  597
            EE+ANG+  + AI  GFDRAY++I+DAN+TTLLV+ ILF++GTGP+KGFA+T+++GI +S
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  598  LFTAILVTRALIQIAYGKRKSIKRLSI  624
            +FTAI+VTRA++++ YG R  +K+L I
Sbjct  597  MFTAIMVTRAMVNLIYGGR-DFKKLWI  622

84) secD in NC_021661


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  471 bits (1776),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 322/627 (52%), Positives = 484/627 (78%), Gaps = 12/627 (1%)

Query  2    QYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAGL  61
            +YP WKY+LI  VL+++ +Y+APNLYPD++A+QI++A+++ Q++++ + ++   L +AG+
Sbjct  4    KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGI  63

Query  62   NYHDGTF--KGNSALVRLDNPVDQLKAQEVLRKNLGENYVVALNLAQTTPQWLRDIGAKP  119
                +++  +G+++L+RL +  DQL A++V+RK LG++YVVALNLA+TTP+WLR++GA P
Sbjct  64   PVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATP  123

Query  120  MKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERIAVKGIKNDKRSVVLHFS  179
            MKLGLDL GGV+F+LEVDMDKA++ RL     +++  LR E++  +++ +    + L F+
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFG  183

Query  180  DTDTRNRAQNVLQSSMGNTFALQSSIDEQGPALILAYNDATLDEINSYAVNQNLTTLRNR  239
            D   R++A+ +++ +  + F + ++  +  P L +A   A L EI  Y+++QNLTT+RNR
Sbjct  184  DDAEREQARALVRKTFTD-FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNR  242

Query  240  IAELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPP  299
            + ELGV+E+LVQ QGA+RIVVELPGVQDTAEAKR+LG+TANLEFR+ + G+++  G    
Sbjct  243  VNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGT---  298

Query  300  AGTEAFPFETLDGPPVLLERQAIVTGDKVTNAQTGIDESGSPEVSITLDSAGGKLMQNAT  359
              TE F F   + P+  +ER  I+TGD+VT+A++++DE G P+V+I LD+ GG LM  AT
Sbjct  299  --TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRAT  356

Query  360  RTAVGKQMAVLFIENKQRIAYEEDPATG--ETIEVRTPYAETKVINRANIQAVLGSSFRI  417
            R+ VG+ MAV+FIE++   +Y  +   G    + V+T   + K+I+ A IQ+ LGS FRI
Sbjct  357  RSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRI  416

Query  418  TgldssaeaaelalllrsgalaaPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFM  477
            TGL++ +E++ELALLLR+G+LAAPMYF EERTIGPSLG +NI KG+ ++  G L+V  F+
Sbjct  417  TGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFI  476

Query  478  IIFYRLFgvianialavnviiiisimsilgsslTLPGIAGIVLTIGMAVDANVLIFERIR  537
            + +YR+FG+IA +ALA N+++++++MS+LG++LTLPGIAGIVLT+GMAVDANVLIF RIR
Sbjct  477  MAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  538  EEIANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSS  597
            EEIANG+  + AI  GFDRAY++I+DAN+TTLLV+ ILFA+GTGP+KGFA+T+++GI +S
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  598  LFTAILVTRALIQIAYGKRKSIKRLSI  624
            +FTAI+VTRA++++ YG R  +K+L I
Sbjct  597  MFTAIMVTRAMVNLIYGGR-DFKKLWI  622

85) secD in NC_018691


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  462 bits (1742),  Expect = 2e-131, Method: Compositional matrix adjust.
 Identities = 309/622 (50%), Positives = 468/622 (76%), Gaps = 16/622 (2%)

Query  1    MTRYPRWKFFLLMAVLFVCGLYALPNLFPDAPAVQISSAKPGGTVSDSASQRVLRQLDQA  60
            + +YP WK+ L++AVL V  +Y+ PNL+PD +A+QIS+A  +  V+++  +R  + L +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GLEHGPGEQIDGG-SWLVRFTDNDSQLRARELLAGSLGDDYVVALNLAPTTPGWLRAIGA  119
            G+   ++   + G + L+R++ ++ QL A++++  +LGDDYVVALNLA TTP WLR +GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  120  SPMNLGLDLRGGVHFLLQVDMEAVVNQRMEAWAGQIKLALKNEGIRYRDVQQDGQQLRVQ  179
            +PM+LGLDL GGVHFLL+VDM+  ++ R+    G++K  L++E +RYR + Q G+ +++ 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  180  FANSEDADSARTLLRNALPEFSLDSD--PEQRVLVFNLNPTALKEMQDYAVDQNRTALNN  237
            F++  + + AR+L+R+++ +F + +       VL   L P+ L E+++Y++ QN T++ N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  238  RVNELGVAEPVVQRQGADRIVVQLPGVQDAAQARRILGRTATLEFRLVNQDYPASRAATG  297
            RVNELGVAEP+VQRQGA+RIVV+LPGVQD+A+A+RILG+TA LEFRL         A+ +
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG--------AGPD  293

Query  298  VAPPGTEIFPFRSQGDRPVILERSKIATGDEVTNAQMGFDPQNGTPQVNVSLDSAGARRM  357
             +   TE+F FR  G  +  +ER+ I TGD+VT+A+ +FD ++G PQVN++LD+ G+  M
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGGELM  352

Query  358  QRVTSQNVGNPMAVLFIETKTEMS-SRTNENGETEQVPVST--TDRYVINVATIQDTLGS  414
             R T  NVG +MAV+FIE +   + +R   NG   +VPV T   D+ +I++ATIQ  LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  415  RFRITGldspaeaselalllragslaaPVTIIEERTIGPSLGAENIESGLKSmalgmvlv  474
            +FRITGL++ +E+SELALLLRAG+LAAP+ + EERTIGPSLGA+NI  G+ +   GM++V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  475  lvfmlvWYKVFGIFANVALVGNLLIIVGIMSLIPGATLTLPGIAGIVLTVGMAVDANVLI  534
             +F++  Y+ FG++A VAL  N+++++++MSL+ GATLTLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  535  YERIREELKKGVRPRQAIDEGYAKAFSTILDANITTMIVAVILFSAGTGSVQGFAVTLFI  594
            + RIREE+ +G+  ++AI EG+ +A+++ILDAN+TT++V+ ILF+ GTG+V+GFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  595  GILSSMFTAIVGTRAMVEMVYG  616
            GI++SMFTAI+ TRAMV+++YG
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYG  613

86) B565_2390 in NC_015424


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  456 bits (1717),  Expect = 2e-129, Method: Compositional matrix adjust.
 Identities = 304/629 (49%), Positives = 465/629 (74%), Gaps = 23/629 (3%)

Query  1    MLNRYPLWKYLMVILVIAIGFLYAAPNLYGEDPALQVSASRGA-EVKLDTLDLVKETLEA  59
            MLN+YPLWKY++++ V+ +GF+Y+APNLY +D+A+Q+S++  A +V    +D    +L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AKIPVKHAAFEHGFI--LIRFKNTEDQLKARDIVANKLGDNFITALNLAPSTPAWLEAIG  117
            A IPVK +++ +     L+R+ + EDQL A+D+V + LGD+++ ALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRSELRTQKIRYSGVRRVGDQVQV  177
            A+P+KLGLDL GGVHFL+EVDM  A+  +      + ++ LR +K+RY ++ ++G+ +Q+
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  IFRDEADQERAVSHLRRQNPDLTFTTEQKGDEFILLAGLSEAKIKEVKKYALEQNITIIR  237
             F D+A++E+A + +R+   D+ +T  +  +  +L  +L+ AK+ E++ Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQQQGAERIVVELPGIQDTARAKEILGATATLEFHMVDETADIQAAAD  297
            NRVNELGVAEPLVQ+QGA+RIVVELPG+QDTA AK ILG TA LEF++     D +++++
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  298  GRVPPSSKVYNDRN-GRP-VVLQKRVILTGDHIVGAQSGFDEYSRPQVNIKLDGQGGNKM  355
                    +++ R+ GRP   +++ +I+TGD++ +A+++FDE +RPQVNI+LDG+GG+ M
Sbjct  301  --------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  ANFTKDNVGKGMATVFIEYKPVGQ------PGPDGK---RKFRKQEEVINVATIQSRLGS  406
            +  T+ NVG++MA +FIE +P          G +     + F+ +  +I++ATIQS LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  QFRITGIDnaneahnlalllragaliaPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVI  466
            QFRITG++   E+ +LALLLRAG+L AP+ + EERTIGPSLG +NI  G++A  W+ML +
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  467  VLFMGIYYRAFGWVANLALCMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLi  526
             LF+   YR FG +A +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  527  yerireeirNGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGI  586
            + RIREEI NG  VQ+AI  GFDRA+++I D+N+T+L+   ILF++GTG++KGFA+T+++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  587  GLTASMFTAITVSRAIINLAWGGRRIDKL  615
            G+ +SMFTAI V+RA++NL  GGR + KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

87) secD-1 in NC_008570


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  455 bits (1714),  Expect = 3e-129, Method: Compositional matrix adjust.
 Identities = 304/629 (49%), Positives = 463/629 (74%), Gaps = 23/629 (3%)

Query  1    MLNRYPLWKYLMVVVVIAIGFLYAAPNLYGEDPALQISASRGA-EVKLDTLDLVKETLDA  59
            MLN+YPLWKY++++ V+ +GF+Y+APNLY +D+A+QIS++  A +V    +D    +L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQIPVKHAAFEHGFI--LVRFKNTEEQLKARDIVANKLGDNFITALNLAPSTPAWLEAIG  117
            A IPVK +++ +     L+R+ + E+QL A+D+V + LGD+++ ALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRSELRTQKIRYSGVRRAGDQVQV  177
            A P+KLGLDL GGVHFL+EVDM  A+  +      + ++ LR +K+RY ++ + G+ +Q+
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  LFRDEADQAKAISHLRRQNPDLTFTTEQKGDEFVLLAGLSEAKIKEVKKYALEQNITIIR  237
             F D+A++ +A + +R+   D+ +T  +  +  VL  +L+ AK+ E++ Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQQQGAERIVVELPGIQDTARAKEILGATATLEFHMVDETADIQAAAD  297
            NRVNELGVAEPLVQ+QGA+RIVVELPG+QDTA AK ILG TA LEF++     D +++++
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  298  GRVPPSSKVYNDRN-GRP-VVLQKRIILTGDHIVGAQSGFDEYSRPQVNIKLDGQGGNKM  355
                    +++ R+ GRP   +++ +I+TGD++ +A+++FDE +RPQVNI+LDG+GG+ M
Sbjct  301  --------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  ANFTKDNVGKGMATVFIEYKPVGQ------PGPDGK---RKFRKQEEVINVATIQSRLGS  406
            +  T+ NVG++MA +FIE +P          G +     + F+ +  +I++ATIQS LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  QFRITGIDnaneahnlalllragaliaPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVI  466
            QFRITG++   E+ +LALLLRAG+L AP+ + EERTIGPSLG +NI  G++A  W+ML +
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  467  VLFMGIYYRAFGWVANIALTMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLi  526
             LF+   YR FG +A +AL+ N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  527  yerireeirNGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGI  586
            + RIREEI NG  VQ+AI  GFDRA+++I D+N+T+L+   ILF++GTG++KGFA+T+++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  587  GLSASMFTAITVSRAIINLAWGGRRLDKL  615
            G+ +SMFTAI V+RA++NL  GGR + KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

88) AHML_09590 in NC_021290


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  455 bits (1715),  Expect = 3e-129, Method: Compositional matrix adjust.
 Identities = 304/629 (49%), Positives = 463/629 (74%), Gaps = 23/629 (3%)

Query  1    MLNRYPLWKYLMVVVVIAIGFLYAAPNLYGEDPALQISASRGA-EVKLDTLDLVKETLDA  59
            MLN+YPLWKY++++ V+ +GF+Y+APNLY +D+A+QIS++  A +V    +D    +L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQIPVKHAAFEHGFI--LVRFKNTEEQLKARDIVANKLGDNFITALNLAPSTPAWLEAIG  117
            A IPVK +++ +     L+R+ + E+QL A+D+V + LGD+++ ALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRSELRTQKIRYSGVRRAGDQVQV  177
            A P+KLGLDL GGVHFL+EVDM  A+  +      + ++ LR +K+RY ++ + G+ +Q+
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  LFRDEADQAKAISHLRRQNPDLTFTTEQKGDEFVLLASLSEAKIKEVKKYALEQNITIIR  237
             F D+A++ +A + +R+   D+ +T  +  +  VL  +L+ AK+ E++ Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQQQGAERIVVELPGIQDTARAKEILGATATLEFHMVDETADIQAAAD  297
            NRVNELGVAEPLVQ+QGA+RIVVELPG+QDTA AK ILG TA LEF++     D +++++
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  298  GRVPPSSKVYNDRN-GRP-VVLQKRIILTGDHIVGAQSGFDEYSRPQVNIKLDGQGGNKM  355
                    +++ R+ GRP   +++ +I+TGD++ +A+++FDE +RPQVNI+LDG+GG+ M
Sbjct  301  --------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  ANFTKDNVGKGMATVFIEYKPVGQ------PGPDGK---RKFRKQEEVINVATIQSRLGS  406
            +  T+ NVG++MA +FIE +P          G +     + F+ +  +I++ATIQS LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  QFRITGIDnaneahnlalllragaliaPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVI  466
            QFRITG++   E+ +LALLLRAG+L AP+ + EERTIGPSLG +NI  G++A  W+ML +
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  467  VLFMGIYYRAFGWVANIALTMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLi  526
             LF+   YR FG +A +AL+ N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  527  yerireeirNGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGI  586
            + RIREEI NG  VQ+AI  GFDRA+++I D+N+T+L+   ILF++GTG++KGFA+T+++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  587  GLSASMFTAITVSRAIINLAWGGRRLDKL  615
            G+ +SMFTAI V+RA++NL  GGR + KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

89) secD in NC_009348


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  454 bits (1710),  Expect = 6e-129, Method: Compositional matrix adjust.
 Identities = 305/629 (49%), Positives = 465/629 (74%), Gaps = 23/629 (3%)

Query  1    MLNRYPLWKYLMVVFVIAIGFLYAAPNLYGEDPALQISASRGA-EVKLETLDQVKETLEA  59
            MLN+YPLWKY++++ V+ +GF+Y+APNLY +D+A+QIS++  A +V    +D+   +L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQIPVKHAAFEHGFI--LIRFKNTEDQLKARDVVASKLGDNFITALNLAPSTPAWLEAIG  117
            A IPVK +++ +     L+R+ + EDQL A+DVV   LGD+++ ALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRTELRTQKIRYSGVRRVGDQVQV  177
            A+P+KLGLDL GGVHFL+EVDM  A+  +      + ++ LR +K+RY ++ ++G+ +Q+
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  LFRDEADQAKAVSHLRRQNPDLTFTTEQKGDEFILLAGLSEAKIKEVKKYALEQNITIIR  237
             F D+A++ +A + +R+   D+ +T  +  +  +L  +L+ AK+ E++ Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQQQGAERIVVELPGIQDTARAKEILGATATLEFHMVDETADIQAAAD  297
            NRVNELGVAEPLVQ+QGA+RIVVELPG+QDTA AK ILG TA LEF++     D +++++
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  298  GRVPPSSKVYNDRN-GRP-VVLQKRVILTGDHIVGAQSGFDEYSRPQVNIKLDGQGGNKM  355
                    +++ R+ GRP   +++ +I+TGD++ +A+++FDE +RPQVNI+LDG+GG+ M
Sbjct  301  --------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  ANFTKDNVGKGMATVFIEYKPVGQ------PGPDGK---RKFRKQEEVINVATIQSRLGS  406
            +  T+ NVG++MA +FIE +P          G +     + F+ +  +I++ATIQS LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  QFRITGIDnaneahnlalllragaliaPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVI  466
            QFRITG++   E+ +LALLLRAG+L AP+ + EERTIGPSLG +NI  G++A  W+ML +
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  467  VLFMGIYYRAFGWVANLALTMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLi  526
             LF+   YR FG +A +AL+ N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  527  yerireeirNGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGI  586
            + RIREEI NG  VQ+AI  GFDRA+++I D+N+T+L+   ILF++GTG++KGFA+T+++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  587  GLSASMFTAITVSRAIINLGWGGRRIDKL  615
            G+ +SMFTAI V+RA++NL  GGR + KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

90) Fbal_2775 in NC_014541


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  453 bits (1707),  Expect = 1e-128, Method: Compositional matrix adjust.
 Identities = 313/630 (50%), Positives = 461/630 (74%), Gaps = 28/630 (4%)

Query  1    MLNKYPMWKNLLVIFVIAIGALYAAPNLYGEDPALQIS-ATRNVALDSATLDQVQTALQG  59
            MLNKYP+WK +L++ V+ +G +Y+APNLY +D+A+QIS A+  + +  A +D+   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EGLSAKSVIMEEGQI--LARFSNAEDQIEAKEVVAQALGGDYIVALNLAPATPEWLKSLG  117
             G++ K+  + E     L R+S+ EDQ+ AK+VV +ALG+DY+VALNLA +TP+WL+++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKLGLDLRGGVNFLMEVDMNEAVHKQQEQIVTDFRADLREQRLRYSGVRVVGDAVEV  177
            + PMKLGLDL GGV+FL+EVDM+ A++ +      + +A LR +++RY ++  +G+ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  RFRDAAVAEQAYSYLRGRNANLVFSQPDDL----VILATLSEPYLKEIKEYALNQNINIL  233
             F D A  EQA + +R   +++ ++ P +L    V+  +L+ + L EI+EY+++QN+  +
Sbjct  181  GFGDDAEREQARALVRKTFTDFEIT-PAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  234  RNRVNELGVAEPVVQRQGAERITVELPGVQDTARAKEILGATATLEFRMVAQNVDLNAAT  293
            RNRVNELGVAEP+VQRQGA+RI VELPGVQDTA AK ILG TA LEFR+ A   D +++T
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTT  299

Query  294  RGLVPPGTRLYEDRDG-RPVV-LEQQVILTGDHITGAQSGFSETSQPQVNINLDAAGGNK  351
                     ++E R+G RP   +E+ +I+TGD++T+A+++F E ++PQVNINLD+ GG+ 
Sbjct  300  E--------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  352  MADFTRDKIGAAMATVFIEYKPT---------GERNADGSPQFDKIEEVINVATIQARLG  402
            M+  TR ++G +MA +FIE +PT         G  +      F     +I++ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  403  RNFRITGIGSPAEahnlalllragaliaPITIVQERTIGPSLGQENINNGMAALMWGMLA  462
             +FRITG+ + +E+ +LALLLRAG+L AP+ + +ERTIGPSLG +NI +G+ A +WGML 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  463  VVVFMAIYYRKFGLIAVGALVVNLVMIVGIMSMIPGATLTLPGIAGIVLTVGMAVDGNVL  522
            V +F+   YR FGLIA  AL  N+VM++++MS++ GATLTLPGIAGIVLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  523  IFERIREELKAGRSVQQAIHEGYSNALSTIADANITTLITALILFAVGTGPVKGFAVTLM  582
            IF RIREE+  G +VQ+AI EG+  A ++I DAN+TTL+ + ILFA+GTGPVKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  583  IGIATSMFTSIVGSRAVVNALWGGKRLKKL  612
            +GI TSMFT+I+ +RA+VN + GG+ +KKL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

91) secD in NC_020796


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  451 bits (1699),  Expect = 5e-128, Method: Compositional matrix adjust.
 Identities = 300/635 (48%), Positives = 450/635 (71%), Gaps = 30/635 (4%)

Query  1    MLNRYPLWKYIMLIVALVIGLLYALPNLYGEDPAVQITGAR-GVAASESTLVQVRDVLEK  59
            MLN+YPLWKY++++  LV+G++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QHIPSKSIALENGAI--LARFTDTDIQLRAREALVDTLGDKYVVALNLAPATPKWLAMVG  117
              IP K+ +L + +   L R++  + QL A++ +  +LGD YVVALNLA +TP+WL  VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKLPDPASG  177
            A PMKLGLDL GGVHFL++VDMD A+        + +++ LR   + Y ++ +L +    
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV---  177

Query  178  GVEINFRDAAARDAASNYLSPRHRDLVFSNA---GDTTLKAVMTDDRLREAREYAVQQNI  234
             +++ F D A R+ A   +     D+ ++ A   G   L+  +T  +L E REY+++QN+
Sbjct  178  -IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  235  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQ  294
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  295  AAASGRVPGDSEVKYTRDGRPVVLYKR-VILTGDHITDSTSSQDEFNRPQVNISLDSAGG  353
            +++           +  +GRP     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG
Sbjct  297  GTTE-------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  354  SAMSNFTKDNIGKPMATLFVE------YK----DSGKKDASGKPILEKQEEVINVATIQS  403
              MS  T+ N+G++MA +F+E      Y     ++  KD + +  +  +  +I++ATIQS
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQS  408

Query  404  RLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLWG  463
             LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A LWG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  464  LVASIIFMVVYYKKFGLIATTALLANLVMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDA  523
            ++   +F++  Y+ FGLIAT AL  N+VM++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  524  NVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAI  583
            NVLI  RI+EE+ NG TVQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  584  TTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI  618
            T ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

92) secD in NC_013508


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  451 bits (1699),  Expect = 5e-128, Method: Compositional matrix adjust.
 Identities = 300/635 (48%), Positives = 450/635 (71%), Gaps = 30/635 (4%)

Query  1    MLNRYPLWKYIMLIVALVIGLLYALPNLYGEDPAVQITGAR-GVAASESTLVQVRDVLEK  59
            MLN+YPLWKY++++  LV+G++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QHIPSKSIALENGAI--LARFTDTDIQLRAREALVDTLGDKYVVALNLAPATPKWLAMVG  117
              IP K+ +L + +   L R++  + QL A++ +  +LGD YVVALNLA +TP+WL  VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKLPDPASG  177
            A PMKLGLDL GGVHFL++VDMD A+        + +++ LR   + Y ++ +L +    
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV---  177

Query  178  GVEINFRDAAARDAASNYLSPRHRDLVFSNA---GDTTLKAVMTDDRLREAREYAVQQNI  234
             +++ F D A R+ A   +     D+ ++ A   G   L+  +T  +L E REY+++QN+
Sbjct  178  -IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  235  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQ  294
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  295  AAASGRVPGDSEVKYTRDGRPVVLYKR-VILTGDHITDSTSSQDEFNRPQVNISLDSAGG  353
            +++           +  +GRP     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG
Sbjct  297  GTTE-------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  354  SAMSNFTKDNIGKPMATLFVE------YK----DSGKKDASGKPILEKQEEVINVATIQS  403
              MS  T+ N+G++MA +F+E      Y     ++  KD + +  +  +  +I++ATIQS
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQS  408

Query  404  RLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLWG  463
             LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A LWG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  464  LVASIIFMVVYYKKFGLIATTALLANLVMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDA  523
            ++   +F++  Y+ FGLIAT AL  N+VM++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  524  NVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAI  583
            NVLI  RI+EE+ NG TVQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  584  TTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI  618
            T ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

93) secD in NC_017309


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  451 bits (1699),  Expect = 5e-128, Method: Compositional matrix adjust.
 Identities = 300/635 (48%), Positives = 450/635 (71%), Gaps = 30/635 (4%)

Query  1    MLNRYPLWKYIMLIVALVIGLLYALPNLYGEDPAVQITGAR-GVAASESTLVQVRDVLEK  59
            MLN+YPLWKY++++  LV+G++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QHIPSKSIALENGAI--LARFTDTDIQLRAREALVDTLGDKYVVALNLAPATPKWLAMVG  117
              IP K+ +L + +   L R++  + QL A++ +  +LGD YVVALNLA +TP+WL  VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKLPDPASG  177
            A PMKLGLDL GGVHFL++VDMD A+        + +++ LR   + Y ++ +L +    
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV---  177

Query  178  GVEINFRDAAARDAASNYLSPRHRDLVFSNA---GDTTLKAVMTDDRLREAREYAVQQNI  234
             +++ F D A R+ A   +     D+ ++ A   G   L+  +T  +L E REY+++QN+
Sbjct  178  -IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  235  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQ  294
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  295  AAASGRVPGDSEVKYTRDGRPVVLYKR-VILTGDHITDSTSSQDEFNRPQVNISLDSAGG  353
            +++           +  +GRP     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG
Sbjct  297  GTTE-------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  354  SAMSNFTKDNIGKPMATLFVE------YK----DSGKKDASGKPILEKQEEVINVATIQS  403
              MS  T+ N+G++MA +F+E      Y     ++  KD + +  +  +  +I++ATIQS
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQS  408

Query  404  RLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLWG  463
             LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A LWG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  464  LVASIIFMVVYYKKFGLIATTALLANLVMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDA  523
            ++   +F++  Y+ FGLIAT AL  N+VM++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  524  NVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAI  583
            NVLI  RI+EE+ NG TVQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  584  TTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI  618
            T ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

94) secD in NC_011753


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  451 bits (1698),  Expect = 6e-128, Method: Compositional matrix adjust.
 Identities = 308/631 (49%), Positives = 455/631 (73%), Gaps = 22/631 (3%)

Query  1    MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAVQVTGARGA-SVDLSTLDAVTNALEA  59
            MLN+YPLWKY++++  + ++ +Y+ PN+Y +D+A+Q++GA  A  V  + +D  ++AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   ENLSTKSVALENGSI--LVRFNDTDTQISARDIITEALGDDVIVALNLAASTPDWLESIG  117
              ++ K+ +L + +   L+R++  + Q++A+D++  ALGDD +VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMQKLVGQQEEAFRSELREEKIRYRAIRPSGKDAVE  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++   G + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  178  VILRNEEQLAEAKSLLQSKHQDMTFVDSESNGRFSLIANFTETRLQEIRNYAVEQNITIL  237
            + + ++ +  +A++L++    D  +  +E NG   L   +T ++L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVdssadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR      + ++  
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-----LGAGPDD  294

Query  298  sgrapagsEIKQDRDGRPVV-LKKRVILGGSSITDASSSVDEYGRPQVNISLDSEGGSKM  356
            S  +    E++++  GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG  M
Sbjct  295  SKGTTEMFEFREG--GRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  357  STFSRQNIGKLMATVFAE------YKDSGRKTPEGRV---ILSKHEEVINQATIQSALGR  407
            S  +R N+G+ MA +F E      Y     +  E  V    +  +  +I+ ATIQS+LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  408  NFRITGIDSTAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIMAMVWGMAAV  467
            +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G+ A +WGM  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  468  MLFTLLYYRTFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLI  527
             LF +  YR FGLIA VAL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FERIREELRDGRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVGTGAIKGFAVTLSI  587
            F RIREE+ +G + Q+AI +G+  A+++I DAN+TTLL + ILFA+GTG++KGFAVT+S+
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIIGTRCIVNLMYGGKRVKKLSI  618
            GI+TSMFTAI+ TR +VNL+YGG+  KKL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

95) secD in NC_014562


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  447 bits (1683),  Expect = 9e-127, Method: Compositional matrix adjust.
 Identities = 304/633 (49%), Positives = 469/633 (75%), Gaps = 33/633 (5%)

Query  1    MLNRYPLWKYvmlvvvilvgllyalPNLYGEDPAVQITGARGS-AASEQTLDQIQSALKQ  59
            MLN+YPLWKYV+++ V++VG++Y+ PNLY +D+A+QI+GA  +   ++  +D+   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSVALENGAITA--RFANTDVQLRAREAIMKALGENYVVALNLAPATPRWLTMLS  117
              I  K+ +L + +  +  R+++ + QL A++ + KALG++YVVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTAL-SKLQEQNADTLRSDLRTKNIPYTNVNKIANYGV  176
            A PMKLGLDL GGVHFL+EVDMD A+ ++L+  +++ +++ LR  ++ Y ++ +++N  +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGE-VKALLRKEKVRYRSLPQLGN-VI  178

Query  177  EIRFRDAASRDAAISWLSSRHQDLVINSS---GSDALRATMSDARLSEAREYAVQQNITI  233
            ++ F D A R+ A + +     D+ I ++   G   LR +++ A+L+E REY+++QN+T 
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDPTAA  293
            +RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL   + D+   
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--  296

Query  294  ASGRVPGDSEVKDMRDG--QPVVLYKRVILTGDHITDSTSSMDEYNQPQVNISLDGAGGN  351
                  G +E+ + R+G   +  + + +I+TGD++TD+ +S DE  +PQVNI+LDG GG+
Sbjct  297  ------GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  352  IMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVANIQS  400
            +MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++A IQS
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQS  408

Query  401  RLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWG  460
             LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP++G +NIT+G++A LWG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LLASILFMVVFYKKFGLIATSALLVNLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDA  520
            +L   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAI  580
            NVLI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTAIGIATSMFTAIIGTRAIVNLVYGGKRINKL  613
            T ++GI TSMFTAI+ TRA+VNL+YGG+ ++KL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

96) secD in NC_013956


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  445 bits (1677),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 302/632 (48%), Positives = 460/632 (73%), Gaps = 31/632 (4%)

Query  1    MLNRYPLWKYIMlvvvlviglvYALPNLYGEDPAVQITGARGS-AASEQTLDQIQNVLKQ  59
            MLN+YPLWKY++++ VLV+G++Y+ PNLY +D+A+QI+GA  +   ++  +D+  + L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSVALENGAITA--RFANTDVQLRAREAIMKALGENYVVALNLAPATPRWLTLLA  117
              I  K+ +L + +  +  R+++ + QL A++ + KALG++YVVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AQPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADSLRSDLREKNIPYTNVNKIANYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A+        + +++ LR  ++ Y ++ +++N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IRFRDAASRDAAVKWLSSRHQDLVINSS---GDDALRATMTDARLSEAREYAVQQNITIL  234
            + F D A R+ A   +     D+ I ++   G   LR ++T A+L+E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDPTAAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL   + D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKDMRDG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDGAGGNI  352
                 G +E+ + R+G RP     R +I+TGD++TD+ +S DE  +PQVNI+LDG GG++
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++A IQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWGL  461
            LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP++G +NIT+G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  VASILFMVLYYKKVGLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
            +   LF++  Y+  GLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIGTGSIKGFAIT  581
            VLI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGIATSMFTSIVGTRAIINLMYGGKRIKKL  613
             ++GI TSMFT+I+ TRA++NL+YGG+ +KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

97) secD in NC_016816


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  445 bits (1677),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 302/632 (48%), Positives = 460/632 (73%), Gaps = 31/632 (4%)

Query  1    MLNRYPLWKYIMlvvvlviglvYALPNLYGEDPAVQITGARGS-AASEQTLDQIQNVLKQ  59
            MLN+YPLWKY++++ VLV+G++Y+ PNLY +D+A+QI+GA  +   ++  +D+  + L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSVALENGAITA--RFANTDVQLRAREAIMKALGENYVVALNLAPATPRWLTLLA  117
              I  K+ +L + +  +  R+++ + QL A++ + KALG++YVVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AQPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADSLRSDLREKNIPYTNVNKIANYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A+        + +++ LR  ++ Y ++ +++N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IRFRDAASRDAAVKWLSSRHQDLVINSS---GDDALRATMTDARLSEAREYAVQQNITIL  234
            + F D A R+ A   +     D+ I ++   G   LR ++T A+L+E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDPTAAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL   + D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKDMRDG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDGAGGNI  352
                 G +E+ + R+G RP     R +I+TGD++TD+ +S DE  +PQVNI+LDG GG++
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++A IQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWGL  461
            LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP++G +NIT+G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  VASILFMVLYYKKVGLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
            +   LF++  Y+  GLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIGTGSIKGFAIT  581
            VLI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGIATSMFTSIVGTRAIINLMYGGKRIKKL  613
             ++GI TSMFT+I+ TRA++NL+YGG+ +KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

98) secD in NC_008577


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  445 bits (1676),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 301/630 (48%), Positives = 453/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +   R    L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+ +   LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRNNAQGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++ + ++ I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  ++         L+  ++ + L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRVPAGSEVYQRREGGQ--VVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG+    + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSNVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIESGVQAMIWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI  GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG++KGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRAIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TRA+VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

99) secD in NC_008800


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  445 bits (1675),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 301/632 (48%), Positives = 459/632 (73%), Gaps = 27/632 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALMAAMGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  A+GD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKTRDDAISYLSPRHRDLVIGS---NGSNTLKAVMSDDRLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ I +   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL  +  D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGSA  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----QEEVINVATIQSRLG  403
            MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++ATIQS LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  404  NSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLWGLAV  463
            + FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NIT+G++A LWG+  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  464  SILFMVVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVL  523
              LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  524  INERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVGTGSIKGFAITTA  583
            I  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T +
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  584  IGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
            +G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

100) secD in NC_008322


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  444 bits (1674),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 300/630 (48%), Positives = 453/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +   R    L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+ +   LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRNNAQGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++ + ++ I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  ++         L+  ++ + L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRVPAGSEVYQRREGGQ--VVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG+    + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSNVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIESGVQAMIWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI  GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG++KGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

101) secD in NC_016514


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  444 bits (1674),  Expect = 5e-126, Method: Compositional matrix adjust.
 Identities = 311/635 (49%), Positives = 461/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYIMLVAVILVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKSLQE  59
            MLN+YPLWKY++++AV++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREVLMGVLGDKYVVALNLAPATPRWLAALN  117
              I  K+ +L E +   L R+   + QL A++V+   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIAYTTVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GMSITFRDSAARDQAVDYLTQRHRDLVITS---QGSNQLRAVMTDARLKEAREYAVQQNI  231
             + + F D A R+QA   + +   D+ IT+   +G   LR  +T A+L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDQS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRIPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----EEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSILFMIFFYKKFGLIATSALVANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDA  520
            ++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

102) secD in NC_014500


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  444 bits (1672),  Expect = 7e-126, Method: Compositional matrix adjust.
 Identities = 303/633 (48%), Positives = 461/633 (73%), Gaps = 29/633 (4%)

Query  1    MLNRYPLWKYLMLIVTIVVGLLYALPNLYGEDPAIQVTGARGT-AASESTLVQIQNVLKE  59
            MLN+YPLWKY++++  +VVG++Y+ PNLY +D+AIQ++GA  +   +++ + +  + L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QNVASKSIALENGAI--LARFSTPDVQLRAREVLLNALGEKFVVALNLAPATPTWLRMLG  117
              ++ K+ +L + +   L R+S  + QL A++V+ +ALG+ +VVALNLA +TP WLR +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKGIQYASVRKSDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR   ++Y S+ + +N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  ILFRDGQLRDDAVTYLTSRHRDLVINAS---GSDTLRAVMSDARLREAREYAVQQNINIL  234
            + F D+  R++A + +     D+ I ++   G   LR  ++ A+L E REY+++QN+  +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDPVALS  294
            RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS----  295

Query  295  NGRVPGDTEVMNMRDGG--PVALYKRVILTGDHITDSTSGNDEYNRPQVNISLDSAGGNA  352
                 G TE+ + R+GG  + A+ + +I+TGD++TD+ ++ DE  RPQVNI+LD+ GG+ 
Sbjct  296  ----KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILEKQEEVINVATIQSRL  402
            MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS L
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPL  410

Query  403  GNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLA  462
            G+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A L G+ 
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  463  VSILFMIFFYKKFGMIATSALLLNLVLVVGIMSLLPGATLTMPGIAGIVLTLAVAVDANV  522
               LF++ +Y+ FG+IAT AL +N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  523  LINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGSIKGFAITT  582
            LI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  583  GIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

103) secD in NC_008260


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  444 bits (1671),  Expect = 8e-126, Method: Compositional matrix adjust.
 Identities = 312/622 (51%), Positives = 450/622 (73%), Gaps = 17/622 (2%)

Query  12   MTRYPRWKFFLLMAALVVCSLYALPNLYPDAPAIQISHSEAGGEVSAVARQRVLSaldaa  71
            + +YP WK+ L++A LVV  +Y+ PNLYPD +AIQIS + ++ +V+    +R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  72   glahgdgEVV--GSSLLVRMNDTEAQLRAKDIAASTLGDNYVVALNLAATTPQWLRDIGA  129
            G++   + +   G + L+R++  E QL AKD+   +LGD+YVVALNLA TTP+WLR++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  130  SPMNLGLDLRGGVHFLLQVDMDSVVKSRMEAWEGTAKLTLRDAGVRYREVSVDGTTLIAT  189
            +PM+LGLDL GGVHFLL+VDMD  + +R+   EG  K  LR   VRYR ++  G  +   
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  190  FGDQVaadaaraplrqaldKLAMQPA--GDSPRIVMTLNETALKEMQDYAVDQNRTALNK  247
            FGD+   + ARA +R+++  + + PA   + P + M+L  + L E+++Y++ QN T++ +
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  248  RVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRILGRTATLEFRLVDNSVSSARLRSG  307
            RVNELGVAE++VQRQGA+RIVV+LPG+QD+A A+RILG+TA LEFRL   +  S      
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK-----  296

Query  308  MAPPGLEFFPFKGQEGRIVALNKSSIATGDQVIDAKMGFDQQNGQPEVNVTLDSDGARRM  367
                  E F F+       A++++ I TGDQV DAK +FD++ G+P+VN+ LD++G+  M
Sbjct  297  ---GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELM  352

Query  368  QRVTGKNVGNPMGVLFIETKTDV---KKVIDEDGNSVEQMTSSTDKYVINVATIQSTLGS  424
             R T  NVG +M+V+FIE +      +++++   + V   T   DK +I++ATIQS LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  425  RFRITGLDNPaeaselalllragslaaPVSIVEERTVGPSLGAENIEAGLKSMALGLALV  484
            +FRITGL+  +E+SELALLLRAG+LAAP+ + EERT+GPSLGA+NI  G+ +   G+ +V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  485  LAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLI  544
              F++  Y+ FGLIA VAL  N+V+++++MSL+ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  545  FERIREDLRRGLSPRQAIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAVTLFI  604
            F RIRE++  G++ ++AI EG+ RA+T+ILDAN+TTL+V+ ILFA GTG+V+GFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  605  GILTSMFTAIIGTRAMAEMIYG  626
            GI+TSMFTAI+ TRAM ++IYG
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYG  613

104) secD in NC_015761


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1668),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 306/635 (49%), Positives = 460/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYIMLVAVIVVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++AV+VVG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKQDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDGKARDEAIAYLTPRHRDLVISS---QGDNALRAVMTDARLSEAREYAVQQNI  231
             + + F D+  R++A A +     D+ I++   +G   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----QEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA  520
            ++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANITTLIKVIILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

105) secD in NC_004347


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1670),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 295/630 (47%), Positives = 457/630 (73%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVVLIIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAS  59
            MLNKYP+WK ++++ ++ +G +Y+ PNL+ +D A+Q+ ++  A +VT +   R    L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKEVIAEALGDKFTVALNLAPATPKWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+V+  ALGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRINAQGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++   ++ I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQVKEEALQQNITTI  236
            + F D      A  +++    D  ++         L+  ++ + L +++E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVSEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADANAAQ  296
            RNRVNELGV+EP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  AGRVPAGSEVYQRREGGQ--VVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG+    + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSNVTKDNIGKPMATLFIEYKDS--------GERNADGSVKMLKIE-EVISVATIQARLG  405
             S  T+ N+G++MA +FIE + +           + D +V+ +K +  +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIASGINAMLWSMGA  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI+ G++A LW+M  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VVLFMLIYYRAFGLIANIALTMNLVMIVGVMSMIPGAVLTLPGIAGMVLTIGMAVDGNVL  524
            V LF++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIRDEIRAGRSVQQAIQEGYANAFSSIADSNITTFITALILFAVGSGAVKGFAVTLM  584
            I+ RIR+EI  G +VQ+AI EG+  A+++I D+N+TT++ + ILFA+G+G+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRAIVNAVWGGKRIQTL  614
            +GI TSMFTAI+ TRA+VN + GG+ ++ L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

106) Sbal175_1566 in NC_017571


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1667),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 303/630 (49%), Positives = 452/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQASVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+++  +LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRTNTTGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++      I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  +T A       L+  ++   L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRLPAGSEVYQRREGG--TVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG  +  + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSDVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIQNGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V LF++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

107) Sbal117_2925 in NC_017579


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1667),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 303/630 (49%), Positives = 452/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQASVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+++  +LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRSNTTGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++      I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  +T A       L+  ++   L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRLPAGSEVYQRREGG--TVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG  +  + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSDVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIQNGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V LF++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

108) secD in NC_009052


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1667),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 303/630 (49%), Positives = 452/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQASVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+++  +LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRSNTTGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++      I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  +T A       L+  ++   L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRLPAGSEVYQRREGG--TVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG  +  + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSDVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIQNGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V LF++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

109) secD in NC_009665


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1667),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 303/630 (49%), Positives = 452/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQASVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+++  +LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRSNTTGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++      I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  +T A       L+  ++   L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRLPAGSEVYQRREGG--TVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG  +  + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSDVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIQNGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V LF++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

110) secD in NC_009997


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1667),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 303/630 (49%), Positives = 452/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQASVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+++  +LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRSNTTGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++      I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  +T A       L+  ++   L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRLPAGSEVYQRREGG--TVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG  +  + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSDVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIQNGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V LF++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

111) Sbal678_2890 in NC_016901


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1667),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 303/630 (49%), Positives = 452/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQASVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+++  +LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRSNTTGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++      I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  +T A       L+  ++   L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRLPAGSEVYQRREGG--TVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG  +  + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSDVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIQNGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V LF++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

112) Sde_1407 in NC_007912


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1670),  Expect = 9e-126, Method: Compositional matrix adjust.
 Identities = 318/628 (51%), Positives = 471/628 (75%), Gaps = 13/628 (2%)

Query  1    MNRYPLWKYLLILAVVVIGFLYSLPNIYVPDPAIQISGIRSGVEVDANALNTATKALEEN  60
            +N+YPLWKY+LILAV+V+GF+YS PN+Y  D+AIQISG  ++++V    ++ A+KAL + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQYFGAEAGE--KSALIRFATQDDQLRARTIVQRALSQENYVVAFNLAPTTPQWLVDLG  118
            GI   ++  +E  K++L+R++ Q+DQL A+ +V++AL+ ++YVVA+NLA TTP+WL ++G
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALG-DDYVVALNLARTTPNWLRNVG  120

Query  119  AGPMSLGLDLAGGVHFLLEVDTESVLAKEMEGFEDDISGLIRKEKL-YGVSTRLTDGEIV  177
            A PM LGLDL+GGVHFLLEVD +  +   +  +E+++ +L+RKEK+ Y    +L +  I 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQ  179

Query  178  ITAdsddlrtdvllllkkelseletkrterGGKYIVTAVPSDAYIREKEKHAVQQNLTTL  237
            +  + D  R +   L++K ++++E   +E  G  ++    + A + E    +++QNLTT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNEIGVSEPLVQTQGRNRIVVQLPGIQDTARAKKILGKTANLEFRLEAPKDGLASQK  297
            RNRVNE+GV+EPLVQ QG NRIVV+LPG+QDTA AK+ILGKTANLEFRL A  D+  +  
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTT  299

Query  298  EHFEFRDEIKQARYGGAWLEKRPFVTGQNVTGATPGFDDQSNSPMVSISLDSKGAGLMHR  357
            E FEFR+  + A    A +E+  ++TG++VT+A ++FD+++  P V+I+LD+ G+ LM R
Sbjct  300  EMFEFREGGRPA----AAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGELMSR  354

Query  358  KTRKHVNESMAIVLIEYDTKV---REEVNEAGETVIVTEQVPNPKMVSLANINEALSKRF  414
             TR +V  SMA+++IE        R+ VN     V V     + K++SLA I+ +L+ +F
Sbjct  355  ATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQF  414

Query  415  QITGLDSPEEASELALYIRAGALAAPMSFVEERTIGASLGQENIDLGVKSVQLGLVLVLI  474
            +ITGL++  E+SELAL +RAG+LAAPM F EERTIG+SLG +NI  GV +   G+++V +
Sbjct  415  RITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSL  474

Query  475  FMMVFYKVFGFFanlalavnlmvlvavmSMFGATLTLPGIAGIVLTVGMAVDANVLIFSR  534
            F+M +Y+ FG++A +ALA N+++L+A+MS++GATLTLPGIAGIVLT+GMAVDANVLIFSR
Sbjct  475  FIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSR  534

Query  535  IKEELKAGSSSQTAINSGYDSAFSTILDANLTTFIVAIILYAIGSGPVKGFAVTLAIGII  594
            I+EE+  G + Q AI+ G+D A+++ILDANLTT++V+ IL+A+G+GPVKGFAVT+++GI+
Sbjct  535  IREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIF  594

Query  595  TSMFTAIVGTRALVNLAFGGRNVKKLWI  622
            TSMFTAI+ TRA+VNL +GGR+ KKLWI
Sbjct  595  TSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

113) secD in NC_008321


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  443 bits (1670),  Expect = 9e-126, Method: Compositional matrix adjust.
 Identities = 300/630 (48%), Positives = 452/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +   R    L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKETIAEELGDKFTVALNLAPATPQWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+ +   LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLREEKIRYAGIRNNAQGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++ + ++ I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSEIYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  ++         L+  ++   L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRVSAGSEVYQRREGGQ--VVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG+    + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSNVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIESGVQAMIWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI  GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG++KGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFTAI+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

114) NT01EI_1041 in NC_012779


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  442 bits (1665),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 451/635 (72%), Gaps = 30/635 (4%)

Query  1    MLNRYPLWKYIMLIVALVIGLLYALPNLYGEDPAVQITGAR-GVAASESTLVQVRDVLEK  59
            MLN+YPLWKY++++  LV+G++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QHIPSKSIALENGAI--LARFTDTDIQLRAREALVDTLGDKYVVALNLAPATPKWLAMVG  117
              IP K+ +L + +   L R++  + QL A++ +  +LGD YVVALNLA +TP+WL  VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGIPYSTIRKLPDPASG  177
            A PMKLGLDL GGVHFL++VDMD A+        + +++ LR   + Y ++ +L +    
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV---  177

Query  178  GVEINFrdaaardaaSDYLSPRHRDLVFSNV---GDTMLKAVMTDDRLREAREYAVQQNI  234
             +++ F D A R+ A   +     D+ ++     G  +L+  +T  +L E REY+++QN+
Sbjct  178  -IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  235  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDAQ  294
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  295  AAASGRVPGDSEVKYTRDGRPVVLYKR-VILTGDHITDSTSSQDEFNRPQVNISLDSAGG  353
            +++           +  +GRP     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG
Sbjct  297  GTTE-------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  354  SAMSNFTKDNIGKPMATLFVE------YK----DSGKKDASGKPILEKQEEVINVATIQS  403
              MS  T+ N+G++MA +F+E      Y     ++  KD + +  +  +  +I++ATIQS
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQS  408

Query  404  RLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLWG  463
             LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A LWG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  464  LIASIIFMVVFYKKFGLIATTALLANLVMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDA  523
            ++   +F++ +Y+ FGLIAT AL  N+VM++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  524  NVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAI  583
            NVLI  RI+EE+ NG TVQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  584  TTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI  618
            T ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

115) Sput200_2506 in NC_017566


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  442 bits (1663),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 300/630 (48%), Positives = 454/630 (73%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAG  59
            MLNKYP+WK ++++ ++ +G +Y+ PNL+ +D A+Q+ ++  A +VT +   R    L++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+ +   LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETIRYAGIRVNASGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ +A LR E +RY ++   ++ I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSNDMVFTDVSKGDDFALQAVMSEAYLKQVKEEALQQNITTI  236
            + F D      A  +++    D  +T     +   L+  ++ A L +++E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRISAGSEVYQRREGGQ--VVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG+    + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSNVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIENGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTSIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFT+I+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

116) secD in NC_009438


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  442 bits (1663),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 300/630 (48%), Positives = 454/630 (73%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAG  59
            MLNKYP+WK ++++ ++ +G +Y+ PNL+ +D A+Q+ ++  A +VT +   R    L++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+ +   LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETIRYAGIRVNASGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ +A LR E +RY ++   ++ I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSNDMVFTDVSKGDDFALQAVMSEAYLKQVKEEALQQNITTI  236
            + F D      A  +++    D  +T     +   L+  ++ A L +++E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRISAGSEVYQRREGGQ--VVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG+    + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSNVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIENGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTSIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFT+I+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

117) secD in NC_008750


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  441 bits (1662),  Expect = 4e-125, Method: Compositional matrix adjust.
 Identities = 300/630 (48%), Positives = 453/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQARVNELLAG  59
            MLNKYP+WK ++++ ++ +G +Y+ PNL+ +D A+Q+ ++  A +VT +   R    L++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+ +   LGD + VALNLA +TP+WL ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETIRYAGIRVNASGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ +A LR E +RY ++   ++ I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSNDMVFTDVSKGEDFALQAVMSEAYLKQVKEEALQQNITTI  236
            + F D      A  +++    D  +T         L+  ++ A L +++E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRISAGSEVYQRREGGQ--VVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG+    + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSNVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIENGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTSIVGTRSIVNAIWGGKRVKTL  614
            +GI TSMFT+I+ TR++VN I GG+  K L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

118) secD in NC_010554


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  440 bits (1659),  Expect = 7e-125, Method: Compositional matrix adjust.
 Identities = 292/632 (47%), Positives = 453/632 (72%), Gaps = 27/632 (4%)

Query  1    MLNRYPLWKYLMLIFAILIGLLYALPNLYGEDPAVQITGARGT-AANEQTLDQVRSLLDK  59
            MLN+YPLWKY++++  +++G++Y+ PNLY +D+A+QI+GA  +    +  +D+    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIEAKSIALENGAI--LARFSNPDIQLRAREALLPALGDKFVVALNLAPATPKWLEAIG  117
              I  K+ +L + +   L R+S+ + QL A++ +  ALGD +VVALNLA +TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNVDSLRTLLRDEGIPYSSIRKTDNYGVE  177
            + PMKLGLDL GGVHFL+EVDM+ A++       + +++LLR E + Y S+ + +N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IRFRNADDRSKASDYLARRNQDLIFRNGDNNS---LKAIFTDERLRDARTYAVQQNITIL  234
            + F +  +R +A   + +   D+ +  ++ N+   L+  +T  +L + R Y+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDPSALE  294
            RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  TGRIPGDSEV-KYTRDGRPTILYKR-VVLTGDHITDSTSQADEYGQPQVSISLDSAGGSI  352
                 G +E+  +  +GRP+    R +++TGD++TD+ +  DE G+PQV+I+LD+ GG +
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNVGKPMATLFVEYKDSG-----KRDENDRAILVK----NEEVINVANIQTRLG  403
            MS  T+ NVG++MA +F+E + +        +  ++ + V+    +  +I++A IQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  404  NNFRITGISNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNITQGLEACLWGLIA  463
            ++FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  464  SVAFMIIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVL  523
               F++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  524  INERIKEELRNGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTA  583
            I  RI+EE+ NG +VQ+AI EG+  A+++I+DANLTTL+ + IL+A+GTG++KGFA+T +
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  584  IGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI  615
            +G+ TSMFTAI+ TRA+VNL+YGG+ +KKL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

119) secD in NC_021082


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  440 bits (1658),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 286/633 (46%), Positives = 457/633 (73%), Gaps = 31/633 (4%)

Query  1    MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQ-QATPETLSQVQSTLSA  59
            MLN++PLWK ++++ V+ +G +Y+ PNLY DD+++QISG+    Q T   + +   +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   MNIQPKSAVLENGSI--LVRLESSEQQLPAKEKISEALGNNYSVALNLAPATPQWLSDIG  117
              I  K++ L + +   L+RL   E+QLPAK+ +  ALG++Y VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKLQYQAVKKGENFATE  177
            ++PMK GLDL GGV+FL+EVDM+ A+  +    ++ +++ +RKEK++Y+++ +  N   +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VEFADNDTAEKAVRLVRLSHPTLDILVNDN------KVTLTPSAQALSESRTMAIEQNLS  231
            + F+D+   E+A  LVR +   ++I   +       +++LTP+   L+E R  +I QNL+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAK--LAEIREYSIKQNLT  237

Query  232  ILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNTEANVAS  291
             +R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    +  + 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPD  293

Query  292  AAKGIVPADSGLQNTRDGE--PVVLRRKPSLGGEHIIDATSGTDERGLPQVSIRLDTEGG  349
             +KG     + + + R+G   +  + R   + G+++ DA ++ DE+G PQV+I LD +GG
Sbjct  294  DSKG----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  EMMGEITKMAIQKPMATLYTEFKDSG---RKDANG--KVI----LEKHQEVINVATIQTR  400
            E+M+  T+  + ++MA ++ E + +    R+  NG  K +    +  ++ +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  401  LGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVKQGMEASILGL  460
            LG+QF+ITG+N+ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+ +G++AS+ G+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  GLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVLAVGMSVDANV  520
             +  LF +A+Y+ FG++A++AL  NM++ ++LMSL+GATLT+PGIAGIVL++GM+VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGTGPVKGFAVTL  580
            LI+ RI+EEI NG  +Q+AI EG++ A+++I+D+NLTT+L + +L+++GTGPVKGFAVT+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  ALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI  613
            +LG++ SMFTAI  TR +VN +YGG+  KKLWI
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

120) D648_7150 in NC_020834


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  440 bits (1658),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 286/633 (46%), Positives = 457/633 (73%), Gaps = 31/633 (4%)

Query  1    MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQ-QATPETLSQVQSTLSA  59
            MLN++PLWK ++++ V+ +G +Y+ PNLY DD+++QISG+    Q T   + +   +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   MNIQPKSAVLENGSI--LVRLESSEQQLPAKEKISEALGNNYSVALNLAPATPQWLSDIG  117
              I  K++ L + +   L+RL   E+QLPAK+ +  ALG++Y VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKLQYQAVKKGENFATE  177
            ++PMK GLDL GGV+FL+EVDM+ A+  +    ++ +++ +RKEK++Y+++ +  N   +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VEFADNDTAEKAVRLVRLSHPTLDILVNDN------KVTLTPSAQALSESRTMAIEQNLS  231
            + F+D+   E+A  LVR +   ++I   +       +++LTP+   L+E R  +I QNL+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAK--LAEIREYSIKQNLT  237

Query  232  ILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNTEANVAS  291
             +R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    +  + 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPD  293

Query  292  AAKGIVPADSGLQNTRDGE--PVVLRRKPSLGGEHIIDATSGTDERGLPQVSIRLDTEGG  349
             +KG     + + + R+G   +  + R   + G+++ DA ++ DE+G PQV+I LD +GG
Sbjct  294  DSKG----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  EMMGEITKMAIQKPMATLYTEFKDSG---RKDANG--KVI----LEKHQEVINVATIQTR  400
            E+M+  T+  + ++MA ++ E + +    R+  NG  K +    +  ++ +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  401  LGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVKQGMEASILGL  460
            LG+QF+ITG+N+ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+ +G++AS+ G+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  GLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVLAVGMSVDANV  520
             +  LF +A+Y+ FG++A++AL  NM++ ++LMSL+GATLT+PGIAGIVL++GM+VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGTGPVKGFAVTL  580
            LI+ RI+EEI NG  +Q+AI EG++ A+++I+D+NLTT+L + +L+++GTGPVKGFAVT+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  ALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI  613
            +LG++ SMFTAI  TR +VN +YGG+  KKLWI
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

121) D650_20490 in NC_020833


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  440 bits (1658),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 286/633 (46%), Positives = 457/633 (73%), Gaps = 31/633 (4%)

Query  1    MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQ-QATPETLSQVQSTLSA  59
            MLN++PLWK ++++ V+ +G +Y+ PNLY DD+++QISG+    Q T   + +   +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   MNIQPKSAVLENGSI--LVRLESSEQQLPAKEKISEALGNNYSVALNLAPATPQWLSDIG  117
              I  K++ L + +   L+RL   E+QLPAK+ +  ALG++Y VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKLQYQAVKKGENFATE  177
            ++PMK GLDL GGV+FL+EVDM+ A+  +    ++ +++ +RKEK++Y+++ +  N   +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VEFADNDTAEKAVRLVRLSHPTLDILVNDN------KVTLTPSAQALSESRTMAIEQNLS  231
            + F+D+   E+A  LVR +   ++I   +       +++LTP+   L+E R  +I QNL+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAK--LAEIREYSIKQNLT  237

Query  232  ILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNTEANVAS  291
             +R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    +  + 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPD  293

Query  292  AAKGIVPADSGLQNTRDGE--PVVLRRKPSLGGEHIIDATSGTDERGLPQVSIRLDTEGG  349
             +KG     + + + R+G   +  + R   + G+++ DA ++ DE+G PQV+I LD +GG
Sbjct  294  DSKG----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  EMMGEITKMAIQKPMATLYTEFKDSG---RKDANG--KVI----LEKHQEVINVATIQTR  400
            E+M+  T+  + ++MA ++ E + +    R+  NG  K +    +  ++ +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  401  LGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVKQGMEASILGL  460
            LG+QF+ITG+N+ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+ +G++AS+ G+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  GLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVLAVGMSVDANV  520
             +  LF +A+Y+ FG++A++AL  NM++ ++LMSL+GATLT+PGIAGIVL++GM+VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGTGPVKGFAVTL  580
            LI+ RI+EEI NG  +Q+AI EG++ A+++I+D+NLTT+L + +L+++GTGPVKGFAVT+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  ALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI  613
            +LG++ SMFTAI  TR +VN +YGG+  KKLWI
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

122) Pat9b_0913 in NC_014837


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  439 bits (1654),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 302/635 (48%), Positives = 467/635 (74%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYIMlvvvilvgllYALPNLYGEDPAVQITGARGG-AASEQTLDQIQTALQK  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+GA  +   ++  +D+   AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSLVLENGA--VLARFANTDVQLRAREAITNVLGENYVVALNLAPATPRWLSLLA  117
              I  K+  L + +   L R+++ + QL A++ + + LG++YVVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTAL-SKLQEQNADGLRSDLRDKGIPYVNVNKIANYGV  176
            A PMKLGLDL GGVHFL+EVDMD A+ ++L+  +++ +++ LR   + Y ++ +++N  +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGE-VKALLRKEKVRYRSLPQLGN-VI  178

Query  177  EIRFRDGTSRDAAISYLSSRHQDLVISS---QGSDTLRAVMTDARLSEAREYAVQQNINI  233
            ++ F D++ R+ A + +     D+ I++   +G   LR  +T A+L+E REY+++QN+  
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTTVDPSAA  293
            +RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        +A
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GA  290

Query  294  ASGRVPGDSEVKMTREG-QPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDGAGGN  351
            +++   G +E+   REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LDG GG+
Sbjct  291  GPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  352  IMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQS  400
            +MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++A IQS
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQS  408

Query  401  RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP++G +NIT+G++A LWG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LIASIIFMVVFYKKFGLIATSALLCNLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDA  520
            ++   +F++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAI  580
            NVLI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTAIGIATSMFTAIVGTRAIVNLVYGGKRINKLSI  615
            T ++GI TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

123) secD in NC_021521


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  439 bits (1652),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 296/630 (47%), Positives = 460/630 (74%), Gaps = 24/630 (3%)

Query  1    MLNRFPLWKNLMVILVVAIGILYALPNLYGEDPSVQVSGTRGQ-QASDETLTQVQSALAS  59
            MLN++PLWK ++++ V+ +G++Y+ PNLY +D+++Q+SG+    Q ++  + +   AL+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   LNITPKAMNLENGSI--LVRLNKDEEQLPAKEKIAEVLGNNYSVALNLAPATPEWLTSIG  117
              I  KA +L + +   L+RL+K+E+QLPAK+ +   LG++Y VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GEPMKRGLDLRGGVRFLMEVDMNTALAKQQDQLQDTLRNDFRKEKWQYKAVKKAENFATD  177
            + PMK GLDL GGV+FL+EVDM+ A+  +    ++ ++  +RKEK +Y+++ +  N   +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VEFNDTDTADKAVRYIRRTNPNLEAT---YISPTVVRFAQSAQGLATSRDLAIEQNLSIL  234
            + F D    ++A   +R+T  ++E T     +  V+R A ++  LA  R+ +I QNL+ +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEILGATATLEFRLVNGNANLESAA  294
            R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL  G  +    +
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD----S  295

Query  295  RGIVPADSEIKYSRDGMPTV-LYRKTILGGEHIINATSGKDERGLPNVSINLDAQGGDLM  353
            +G   +   + +  +G P+  + R  I+ G+++ +A ++ DE+G P+V+INLD++GG+LM
Sbjct  296  KG---TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  354  SNATKSAVGKPMATLYSEFKDSG---RRDANG---KVILEKHEE---VINVATINSRLGS  404
            S AT+S VG++MA ++ E + +    R+  NG    V ++   E   +I++ATI+S LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  405  SFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAQGMDASMLGLGLT  464
             F+ITG+N+ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+++G+DAS+ G+ + 
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  465  ILFCVVYYKVFGlfataallanlvlTIGLMSLIGATLTMPGIAGIVLAVGMSIDANVLIY  524
             LF +  Y+ FGL+AT AL  N+V+ ++LMSL+GATLT+PGIAGIVL++GM++DANVLI+
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  525  ERIKEEIRNGRSIQQAIHEGYNGAFTSIFDSNLTTILVAIILYSVGTGPVKGFAVTLALG  584
             RI+EEI NG ++Q+AI EG++ A+T+I+D+NLTT+LV+ IL+++GTGPVKGFAVT++LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  585  VMISMFTAITGTRMLVNLVYGGKRVKKLWI  614
            +  SMFTAI  TR +VNL+YGG+  KKLWI
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

124) secD-1 in NC_014012


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  438 bits (1650),  Expect = 4e-124, Method: Compositional matrix adjust.
 Identities = 297/629 (48%), Positives = 453/629 (73%), Gaps = 24/629 (3%)

Query  1    MLNKYPMWKNVMVICIIAVGFFYAIPNLYSEDYAVQVVGTRGA-EVTVATQSAVNDVLTS  59
            MLNKYP+WK V+++ ++ VGF+Y+ PNLY++D A+Q+ G+  A +VT A        LT 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNITVKRSELENGQL--LVRVMDGDQQLLAKEAIADALGDKYTVALNLAPATPEWLEAMG  117
              I VK S L +     L+R+   ++QL AK+ +  ALGD Y VALNLA +TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKLGLDLRGGVHFLMEVKMGEAVRKMVESKMADFRTDLRGERIRYAGIRESAKGIEI  177
            ++PMKLGLDL GGVHFL+EV M+ A+   +    ++ ++ LR E++RY ++ + ++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  KFRDADNLAKAERFLKSRGNDMVFTDSSSDGNYYLIANLSETYLKQVKEEALQQNITTIR  237
             F D  +  +A  +++    D  +T +  +G   L   L+ + L +++E +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADAAAIAS  297
            NRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++     D+     
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-----  295

Query  298  GRISANAKIYDRRQGGQ--VALYKEVMLSGTHIQGAQPSFDEYSRPQVSINLDSKGGSIF  355
                + + +++ R+GG+   A+ + ++++G ++ +A++SFDE +RPQV+INLD+ GG + 
Sbjct  296  ---KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  SNVTKDNIGKPMATLFIE------YKDNGAKNPDGSIKLERIEE---VISVATIQARLGR  406
            S  T+ N+G++MA +FIE      Y  +  +  +  + ++ + E   +IS+ATIQ+ LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  NFVITGLD-HSEaqnlalllragaliaPVVIVEERTIGPSLGAQNIQNGMEAMIWGMAVV  465
            +F ITGL+ ++E+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +G++A +WGM  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  466  LIFMLVYYRAFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLI  525
             +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  526  YERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMI  585
            + RIREE+ NG +VQ+AI EG++ A+++I DAN+TT++ + ILFA+GTG+VKGFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  586  GIATSMFTAIVGTRAIVNAVWGGKRVKKL  614
            GI TSMFTAI+ TRA+VN + GG+  KKL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

125) secD in NC_018692


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  437 bits (1644),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 296/629 (48%), Positives = 461/629 (74%), Gaps = 26/629 (4%)

Query  1    MLNKNSIWKVLSALIVVAVCALYALPNIYGEDHAVQISAGRDAV-VTDATVEQVKAALSE  59
            MLNK ++WK +  L V+ V  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENEQI--LVRVSDSDTQLVTRETLEKALGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + KALGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVIAKSLEDAEGGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   EG  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDALDKAEFFLRNQSRDLTFN--QVDDLT-LRAIFAESKLQEIRDNAVKQNITIIR  234
             F D+   ++A  ++R+   D+ +   +++++  LR  ++ +KL EIR+ ++KQN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQKNDIRDALN  294
            NRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  295  GRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISLDSEGGNKM  352
                  ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+LD++GG+ M
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  353  SRSTRGNIGKPMATVFIEYKST--------GERNKDGKL-VFEKHEQVISVATIRAQLGS  403
            SR+TR+N+G++MA +FIE ++T           +KD  +  F  + ++IS+ATI++ LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  404  KFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQAIMYGLAAV  463
            +F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A + G+  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLI  523
             +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  YERIREEIRDGRSPQQAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMI  583
            + RIREEI +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+KGF++T+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIATSMFTAILVTRVIVNAVWGGRRVEKL  612
            GI TSMFTAI+VTR +VN + GGR   KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

126) WQG_15460 in NC_020515


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  437 bits (1645),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 287/632 (46%), Positives = 460/632 (73%), Gaps = 28/632 (4%)

Query  1    MLNRFPLWKNLMVILVIAIGALYALPNLYGEDPSVQISGTRGQ-QTSQETLTQVQSALSA  59
            MLN++PLWK ++++ V+ +G +Y+ PNLY +D+++QISG+    Q +Q  + +   AL+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   LNITPKAMSLENGSI--LVRLNKDEEQLPAKEKIAEVLGNNYSVALNLAPATPEWLTSIG  117
              I  KA SL + +   L+RL+K+E+QLPAK+ +   LG++Y VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GEPMKRGLDLRGGVRFLMEVDMNTALTKQQDQLQDSLRAIFRKDNIETKSFKKVDNFGTE  177
            + PMK GLDL GGV+FL+EVDM+ A+  +    ++ ++A++RK+++  +S+ +++N   +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IEFNDENGAEKAVRYIRRTYPTLDVL---LTSTNVAVLTPSAQGLSESRDLAIEQNLTIL  234
            + F D+   E+A   +R+T+  +++    L +  V  ++ ++  L+E R+ +I QNLT +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEILGATATLEFRMVNQEADLGQAS  294
            R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK ILG TA LEFR+     D    S
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD----S  295

Query  295  RGIVPLNSELKYD-RHGGPVVLRMRPSL--GGEHIINAKSGIDERGLPQVSIELDSEGGS  351
            +G   +     ++ R+GG     +  +L   G+++ +AK+++DE+G PQV+I+LD++GG 
Sbjct  296  KGTTEM-----FEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  352  LMGEITKSEVGKPMATLYSEFKDSGK--RDANGKV-------ILEKHEEVINVATINSRL  402
            LM+  T+S+VG++MA ++ E + +    R+    V        +  +  +I++ATI+S L
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  403  GSHFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNIAQGMEAGLLGLS  462
            GS+F+ITG+N+ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADNI++G++A+L G+ 
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  463  LTLIFCLVYYKVFGIFASMALIVNLILTVGLMSLIGATLTMPGIAGIVLAVGMSIDANVL  522
            +  +F +  Y+ FG++A++AL  N+++ ++LMSL+GATLT+PGIAGIVL++GM++DANVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  523  IYERIKEEMRNGRSIQQAIHEGYDGAFSSIFDSNlttiltslilYAVGTGPVKGFAVTLA  582
            I+ RI+EE+ NG ++Q+AI EG+D A+++I+D+NLTT+L + IL+A+GTGPVKGFAVT++
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  583  LGVMISMFTAITGTRMLVNWVYGGKRVKKLWI  614
            LG+  SMFTAI  TR +VN +YGG+  KKLWI
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

127) secD in NC_018678


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  437 bits (1647),  Expect = 6e-124, Method: Compositional matrix adjust.
 Identities = 296/629 (48%), Positives = 462/629 (74%), Gaps = 26/629 (4%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTDATVEQVKAALSE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENEQI--LVRVSDSDTQLVTRETLEKALGDDYYVAMNLAPDTPEWLEDLG  117
              I+ K   + ++    L+R+S  + QL +++ + KALGDDY VA+NLA  TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVIAKSLEDAEGGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   EG  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDALDKAEFFLRNQSRDLTFN--QVDDLT-LRAIFAESKLQEIRDNAVKQNITIIR  234
             F D+   ++A  ++R+   D+ +   +++++  LR  ++ +KL EIR+ ++KQN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQKNDIRDALN  294
            NRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  295  GRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISLDSEGGNKM  352
                  ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+LD++GG+ M
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  353  SRSTRGNIGKPMATVFIEYKST--------GERNKDGKL-VFEKHEQVISVATIRAQLGS  403
            SR+TR+N+G++MA +FIE ++T           +KD  +  F  + ++IS+ATI++ LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  404  KFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQAIMYGLAAV  463
            +F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A + G+  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLI  523
             +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  FERIREEIRDGRSPQHAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMI  583
            F RIREEI +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+KGF++T+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIATSMFTAILVTRVIVNAVWGGRRVEKL  612
            GI TSMFTAI+VTR +VN + GGR   KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

128) secD in NC_008309


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  437 bits (1647),  Expect = 6e-124, Method: Compositional matrix adjust.
 Identities = 293/633 (47%), Positives = 454/633 (72%), Gaps = 32/633 (5%)

Query  1    MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRG--QTADINVLTNVQTLLE  58
            MLN+YPLWK ++++ V+ +G +YS PNLY +D+A+QISG+    Q ++ +V       L 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADV-DRAAKALT  59

Query  59   QNNLPIKSIILENGSI--LARFNNTDDQLLAKDKIIEQLGNNYSVALNLAPATPKWLTNI  116
            +  +P+K+  L + +   L R+++ +DQL AKD +   LG++Y VALNLA +TP+WL N+
Sbjct  60   DAGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGRPMKWGLDLRGGVRFLMEVDMHTALDKRQEQLQDSLRTELRKEKYQYTSIRNGENFTT  176
            G+ PMK GLDL GGV+FL+EVDM+ A+D R    ++ +++ LRKEK +Y S+ +  N   
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  LITLAKPEQLSDVQRFLRKQHQNLNVNAI---SENTLSLELSENALREIRDHAIEQNLSI  233
            L  ++   +  + + ++RK   ++++ +    +   L + L+   L EIR+ +I QNL+ 
Sbjct  180  L-GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRRRVEELGVAEPVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNQNANLDVA  293
            +R RV+ELGVAEP++QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL     +    
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD----  294

Query  294  LRGMVPSDSEV-KYDRNGSPIVLYRRA-VLGGEHITNASSGIDQNTGSPQVSVTLDSEGG  351
                  + +E+  +   G P     R+ ++ G+++T+A +++D++ G PQV++ LD++GG
Sbjct  295  ----SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGG  349

Query  352  EIMSQTTKLNLKKPMATLYVE------YK----DSGKKDEHGKTILAKHEEVINVATIQG  401
            E+MS++T+ N+ ++MA +++E      Y     ++  KD   +T +  +  +I++ATIQ+
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQS  408

Query  402  RFGSQFQITGINSPAEAQNLAVLLRSGALTAPIQIIEERTVGPSLGAQNVEQGLKAGLWG  461
             +GSQF+ITG+N+ +E+ +LA+LLR+G+L+AP+ + EERT+GPSLGA+N+ +G+ A+LWG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  462  LAITIIFILFYYKLFGLFASIALIANMVLLVGIMSLLPGATLTMPGIAGIVLSVGMSVDA  521
            + +  +FI+  Y++FGL+A++AL  NMV+L+++MSLL GATLT+PGIAGIVL++GM+VDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  522  NVLIFERIKEEINNGRTIQQAINEGYSGAFTSIFDANLTTILTSVVLYAVGTGPVKGFAI  581
            NVLIF RI+EEI NG T+Q+AI+EG+  A+T+I+DANLTT+L + +L+A+GTGPVKGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  582  TLSLGVAISMFTAITGTRFLVNLIYGGKRVEKL  614
            T+SLG+  SMFTAI  TR +VNLIYGG+   KL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

129) secD in NC_002940


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  437 bits (1647),  Expect = 6e-124, Method: Compositional matrix adjust.
 Identities = 286/634 (46%), Positives = 462/634 (73%), Gaps = 32/634 (5%)

Query  1    MLNRFPLWKNLMIIFVIIIGGLYALPNLYGEDPSVQISGTRGQ-EASSETLAHVQETLSS  59
            MLN++PLWK ++I+ V+++G +Y+ PNLY +D+++QISG+    + +   + +   +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   MNITLKSAVLENGSI--LVRLTNDEQQLPAKEKISEVLGDKFSVALNLAPATPVWLSNIG  117
              I +K++ L + +   L+RL+++E+QLPAK+ +   LGD + VALNLA +TP WL N+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKRGLDLRGGVRFLMEVDMNTALVKQQETLQDSLRTELRKEKLQYKAIKKGDNFTTQ  177
            ++PMK GLDL GGV+FL+EVDM+ A+  +    ++ +++ LRKEK++Y+++ + +N   Q
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IEFANNDIAEKAARFIKRNHAYLETKFITASEVAFTP------SETALAKSRDTAIEQNL  231
            + F+++   E+A  ++++  + +E   IT++E+   P      + + LA  R+ +I QNL
Sbjct  180  LGFGDDAEREQARALVRKTFTDFE---ITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEANVE  291
            + +R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL  +  +  
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  292  SATRGIVPADSELKHTRDG--RAVVLRRKPSLGGEHIVDATSGKDERGLPQVSIHLYAKG  349
            ++T        E+ + R+G   A  + R   + G+++ DA ++ DE+G PQV+I+L + G
Sbjct  297  GTT--------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNMMADITKSAVGRPMATLYSEFKDSG---RKDANG---KVILEKHEE---VINVATINS  400
            G++M+  T+S VGR+MA ++ E + +    R+  NG    V ++   E   +I++ATI+S
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGSQFQITGIDSTAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGIYG  460
             LGSQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN++KG++A++ G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LILTIVFCLIYYKVFGIFATAALLVNMVLTIGLMSLIGATLTMPGIAGIILAVGMSVDAN  520
            +++  +F +  Y+ FG++AT AL  NMV+ ++LMSL+GATLT+PGIAGI+L++GM+VDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  521  VLIYERIKEELRNGRSIQQAINEGYNGAFTSIFDSNLTTILTSLVLYSVGTGPVKGFAIT  580
            VLI+ RI+EE+ NG ++Q+AI+EG++ A+T+I+D+NLTT+L + +L+++GTGPVKGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  581  LALGVMISMFTAITGTRMLVNWIYGGKRVKKLWI  614
            ++LG+  SMFTAI  TR +VN IYGG+  KKLWI
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

130) secD in NC_006300


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  437 bits (1646),  Expect = 8e-124, Method: Compositional matrix adjust.
 Identities = 281/630 (45%), Positives = 450/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNRYPLWKNLMVILVIAIGVLYALPNIYGEDPAVQISGTRGQ-TATETTLTDVQTLLTS  59
            MLN+YPLWK ++++ V+ +G +Y+ PN+Y +D+A+QISG+      T++ +      LT 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NQLEPKSIKLEEGSI--LARFHNTDDQLLAKDKITEKLGQSYSVALNLAPSTPAWLSSIG  117
              +  K+  L E +   L R+ + +DQL AKD +   LG+ Y VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKWGLDLRGGVRFLMEVDMNTALSKRQEQLQDSLRTELRKEKIQYSAIKNTDNFGTG  177
            + PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK++Y ++ + +N    
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VTLVKPEQLSDAGRFLRKQHPNLNITES---ADNTLNLALSEQALTEARENAVEQNLGIL  234
            + +    +  +A  ++RK   +++IT +   +   L +AL+   L+E RE ++ QNL  +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RKRVEELGVSEAVIQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNQNVSPEAMV  294
            R+RV+ELGV+E+++QRQGA+RIVVELPG+QDTA AK ILG TA LEFRL     +P+   
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGPD---  293

Query  295  RNIVPTDTEVKFMRDGQPVALFKRA-VLGGEHITNASSGLDQQTSRPQVSVTLDSEGGEI  353
             +   T     F  +G+P A   R+ ++ G+++T+A +++D++ +RPQV++ LD++GGE+
Sbjct  294  -DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGEL  351

Query  354  MADTTRLNIKKPMATLYVE------YKD---SGKKDENGKVILEKHEEVINVATIQGRFG  404
            M+ +TR N+ ++MA +++E      Y     +G   +     +  +  +I++ATIQ+ +G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  405  SQFQITGIDSPAEAQNLSVLLRSGALTAPIQIVEERTVGPSLGAQNVAQGLNAGLWGLAI  464
            SQF+ITG+++ +E+ +L++LLR+G+L+AP+ + EERT+GPSLGA+N+++G++A+LWG+ +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VIVFCLVFYKVFGLVASLALCANMVLVVGLMSLLPGATLTMPGIAGIILSVGMSVDANVL  524
            V +F + +Y+ FGL+A++AL  NMV++++LMSLL GATLT+PGIAGI+L++GM+VDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IFERIKEELRNGRPIQQAINEGYNGAWTSIFDANLTTILTSIVLYAVGTGPVKGFAVTLA  584
            IF RI+EE+ NG  +Q+AI+EG++ A T+I+DANLTT+L + +L+A+GTGPVKGFAVT++
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  LGVAISMFTAITGTRMLINWIYGGKRVEKL  614
            LG+  SMFTAI  TR ++N IYGG+   KL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

131) secD in NC_010334


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  437 bits (1645),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 294/629 (47%), Positives = 452/629 (72%), Gaps = 24/629 (3%)

Query  1    MLNKYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQVVATRGA-EVSASTLSTVNEVLKS  59
            MLNKYP+WK ++++ ++ +G +Y+ PNL+ +D A+Q+ ++  A +V+ + +      L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELENGQL--LVRLNNGEEQLVAKEIISDALGDKYTVALNLAPATPEWLEAMG  117
             GI+VK S L +     L+RL++ E+QL AK+++  ALGD Y VALNLA +TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRAEKIRYAGIRNGAKGIEI  177
            ++PMKLGLDL GGVHFL+EVDM+ A+        ++ ++ LR EK+RY ++ + ++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  KFRDAETLTKAENFLKSRSNDMVFVDKTVGDDYVLVANPSEAYLKQVKEEALQQNITTLR  237
             F D     +A  +++    D  +    + +  VL    + A L +++E +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDQKADVQAAMS  297
            NRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK IL+ TA++EF++     D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  298  GRVPAGSELYQRRTGG--PVVLKKAVMLTGDHIQGAQPSFDEYSRPQVSINLDAKGGSIF  355
                  +E+++ R GG  +  + +++++TGD++ +A++SFDE +RPQV+INLD+ GG + 
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  SNVTKDNIGNPMATLFIE------YKDTGEKNADGSVKMKKIEE---VISVATIQARLGR  406
            S  T+ N+G +MA +FIE      Y     +  +  V ++ + E   +IS+ATIQ+ LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  NFVITGLE-HAEaqnlalllragaliaPVYIVEERTIGPSLGQENIENGMQAMIWGMAVV  465
            +F ITGL+ ++E+ +LALLLRAG+L AP+Y+ EERTIGPSLG +NI +G++A +WGM  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  466  LIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLI  525
             +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  526  YERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMI  585
            + RIREE+ NG +VQ+AI EG++ A+++I DAN+TT++ + ILFA+GTG+VKGFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  586  GIATSMFTCIVGTRSIVNAIWGGKRVKKL  614
            GI TSMFT I+ TR++VN I GG+  KKL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

132) secD in NC_018632


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  436 bits (1643),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 296/629 (48%), Positives = 461/629 (74%), Gaps = 26/629 (4%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTDATVEQVKAALSE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENEQI--LVRVSDSDTQLVTRETLEKALGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + KALGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVIAKSLEDAEGGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   EG  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDALDKAEFFLRNQSRDLTFN--QVDDLT-LRAIFAESKLQEIRDNAVKQNITIIR  234
             F D+   ++A  ++R+   D+ +   +++++  LR  ++ +KL EIR+ ++KQN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQKNDIRDALN  294
            NRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  295  GRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISLDSEGGNKM  352
                  ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+LD++GG+ M
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  353  SRSTRGNIGKPMATVFIEYKST--------GERNKDGKL-VFEKHEQVISVATIRAQLGS  403
            SR+TR+N+G++MA +FIE ++T           +KD  +  F  + ++IS+ATI++ LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  404  KFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQAIMYGLAAV  463
            +F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A + G+  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLI  523
             +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  FERIREEIRDGRSPQHAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMI  583
            F RIREEI +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+KGF++T+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIATSMFTAILVTRVIVNAVWGGRRVEKL  612
            GI TSMFTAI+VTR +VN + GGR   KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

133) secD in NC_010519


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  436 bits (1643),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 292/632 (47%), Positives = 452/632 (72%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRG--QTADINVLTNVQTLLE  58
            MLN+YPLWK ++++ V+ +G +YS PNLY +D+A+QISG+    Q ++ +V       L 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADV-DRAAKALT  59

Query  59   QNNLPIKSIILENGSI--LARFNNTDDQLLAKDKIIEQLGNNYSVALNLAPATPKWLTNI  116
            +  +P+K+  L + +   L R+++ +DQL AKD +   LG++Y VALNLA +TP+WL N+
Sbjct  60   DAGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGRPMKWGLDLRGGVRFLMEVDMHTALDKRQEQLQDSLRTELRKEKYQYTSIRNGENFTT  176
            G+ PMK GLDL GGV+FL+EVDM+ A+D R    ++ +++ LRKEK +Y S+ +  N   
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  LITLAKPEQLSDVQRFLRKQHQNLNVNAI---SENTLSLELSENALREIRDHAIEQNLSI  233
            L  ++   +  + + ++RK   ++++ +    +   L + L+   L EIR+ +I QNL+ 
Sbjct  180  L-GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRRRVEELGVAEPVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNQNANLDVA  293
            +R RV+ELGVAEP++QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL     +    
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS---  295

Query  294  LKGMVPSDSEVKYDRNGSPIVLYRRA-VLGGEHITNASSGIDQNTGSPQVSVTLDSEGGE  352
             KG   +     +   G P     R+ ++ G+++T+A +++D++ G PQV++ LD++GGE
Sbjct  296  -KG---TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGE  350

Query  353  IMSQTTKLNLKKPMATLYVE------YK----DSGKKDEHGKTILAKHEEVINVATIQGR  402
            +MS++T+ N+ ++MA +++E      Y     ++  KD   +T +  +  +I++ATIQ+ 
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSP  409

Query  403  FGSQFQITGINSPAEAQNLSVLLRSGALTAPIQIIEERTVGPSLGAQNVEQGLKAGLWGL  462
            +GSQF+ITG+N+ +E+ +L++LLR+G+L+AP+ + EERT+GPSLGA+N+ +G+ A+LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  AITIIFILFYYKLFGLFAGIALIANMILLVGIMSLLPGATLTMPGIAGIVLSVGMSVDAN  522
             +  +FI+  Y++FGL+A +AL  NM++L+++MSLL GATLT+PGIAGIVL++GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEINNGRTIQQAINEGYSGAFTSIFDANLTTILTSVVLYAVGTGPVKGFAIT  582
            VLIF RI+EEI NG T+Q+AI+EG+  A+T+I+DANLTT+L + +L+A+GTGPVKGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRFLVNLIYGGKRVEKL  614
            +SLG+  SMFTAI  TR +VNLIYGG+   KL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

134) secD in NC_011663


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 303/632 (48%), Positives = 452/632 (72%), Gaps = 26/632 (4%)

Query  1    MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGA-EVTASTQASVNELLAS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELE---KGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKLLESM  116
             GI+VK S L    KG LL R+ + ++QL AK+++  +LGD + VALNLA +TP+ L ++
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRTNTTGIE  176
            G++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++      I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTI  236
            + F D      A  +++    D  +T A       L+  ++   L +I+E +++QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQ  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++  +  D++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  297  SGRLPAGSEVYQRREGG--TVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTI  354
                   +E+++ REGG  +  + + +++TGD++T+A++SFD+ +RPQV+INLD+ GG +
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSDVTKDNIGKPMATLFIE------YKDSGERNADGSVKMQKIQE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y        +  V +Q ++E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVITGLS-HGEaqnlalllragaliaPVSIVEERTIGPSLGAENIQNGVQAMVWGMAV  464
             +F ITGL+ +GE+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V LF++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLM  584
            I+ RIREE+  G +VQ+AI EG++ A+++I DAN+TT+L + ILFA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI  616
            +GI TSMFTAI+ TR++VN I GG+  K L I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

135) secD in NC_017531


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  435 bits (1640),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 295/624 (48%), Positives = 456/624 (74%), Gaps = 33/624 (5%)

Query  1    MLVVVLVIGLVYALPNLYGEDPAVQITGARGS-AASEQTLDQIQNVLKQDNIQSKSVALE  59
            +++ VLV+G++Y+ PNLY +D+A+QI+GA  +   ++  +D+  + L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAITA--RFANTDVQLRAREAIMKALGENYVVALNLAPATPRWLTLLAAQPMKLGLDLR  117
            + +  +  R+++ + QL A++ + KALG++YVVALNLA +TP WL  ++A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTAL-SKLQEQNADSLRSDLREKNIPYTNVNKIANYGVEIRFRDAASRD  176
            GGVHFL+EVDMD A+ ++L+  +++ +++ LR  ++ Y ++ +++N  +++ F D A R+
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGE-VKALLRKEKVRYRSLPQLGN-VIQLGFGDDAERE  189

Query  177  AAVKWLSSRHQDLVINSS---GDDALRATMTDARLSEAREYAVQQNITILRNRVNQLGVA  233
             A   +     D+ I ++   G   LR ++T A+L+E REY+++QN+T +RNRVN+LGVA
Sbjct  190  QARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVA  249

Query  234  EPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDPTAAASGRVPGDSEV  293
            EPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL   + D+         G +E+
Sbjct  250  EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEM  301

Query  294  KDMRDG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDGAGGNIMSNFTKDNIG  351
             + R+G RP     R +I+TGD++TD+ +S DE  +PQVNI+LDG GG++MS  T+ N+G
Sbjct  302  FEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVG  361

Query  352  KPMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSRLGNSFRITGI  400
            ++MA +F+E      Y     ++  KD   +++  K++  +I++A IQS LG+ FRITG+
Sbjct  362  RSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRITGL  419

Query  401  SNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWGLVASILFMVLY  460
            +   E+ +L+LLLRAG+L AP+ + EERTIGP++G +NIT+G++A LWG++   LF++  
Sbjct  420  NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI  479

Query  461  YKKVGLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEE  520
            Y+  GLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE
Sbjct  480  YRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREE  538

Query  521  LRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIGTGSIKGFAITTAIGIATSMF  580
            + NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMF
Sbjct  539  IANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMF  598

Query  581  TSIVGTRAIINLMYGGKRIKKLSI  604
            T+I+ TRA++NL+YGG+ +KKL I
Sbjct  599  TAIMVTRAMVNLIYGGRDFKKLWI  622

136) PAGR_g3240 in NC_017554


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  435 bits (1640),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 295/624 (48%), Positives = 456/624 (74%), Gaps = 33/624 (5%)

Query  1    MLVVVLVIGLVYALPNLYGEDPAVQITGARGS-AASEQTLDQIQNVLKQDNIQSKSVALE  59
            +++ VLV+G++Y+ PNLY +D+A+QI+GA  +   ++  +D+  + L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAITA--RFANTDVQLRAREAIMKALGENYVVALNLAPATPRWLTLLAAQPMKLGLDLR  117
            + +  +  R+++ + QL A++ + KALG++YVVALNLA +TP WL  ++A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTAL-SKLQEQNADSLRSDLREKNIPYTNVNKIANYGVEIRFRDAASRD  176
            GGVHFL+EVDMD A+ ++L+  +++ +++ LR  ++ Y ++ +++N  +++ F D A R+
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGE-VKALLRKEKVRYRSLPQLGN-VIQLGFGDDAERE  189

Query  177  AAVKWLSSRHQDLVINSS---GDDALRATMTDARLSEAREYAVQQNITILRNRVNQLGVA  233
             A   +     D+ I ++   G   LR ++T A+L+E REY+++QN+T +RNRVN+LGVA
Sbjct  190  QARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVA  249

Query  234  EPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDPTAAASGRVPGDSEV  293
            EPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL   + D+         G +E+
Sbjct  250  EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEM  301

Query  294  KDMRDG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDGAGGNIMSNFTKDNIG  351
             + R+G RP     R +I+TGD++TD+ +S DE  +PQVNI+LDG GG++MS  T+ N+G
Sbjct  302  FEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVG  361

Query  352  KPMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSRLGNSFRITGI  400
            ++MA +F+E      Y     ++  KD   +++  K++  +I++A IQS LG+ FRITG+
Sbjct  362  RSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRITGL  419

Query  401  SNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWGLVASILFMVLY  460
            +   E+ +L+LLLRAG+L AP+ + EERTIGP++G +NIT+G++A LWG++   LF++  
Sbjct  420  NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI  479

Query  461  YKKVGLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEE  520
            Y+  GLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE
Sbjct  480  YRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREE  538

Query  521  LRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIGTGSIKGFAITTAIGIATSMF  580
            + NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMF
Sbjct  539  IANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMF  598

Query  581  TSIVGTRAIINLMYGGKRIKKLSI  604
            T+I+ TRA++NL+YGG+ +KKL I
Sbjct  599  TAIMVTRAMVNLIYGGRDFKKLWI  622

137) secD in NC_008700


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  435 bits (1637),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 302/629 (49%), Positives = 446/629 (71%), Gaps = 24/629 (3%)

Query  1    MLNKYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQVVATRGA-DVTATTQSDVSAALTA  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+Q+ ++  A +VT +     + ALT 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIGIKRSELENGQL--LVRVANAEDQLTAKETIAELLGDKYTVALNLAPATPEWLESVG  117
             GI +K S L +     L+R+++ EDQL AK+ +   LGD Y VALNLA +TP+WL +VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLREERIRYAGVHRTVRGIEI  177
            ++PMKLGLDL GGVHFL+EVDM  AI        ++ ++ LR E++RY ++ +    I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  KFRDAETLSQAERFLKSRGNDMVFSDISSGDNVVLLAVMSEAYLKQIKEEALLQNITTIR  237
             F D     QA  +++    D  ++     +  VL   ++ A L +I+E ++ QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADVAAAAN  297
            NRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++     D  ++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  298  GRVPAGSELYQRREGG--PVVLKKEVMLTGDHITGAQPSFDEYSRPQVAIQLDAKGGEIF  355
                  +E+++ REGG  +  + + +++TGD++T+A++SFDE +RPQV I+LD+ GGE+ 
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  SNVTKDNIGKPMATLFIE------YKDSGERNPDGSVKMRKIEE---VISVATIQARLGR  406
            S  T+ N+G++MA +FIE      Y        +  V ++ + E   +IS+ATIQ+ LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  NFVITGLT-HSESQNlalllragaliaPVSIVEERTIGPSLGAENIENGLQAMIWGMVVV  465
            +F ITGL  ++ES +LALLLRAG+L AP+ + EERTIGPSLGA+NI +G++A +WGM+ V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  466  LAFMLVYYRAFGVIANLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLI  525
              F++  YR FG+IA +AL  N++M++++MS++ GA LTLPGIAG+VLT+GMAVD+NVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  526  YERIREELRAGRSVQQAIHEGYGNALSTIADANITTFLTALILFAVGTGAVKGFAVTLMI  585
            + RIREE+  G +VQ+AI EG++ A ++I DAN+TT+L + ILFA+GTG+VKGFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  586  GIATSMFTAIVGTRAIVNALWGGKRVKKL  614
            GI TSMFTAI+ TRA+VN + GG+  KKL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

138) secD in NC_018679


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  435 bits (1637),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 296/629 (48%), Positives = 460/629 (74%), Gaps = 26/629 (4%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTDATVEQVKAALSE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENEQI--LVRVSDSDTQLVTRETLEKALGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + KALGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVIAKSLEDAEGGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   EG  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDALDKAEFFLRNQSRDLTFN--QVDDLT-LRAIFAESKLQEIRDNAVKQNITIIR  234
             F D+   ++A  ++R+   D+ +   +++++  LR  ++ +KL EIR+ ++KQN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQKNDIRDALN  294
            NRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  295  GRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISLDSEGGNKM  352
                  ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+LD++GG+ M
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  353  SRSTRGNIGKPMATVFIEYKST--------GERNKDGKL-VFEKHEQVISVATIRAQLGS  403
            SR+TR+N+G++MA +FIE ++T           +KD  +  F  + ++IS+ATI++ LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  404  KFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQAIMYGLAAV  463
            +F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A + G+  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLI  523
             +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  FERIREEIRDGRSPQQAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMI  583
            F RIREEI +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+KGF++T+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIATSMFTAILVTRVIVNAAWGGRRVEKL  612
            GI TSMFTAI+VTR +VN   GGR   KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

139) secD in NC_012913


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  434 bits (1635),  Expect = 6e-123, Method: Compositional matrix adjust.
 Identities = 286/632 (46%), Positives = 448/632 (71%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFLVAIGILYALPNLYGEDPAVQISGTRGQ-EANSGVLSEVQTVLKD  59
            MLN+YPLWK ++++ ++ +G++Y+ PNLY +D+A+QISG+    +   + +      L D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLATKSIVLENGSI--LVRFNNTDVQLLAKDKITEKLGTNYSVALNLAPATPAWLSSIG  117
              ++ K+  L + +   L+R+++ + QL AKD +   LG +Y VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRREKYQYTAIKSAENFGTT  177
            + PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LR+EK +Y   +S  ++G  
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLARPEQLS--DVQRYLRRQHQNLEVKAI---SDNTLSLGLSDVALNEARESAIEQNLS  232
            I L+  ++    + +  +R+   ++E+ +    +   L ++L+   L E RE +I QNL+
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNGNVNLEA  292
             +R+RV ELGVAE+++QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL  G      
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP----D  293

Query  293  AARGMVTSDSEVKYDRNNRPIVLYKRA-VLGGEHITNASSGVDQNTSRPQVSVTLDSEGG  351
             ++G   +     +    RP     R+ ++ G+++T+A ++ D++ +RPQV++ LD++GG
Sbjct  294  DSKG---TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGG  349

Query  352  EIMSQTTRANIQKPMATLYVE------YKD---SGKKDENGKTILQKHEEVINVATIQGR  402
            E+MS++TR+N+ ++MA +++E      Y     +G   +     ++ +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQGLQASFWGL  462
            +GSQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIGPSLGA+N+ +G++AS+WG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  MIVVAFMVIYYRKFGLIANVALIANIVLLVGLMSLLPGATLTMPGIAGIVLAVGMSVDAN  522
            ++V  F++  YR FGLIA VAL  N+V+L++LMSLL GATLT+PGIAGIVL++GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRPVQQAINEGYSGAFSSIFDANLTTILTAVALYAVGTGPIKGFAIT  582
            VLIF RI+EEI NG  VQ+AI+EG+  A+++I+DANLTT+L +  L+A+GTGP+KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGIAISMFTAITGTRAIVNFLYGGKRIDKL  614
            +SLGI  SMFTAI  TRA+VN++YGG+ + KL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

140) secD in NC_021066


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  433 bits (1630),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 306/636 (49%), Positives = 455/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYIMLvvviivGLMYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDVQLRAREVLVDVLGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++V+   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSELREKGIPYSTVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSIAFRDSAARDQAISWLSPRHRDLVIST---QGATGLKAVMTDERLKEAREYAVQQNI  231
             + ++F D A R+QA + +     D+ I+    +G   L+  +T  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDsa  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  DS 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  292  aaasGRVPGDSEVKDTREG-RPVVLYKR-VILTGDHITDSTSSMDEFNQPQVNISLDSAG  349
                    G +E+ + REG RP     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  297  --------GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILVKEEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

141) secD in NC_009831


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  433 bits (1632),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 295/629 (47%), Positives = 456/629 (73%), Gaps = 24/629 (3%)

Query  1    MLNKYPMWKNLMVIIIIAVGSFYAIPNLFGEDYAVQVVASRGA-EVTATTQSTVNDVLAS  59
            MLNKYP+WK ++++ ++ VG +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNITVKRSELENGQL--LVRVANGDQQLLAKEAIAESLGDKYIVALNLAPATPDWLESLG  117
              I VK S L +     L+R+++ ++QL AK+ +  +LGD Y+VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKLGLDLRGGVHFLMEVDMGEAVRKMTEAKISDFRTDLRGEKIRYAGIRNSAKGIEI  177
            ++PMKLGLDL GGVHFL+EVDM+ A+        ++ ++ LR EK+RY ++ + ++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  KFRDAENLAKAERFLKTRGNDMVFTDISSGDSYFLMANLSEAYLKQIKEEALQQNITTIR  237
             F D  +  +A  +++    D  +T     +   L   L+ A L +I+E +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKadaaaaaS  297
            NRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++           +
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG--------P  292

Query  298  GRVSPSSQVYNRRQGGQ--VVLHKAVMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIF  355
            +    ++++++ R+GG+    +++++++TGD++ +A++SFDE +RPQV+INLD+ GG + 
Sbjct  293  DDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  SNVTKDNIGKPMATLFIE------YKDNGDKNPDGSVKMQKIEE---VISVATIQARLGR  406
            S  T+ N+G++MA +FIE      Y  +  +  +  V +Q + E   +IS+ATIQ+ LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  NFVITGLE-HSEaqnlalllragaliaPVTIVEERTIGPSLGAENIQNGVQAMIWGMAVV  465
            +F ITGL+ ++E+ +LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  466  LIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLI  525
             +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  526  YERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMI  585
            + RIREE+ NG +VQ+AI EG++ A+++I DAN+TT++ + ILFA+GTG+VKGFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  586  GIATSMFTAIVGTRSIVNAMWGGKRVKKL  614
            GI TSMFTAI+ TR++VN + GG+  KKL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

142) secD in NC_018690


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1628),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 292/634 (47%), Positives = 463/634 (74%), Gaps = 31/634 (4%)

Query  1    MLNRFPLWKNLMviiviligglYALPNLYGEDPSVQISGTRGQ-EATSETLAQVQGTLSS  59
            MLN++PLWK ++++ V+++G +Y+ PNLY +D+++QISG+    + T   + +   +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   MNITPKSAVLENGSI--LVRLENDEQQLPAKEKISDVLGDKFSVALNLAPATPSWLTDIG  117
              I  K++ L + +   L+RL ++E+QLPAK+ +   LGD + VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKRGLDLRGGVRFLMEVDMNTALTKQQESLQDSLRSELRKEKLQYKAVKKGENFATV  177
            ++PMK GLDL GGV+FL+EVDM+ A+  +    ++ +++ LRKEK++Y+++    +++ V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL---PQLGNV  177

Query  178  IE--FADADTAEKAARFVRRQHTSLE---ASFIDTTTVSFAPSAEGLSASRDTAIEQNLS  232
            I+  F+D    E+A  +VR+  T +E   A + +   +  A ++  L+  R+ +I QNL+
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPES  292
             +R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    A+P+ 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGPDD  294

Query  293  AARGIVPADSELKFSRDGG--AVVLRRKPSLGGEHIIDATSGKDERGLPQVSINLDAEGG  350
            + +G   +   + F R+GG  A  + R   + G+++ DA ++ DE+G PQV+INLD++GG
Sbjct  295  S-KG---TTEMFEF-REGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  351  HMMAEITKSAVGKPMATLYSEFKDSG---RKDAKG---KVILEKHEE---VINVATINSR  401
            ++M+  T+S VG++MA ++ E + +    R+  +G    V ++   E   +I++ATI+S 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  LGSQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGL  461
            LGSQF+ITG+N+ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN++KG++A++ G+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  ILTIAFCLIYYKVFGLFAAAALTVNMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDANV  521
            ++   F +  Y+ FGL+A+ AL+ NMV+ ++LMSL+GATLT+PGIAGIVL++GM+VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  522  LIYERIKEELRNGRSVQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAITL  581
            LI+ RI+EE+ NG +VQ+AI EG++ A+T+I+D+NLTT+L + +L+A+GTGPVKGFA+T+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  582  ALGVMISMFTAITGTRMLVNWVYGGNKRVKKLWI  615
            +LG+  SMFTAI  TR +VN +YGG +  KKLWI
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKLWI  622

143) secD in NC_004088


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1626),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 460/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREVREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E+REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGAT  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

144) secD in NC_008253


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

145) secD in NC_017631


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

146) secD in NC_008563


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

147) secD in NC_004431


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

148) secD in NC_017652


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

149) secD in NC_017651


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

150) secD in NC_017628


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

151) secD in NC_011993


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

152) secD in NC_011742


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

153) ECSF_0368 in NC_013654


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

154) secD in NC_007946


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

155) secD in NC_013716


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 303/636 (48%), Positives = 459/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYIMlivviivgllYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQNTLQQ  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  ++L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALVGVLGDKYVVALNLAPATPRWLAAIK  117
              I  K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSINFRDASARDEAIAYLSKRHQDLVISS---QGSNALRAVMTDARLSEAREYAVQQNI  231
             + + F D + R++A A + K   D+ I++   +G   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQMREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLAVSILFMVLFYKKFGLIATSALIANLVLIVGVMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+    LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRSIQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG ++Q+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

156) secD in NC_017626


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

157) secD in NC_011748


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

158) APECO78_05545 in NC_020163


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

159) secD in NC_012971


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

160) secD in NC_012892


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

161) secD in NC_012967


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

162) secD in NC_012759


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

163) secD in NC_009801


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

164) secD in NC_011745


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

165) ETEC_0461 in NC_017633


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

166) secD in NC_009800


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

167) secD in NC_011741


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

168) secD in NC_011750


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

169) secD in NC_010473


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

170) secD in NC_020518


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

171) secD in NC_000913


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

172) secD in NC_007779


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

173) secD in NC_022364


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

174) secD in NC_013353


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

175) secD in NC_018650


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

176) secD in NC_018661


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

177) secD in NC_018658


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

178) secD in NC_013364


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

179) secD in NC_011353


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

180) secD in NC_002655


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

181) secD in NC_002695


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

182) secD in NC_013008


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

183) secD in NC_013361


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

184) secD in NC_013941


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

185) secD in NC_017656


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

186) secD in NC_011415


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

187) secD in NC_010498


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

188) secD in NC_011751


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

189) secD in NC_017906


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

190) secD in NC_010658


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

191) secD in NC_007613


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

192) secD in NC_007606


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

193) secD in NC_017328


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

194) secD in NC_004741


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

195) secD in NC_004337


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

196) secD in NC_008258


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

197) secD in NC_016822


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

198) secD in NC_007384


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 304/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

199) secD in NC_015554


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 292/624 (47%), Positives = 453/624 (73%), Gaps = 26/624 (4%)

Query  1    MLNKNSIWKVLSTLIVIGLCALYALPNIYGEDHAVQISAGRDAV-VTESMIGQVESTLAA  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT++ +++   +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGITPKRIEFEDEQI--LVRISDSDTQLVAREALEDALGDDYFVAMNLAPDTPEWLEGLG  117
             GI  K   + ++    L+R+S  + QL A++ +  ALGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GTPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVTQKEDYVEI  177
            +TPMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q  + +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEETLDKAEFFLRNQNRDLTLNQTD---DLVLRAVFSEAKLQEIRENAVKQNITIIR  234
             F D+   ++A  ++R+   D+ +  ++     VLR  ++ AKL EIRE ++KQN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQKNDVRDAIS  294
            NRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  295  GRVPAGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISLDSEGGNKM  352
                  ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+LD++GG+ M
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  353  SRSTRGNIGKPMATVFIEYKSNGERNKD-----DKLI----FEKHEQVISVATIRAQLGS  403
            SR+TR+N+G++MA +FIE ++     ++     +K +    F  + ++IS+ATI++ LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  404  KFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGTQAIVYGLLAV  463
            +F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G +A + G+L V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LVFMLIYYKAFGIVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLI  523
             +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  FERIREEIRDGRSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMI  583
            F RIREEI +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+KGF++T+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIATSMFTAILLTRVIVNAVWGGR  607
            GI TSMFTAI++TR +VN + GGR
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGR  615

200) secD in NC_017047


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1622),  Expect = 6e-122, Method: Compositional matrix adjust.
 Identities = 304/631 (49%), Positives = 464/631 (74%), Gaps = 29/631 (4%)

Query  1    MLNRYPAWKYlmlivvvivgllYALPNLYGEDPAVQITGARGS-DASEATLDQVRNVLDQ  59
            MLN+YP WKY++++ V++VG++Y+ PNLY +D+A+QI+GA  + + ++A +D+  + L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   SKIQIKSVALENGAI--LARFNDTDVQLRAREALTEALGDKFVIALNLAPATPRWLSMLG  117
            + I +K+ +L + +   L R++  + QL A++ +  ALGD +V+ALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQTMDNMRSDLRDKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A+        +++++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDAATRDSAVSYLSPRHRDLVITNS---GDNAIRVVMTDARLSEAREYAVQQNITIL  234
            + F D A R+ A + +     D+ IT +   G   +R+ +T A+L+E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASAAS  294
            RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAG  291

Query  295  TGRVPGDSEVKNMRDG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAGGNA  352
             +   G +E+ + R+G RP     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG+ 
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILAKQEEVINVATIQSRL  402
            MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS L
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPL  410

Query  403  GNSFRITGVNDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLV  462
            G+ FRITG+N+  E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  463  ASILFMVVWYRKFGIIATTALVANLILIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANV  522
               LF++  YR FG+IAT AL  N+++++++MSLL GATLT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  523  LINERIKEELKNGRSVQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITT  582
            LI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  583  AIGVATSMFTSIVGTRAIVNLVYGGKRIKKL  613
            ++G+ TSMFT+I+ TRA+VNL+YGG+ +KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

201) secD in NC_017265


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1621),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGAT  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

202) secD in NC_008149


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1621),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGAT  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

203) secD in NC_006155


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1621),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGAT  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

204) secD in NC_009092


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  431 bits (1621),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 292/629 (47%), Positives = 449/629 (72%), Gaps = 24/629 (3%)

Query  1    MLNKYPMWKNLMVALIIAVGAFYAIPNLFGEDHAVQVVATRGA-EVNASTQSEVTDILSA  59
            MLNKYP+WK +++  ++ VG +Y+ PNL+ +D A+Q+ ++  A +V  +     +  L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRSELENGQL--LVRVADADQQLLAKEAIAEVLGDKYIVALNLAPATPQWLESMG  117
             GI+VK S L +     L+R++  ++QL AK+ +   LGD Y+VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKLGLDLRGGVHFLMEVDMSEAIRKMTEAKIADFRTDLRGEKIRYAGIRNTPKGIEI  177
            ++PMKLGLDL GGVHFL+EVDM  AI        ++ ++ LR EK+RY ++ +  + I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  KFRDAENLAKAERFLKSRTNEMVFVDASSGSDFMLLANMSEIYLKQVKEEALQQNITTLR  237
             F D  +  +A  +++    +  +  A   +  +L   ++   L +++E +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKadaaaiaa  297
            NRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++     D+     
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-----  295

Query  298  GRVSPGSQIYDRREGGK--VALQKEVMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIF  355
                  +++++ REGG+   A+++ +++TGD++ +A++SFDE +RPQV+INLD+ GG + 
Sbjct  296  ---KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  SNVTKDNIGKPMATLFIE------YKDNGAKNPDGSVKMDKIEE---VISVATIQARLGR  406
            S  T+ N+G++MA +FIE      Y  +  +  +  V ++ + E   +IS+ATIQ+ LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  NFVINGLD-HSEaqslalllragaliaPVSIVEERTIGPSLGAENIDNGLQAMIWGMAVV  465
            +F I GL+ ++E+  LALLLRAG+L AP+ + EERTIGPSLGA+NI +G++A +WGM  V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  466  LIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLI  525
             +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  526  YERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMI  585
            + RIREE+  G +VQ+AI EG++ A+++I DAN+TT++ + ILFA+GTG+VKGFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  586  GIATSMFTAIVGTRSIVNAIWGGKRVKKL  614
            GI TSMFTAI+ TR++VN I GG+  KKL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

205) secD in NC_011601


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1619),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 303/636 (48%), Positives = 458/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDAKARDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNI  231
             + + F D   R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTRES-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + RE+ +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

206) Ping_2212 in NC_008709


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1619),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 301/633 (48%), Positives = 456/633 (73%), Gaps = 24/633 (3%)

Query  1    MLNKYPMWKYllllfivfisllYAAPNLYGEDPAVQISATRGA-KVELSTLGDVQDILKQ  59
            MLNKYP+WKY+L+L ++ ++++Y+APNLY +D+A+QIS++  A +V  + ++     L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   SNIIPKSAVLENDQL--LIRLKSSEDQLLARETIIEKLEGDFVTALNLAPSTPAWLEAIG  117
            + I  K++ L ++    L+RL   EDQL A++ +   L +D+V ALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AGPLKLGLDLRGGVYFLMEVDMDEAVSKAQEQMVQDLRGDLRTEKIRFRGITKANSATGV  177
            A P+KLGLDL GGV FL+EVDMD A+         ++++ LR EK+R+R++ +  +   +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV--I  178

Query  178  LVTFTEQSILDSAIDYLKPNNPGYQFSESVDNGRYILSIEMTEQKLQASKEYALQQNLTI  237
             + F +++  + A   ++    +++++ +  NG  +L + +T  KL   +EY+++QNLT 
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  238  LRNRVNELGVAEPLVQRQGTDRIVVQLPGIQDTARAKEILGATATLEFHAVDSETNINDA  297
            +RNRVNELGVAEPLVQRQG++RIVV+LPG+QDTA AK ILG TA LEF+   +  + +++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  298  LAGRLPSSSIVYKERDGRPVV-VKKQIILTGNHIVDAQSGSDDMGRPQVSISLDSQGGSM  356
                  +  + ++E +GRP   V + +I+TG+++ DA+++ D+ GRPQV+I+LD++GG +
Sbjct  299  ------TEMFEFRE-GGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  357  MSRFTKNNIGKPMATLFIEYLPTGKKKPNGKAIIEK-------REE--VANVATIQAQLG  407
            MSR T++N+G++MA +FIE  PT     +    +EK       +E+  + ++ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  408  RSFRITGldnaaeahnlalllragaliaPIQIVQERTIGPSLGQENIDNGIKAMVYGMLA  467
              FRITGL+  +E+ +LALLLRAG+L AP+ + +ERTIGPSLG +NI +G+ A + GML 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  468  VVLFMFVYYRKFGVIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGMAVDANVL  527
            V LF+   YR FG+IA  AL FN+VM++++MS++ GATLTLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  528  IFERIREELAAGKSIQQAIHEGYSNAFSTIADANITTFITALILFAVGTGPIKGFAVTLA  587
            IF RIREE+A G ++Q+AI EG+  A+++I DAN+TT++ + ILFA+GTGP+KGFAVT++
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  588  IGIATSMFTSIFGTRAIVNAVWGGRNDIKKLSI  620
            +GI TSMFT+I  TRA+VN + GGR D+KKL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGR-DFKKLWI  622

207) secD in NC_017168


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGST  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

208) secD in NC_010159


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGST  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

209) secD in NC_008150


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGST  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

210) secD in NC_005810


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGST  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

211) secD in NC_003143


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGST  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

212) secD in NC_009381


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGST  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

213) secD in NC_009708


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 459/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEK  59
            MLN+YPLWKY++++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLG  117
              I+ K+ +L + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VRFRDDKARNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITIL  234
            + F DD  R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGST  352
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGL  461
            LG+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  AVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
                LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

214) secD in NC_010506


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 294/633 (47%), Positives = 457/633 (73%), Gaps = 32/633 (5%)

Query  1    MLNKYPMWKNLMVMIIIAVGSFYAIPNLFGEDYAVQVVATRGA-EVTATTQSTVNDILAS  59
            MLNKYP+WK ++++ ++ VG +Y+ PNL+ +D A+Q+ ++  A +VT +        L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNIEVKRSELENGQL--LVRVNNGEQQLLAKEAIIESLGDKYIVALNLAPKTPQWLESMG  117
              I VK S L +     L+R+++ E+QL AK+ +  +LGD Y+VALNLA  TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKMSDFRTD----LRGEKIRYAGIRNSAK  173
            ++PMKLGLDL GGVHFL+EVDM+ AI    +A++  +  +    LR EK+RY ++ + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAI----DARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  174  GIEIKFRDEENLGRAERFLKTRGNDMVFRDISSGGNYLLLANLSEAYVKQVKEEALQQNI  233
             I++ F D+ +  +A  +++    D  +      G  +L   L+ A + +++E +++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  234  TTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKadaa  293
            TT+RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG-----  291

Query  294  aaaSGRISPSSQVYNRRNGGQ--VVLHKAVMLTGDHIQGAQPSFDEYSRPQVSINLDSKG  351
               ++    ++++++ R+GG+    +++++++TGD++ +A++SFDE +RPQV+INLD+ G
Sbjct  292  ---PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  352  GSIFSNVTKDNIGKPMATLFIE------YKDNGEKNPDGSIKMQKIEE---VISVATIQA  402
            G + S  T+ N+G++MA +FIE      Y  +  +  +  + +Q + E   +IS+ATIQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  RLGRNFVITGLE-HAEaqslalllragaliaPVTIVEERTIGPSLGAENIQNGMQAMIWG  461
             LG +F ITGL+ ++E+  LALLLRAG+L AP+ + EERTIGPSLGA+NI +G++A +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  462  MAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDG  521
            M  V +F++  YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  522  NVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAV  581
            NVLI+ RIREE+ NG +VQ+AI EG++ A+++I DAN+TT++ + ILFA+GTG+VKGFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  582  TLMIGIATSMFTSIVGTRSIVNAIWGGKRVKKL  614
            T+ +GI TSMFT+I+ TR++VN I GG+  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

215) secD in NC_022223


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 9e-122, Method: Compositional matrix adjust.
 Identities = 312/631 (50%), Positives = 459/631 (73%), Gaps = 22/631 (3%)

Query  1    MLNRYPLWKYLLVVFAITLSALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTKALDK  59
            MLN+YPLWKY+L++  + ++ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  +KAL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   ESLSHKSIALENGSI--LVRFNDTDTQISARDVVSEALGKDTIVALNLAPSTPSWLESIG  117
             +++ K+ +L + +   L+R++  + Q++A+DVV  ALG D +VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLIGQQEEAFRSELRDEKIRYRAIRSVGNDRVE  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  +GN  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQ  179

Query  178  VTLRDDEQLEQAQQALTSKHPDMTFTTSKADGRFALIAQFTEQRLQEVRNYAVEQNITIL  237
            + + DD + EQA+  +     D  +T +  +G   L   +T  +L E+R+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR       L+A++
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGP  292

Query  298  sgrapaGSEIKSDRNGRPVV-LKKRVILGGQSITDASSSMDEYGRPQVNISLDSEGGNKM  356
             +   +   +     GRP   + + +I+ G+ +TDA +S DE GRPQVNI+LD++GG+ M
Sbjct  293  DDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  357  SAFSKKNIGKLMATVFAEYKDSG---RRTPDG--KVI----LDKHEEVINQATIQSALGR  407
            S  ++ N+G+ MA +F E + +    R+  +G  K +    +  +  +I+ ATIQS+LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  408  NFRITGIDSAAEaqnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAV  467
            +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  468  MLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLI  527
             LF +  YR FGLIA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FERIREELRDGRNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSI  587
            F RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIIGTRCIVNLLYGGKRIKKLSI  618
            GI+TSMFTAI+ TR +VNL+YGG+ +KKL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

216) secD in NC_009053


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 9e-122, Method: Compositional matrix adjust.
 Identities = 290/636 (46%), Positives = 462/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRFPLWKNLMiiiivligglYALPNLYGEDPSVQISGTRGQ-QATSETLVQVQGTLSS  59
            MLN++PLWK ++I+ ++++G +Y+ PNLY +D+++QISG+    Q T   + +   +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   MNITPKSAVLENGSI--LVRLEKDEQQLPAKEKISEVLGDKFSVALNLAPATPAWLTDIG  117
              I  K++ L + +   L+RL K+E+QLPAK+ +   LGD + VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKLQYKAVKKGENFATV  177
            + PMK GLDL GGV+FL+EVDM+ A+  +    ++ +++ LRKEK++Y+++    +++ V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL---PQLGNV  177

Query  178  IE--FADEETANKAIRYIRRVHTALEAASISPTEISFSP------SESGLATSRDTAIEQ  229
            I+  F+D+   ++A   +R+  T +E   I+P+E++  P      + + LA  R+ +I Q
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFE---ITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  230  NLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEAS  289
            NL+ +R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    A+
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAG  291

Query  290  PESAARGIVPADSEIQYTRDGNPVV-LRRKPSLGGEHIIDATSGKDERGLPQVSINLDAE  348
            P+ + +G   +   +++  +G P   + R   + G+++ DA ++ DE+G PQV+INLD++
Sbjct  292  PDDS-KG---TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  349  GGTMMADITKSAVGKPMATLYSEFKDSG---RKDANG---KVILEKHEE---VINVATIN  399
            GG +M+  T+S VG++MA ++ E + +    R+  NG    V ++   E   +I++ATI+
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  400  SRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMY  459
            S LGSQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN++KG++A++ 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDA  519
            G+++   F +  Y+ FG++A+ AL+ NMV+ ++LMSL+GATLT+PGIAGIVL++GM+VDA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  520  NVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAI  579
            NVLI+ RI+EE+ NG ++Q+AI EG++ A+T+I+D+NLTT+L + +L+A+GTGPVKGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  580  TLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLWI  615
            T++LG+  SMFTAI  TR +VN +YGG +  KKLWI
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKLWI  622

217) APP7_1125 in NC_010939


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  430 bits (1620),  Expect = 9e-122, Method: Compositional matrix adjust.
 Identities = 290/636 (46%), Positives = 462/636 (73%), Gaps = 35/636 (5%)

Query  1    MLNRFPLWKNLMiiiivligglYALPNLYGEDPSVQISGTRGQ-QATSETLVQVQGTLSS  59
            MLN++PLWK ++I+ ++++G +Y+ PNLY +D+++QISG+    Q T   + +   +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   MNITPKSAVLENGSI--LVRLEKDEQQLPAKEKISEVLGDKFSVALNLAPATPTWLTDIG  117
              I  K++ L + +   L+RL K+E+QLPAK+ +   LGD + VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKLQYKAVKKGENFATV  177
            + PMK GLDL GGV+FL+EVDM+ A+  +    ++ +++ LRKEK++Y+++    +++ V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL---PQLGNV  177

Query  178  IE--FADEETANKAIRYIRRVHTALEAASISPTEISFSP------SESGLATSRDTAIEQ  229
            I+  F+D+   ++A   +R+  T +E   I+P+E++  P      + + LA  R+ +I Q
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFE---ITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  230  NLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEAS  289
            NL+ +R+RV+ELGV+EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    A+
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAG  291

Query  290  PESAARGIVPADSEIQYTRDGNPVV-LRRKPSLGGEHIIDATSGKDERGLPQVSINLDAE  348
            P+ + +G   +   +++  +G P   + R   + G+++ DA ++ DE+G PQV+INLD++
Sbjct  292  PDDS-KG---TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  349  GGTMMADITKSAVGKPMATLYSEFKDSG---RKDANG---KVILEKHEE---VINVATIN  399
            GG +M+  T+S VG++MA ++ E + +    R+  NG    V ++   E   +I++ATI+
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  400  SRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMY  459
            S LGSQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN++KG++A++ 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDA  519
            G+++   F +  Y+ FG++A+ AL+ NMV+ ++LMSL+GATLT+PGIAGIVL++GM+VDA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  520  NVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAI  579
            NVLI+ RI+EE+ NG ++Q+AI EG++ A+T+I+D+NLTT+L + +L+A+GTGPVKGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  580  TLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLWI  615
            T++LG+  SMFTAI  TR +VN +YGG +  KKLWI
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGG-RDFKKLWI  622

218) A3UG_04955 in NC_018079


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  429 bits (1616),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 307/635 (49%), Positives = 459/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYIMlvvvilvgllYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALMGVLGDKYVVALNLAPATPRWLAALN  117
              I  K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIAYTTVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GMSITFRDSAARDQAVDYLTQRHRDLVITA---QGSNQLRAVMTDARLKEAREYAVQQNI  231
             + + F D A R+QA   + +   D+ IT+   +G   LR  +T A+L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRIPGDSEVKETREG--QPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ E REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----EEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSIIFMIFFYKKFGLIATSALIANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDA  520
            ++   +F++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

219) PCNPT3_05195 in NC_020802


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  429 bits (1617),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 310/633 (49%), Positives = 459/633 (73%), Gaps = 24/633 (3%)

Query  1    MLNKFPMWKYILLCFVIVVSFLYAAPNLYGEDPAVQVSATRGA-KVENQTFERVNSLLQE  59
            MLNK+P+WKY+L+  V+VV+F+Y+APNLY +D+A+Q+S++  A +V +   +R    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNITAKSSKL-ENGQI-LIRLSSSTDQLMARDIIKNELKHGFITALNLAPATPAWLSAIG  117
              I  K+S L ENG+  L+RLS   DQL A+D++++ L ++++ ALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ATPLKLGLDLRGGVHFLMEVDMDEAVNKSQVQMVQDLRSELREQKIRFRGIREAKNTSAV  177
            ATP+KLGLDL GGVHFL+EVDMD A++        ++++ LR +K+R+R++ +    + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL--GNVI  178

Query  178  IIRFVNEEMLDQAIQHLKPINPGYAFTDEQVKNEFVLKIEMTDEKLRAIKEDALQQNLGI  237
             + F ++   +QA   ++    ++ +T  +++   VL++ +T  KL  I+E +++QNL  
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  238  LRNRVNELGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFHAVDSTTDINDA  297
            +RNRVNELGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEF+   +  D +++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  298  LSGRLPASSIIHKTRSGRPVV-IKKKIILTGNHIVDAQSSNDEYGRPQVSISLDSQGGSK  356
                   + +++   +GRP   + + +I+TG+++ DA++S DE GRPQV+I+LD++GG  
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  357  MSRFTKHNIGKPMATLFIEYLPTG---KKKANG---KVIIEK-REE--IANVATIQAQLG  407
            MSR T+ N+G++MA +FIE  PT    ++  NG    V ++  +E+  I ++ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  408  RSFRITGldnaaeahnlalllragaliaPIQIVEERTIGPSLGEQNIGNGIKAMAYGLFA  467
              FRITGL+  +E+ +LALLLRAG+L AP+ + EERTIGPSLG +NI +G+ A   G++ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  468  VCLFMLIYYRKFGAVANCVLIFNIVMIIGLMSMLPGATLTLPGIAGIVLTVGMAVDANVl  527
            V LF++  YR FG +A   L FN+VM+++LMS+L GATLTLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  528  iferireelleGKSVQRAIHEGYANAFSTIADANITTFITAVILFAVGTGSIKGFAVTLM  587
            IF RIREE+ +G +VQRAI EG+  A+++I DAN+TT++ + ILFA+GTG++KGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  588  IGIATSMFTSIFGTRAIVNALWGGRNDIKKLSI  620
            +GI TSMFT+I  TRA+VN + GGR D+KKL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGR-DFKKLWI  622

220) secD in NC_016041


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  429 bits (1616),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 449/635 (71%), Gaps = 37/635 (5%)

Query  1    MLNKTPFWKYILVIFVVGITALYAMPNIYGEDHAIQISASNNA-TVSEELKTSIERSLKD  59
            MLNK P+WKY+L++ V+ +  +Y+ PN+Y +D AIQIS+++ A  V++       ++L D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIEIKGIELENERI--LVRLLDSDTQLVARELIDSTLDNDDFVVAMNLAPDTPDWLEAF  117
             GI +K+  L ++    L+RL   + QL A++++  +L  DD+VVA+NLA  TP+WL   
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-GDDYVVALNLARTTPNWLRNV  119

Query  118  GANPMKLGLDLRGGVHFLMEVDMNSATT---KAYEDVVGDFKLQLREERIFYRTVVQNAD  174
            GA PMKLGLDL GGVHFL+EVDM+ A     K YE   G+ K  LR E++ YR++ Q ++
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYE---GEVKALLRKEKVRYRSLPQLGN  176

Query  175  SVDVIFRDADMLEKAQFYLRNQFGNLSITERDDLT----LRATFLEARLAEIRDAAVKQN  230
             +++ F D    E+A+  +R+ F ++ IT   +L     LR ++  A+LAEIR+ ++KQN
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEIT-PAELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  231  VTIIRSRINQLGVAEPLVQKQGQERIVVQLPGIQDTAKAKEILNATATLEFRMLDEKNDV  290
            +T +R+R+N+LGVAEPLVQ+QG +RIVV+LPG+QDTA AK IL  TA LEFR+    +D 
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  291  RDAMRGRAPAGSEVI-YHKNGQPYL-LKKQIMLTGSHIIDANSGVDQYGVPNVSIDLDSK  348
            +++        +E++ ++  G+P   + + +++TG ++ DA+++ D+ G P+V+I+LD+ 
Sbjct  296  KGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  349  GGAKWSKATKENIKKPMATVFIEYKTTG----------ERDVNGKLVFEKKEEIISVATI  398
            GG   S+AT+ N+ ++MA +FIE + T           E+DV  +  F     IIS+ATI
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQ-TFKEDKKIISLATI  406

Query  399  QGQLGSSFQITGLDSPTEARELSLLLRAGALIAPIQIVEERTVGPSLGKENIELGMTAII  458
            Q+ LGS F+ITGL++  E+ EL+LLLRAG+L AP+ + EERT+GPSLG +NI  G+ A +
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  459  WGLAAVLVFMLIYYRAFGVIANIALVLNLVMIIGIMSMIPGATLTLPGMAGIVLTVGMAV  518
            WG+  V +F++  YR FG+IA +AL +N+VM++++MS++ GATLTLPG+AGIVLT+GMAV
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAV  525

Query  519  DANVLIFERIREELRDGRSPQQSIHFGYDSAFSTILDANITTFIAGLILFAVGTGPIKGF  578
            DANVLIF RIREE+ +G + Q++I  G+D A+++ILDAN+TT++ G ILFA+GTGP+KGF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  579  SITLMIGIATSMFTAIIVTRVLVNSIWGGRRVTKL  613
            ++T+ +GI TSMFTAI+VTR +VN I GGR   KL
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

221) VAA_00524 in NC_015633


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  428 bits (1613),  Expect = 3e-121, Method: Compositional matrix adjust.
 Identities = 311/631 (50%), Positives = 458/631 (73%), Gaps = 22/631 (3%)

Query  1    MLNRYPLWKYLLVVFAITLSALYALPNIYGEDPAIQITEARGA-SVDMSTLDAVTKALDK  59
            MLN+YPLWKY+L++  + ++ +Y+ PN+Y +D+AIQI+ A  A  V  + +D  +KAL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   ESLSHKSIALENGSI--LVRFNDTDTQISARDVVSEALGKDTIVALNLAPSTPSWLESIG  117
             +++ K+ +L + +   L+R++  + Q++A+DVV  ALG D +VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLIGQQEEAFRSELRDEKIRYRAIRSVGNDRVE  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  +GN  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQ  179

Query  178  VTLRDDEQLEQAQQALTSKHPDMTFTTSKADGRFALIAQFTEQRLQEVRNYAVEQNITIL  237
            + + DD + EQA+  +     D  +T +  +G   L   +T  +L E+R+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR       L+A++
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGP  292

Query  298  sgrapaGSEIKSDRNGRPVV-LKKRVILGGQSITDASSSMDEYGRPQVNISLDSEGGNKM  356
             +   +   +     GRP   + + +I+ G+ +TDA +S DE GRPQVNI+LD++GG+ M
Sbjct  293  DDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  357  SAFSKKNIGKLMATVFAEYKDSG---RRTPDG--KVI----LDKHEEVINQATIQSALGR  407
            S  ++ N+G+ MA +F E + +    R+  +G  K +    +  +  +I+ ATIQS+LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  408  NFRITGIDSAAEaqnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAV  467
            +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  468  MLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLI  527
             LF +  YR FGLIA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FERIREELRDGRNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSI  587
            F RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIIGTRCIVNLLYGGKRIKKLSI  618
            GI+TSMFTAI+ TR +VNL+YGG+ +KKL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

222) secD in NC_018405


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  428 bits (1612),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 307/636 (49%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYIMlvvvilvgllYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALMGVLGDKYVVALNLAPATPRWLAALN  117
              I  K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLRDKGIPYTTVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GMSITFRDSAARDQAVDYLTQRHRDLVITS---QGSNQLRAVMTDARLKEAREYAVQQNI  231
             + + F D A R+QA   + +   D+ IT+   +G   LR  +T A+L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDQS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRIPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKEEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIQQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLAVSILFMIFFYKKFGLIATSALIANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAVD  519
            G+    LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

223) secD in NC_017910


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  428 bits (1611),  Expect = 5e-121, Method: Compositional matrix adjust.
 Identities = 298/633 (48%), Positives = 459/633 (73%), Gaps = 33/633 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGAR-GVAASEKTLIQVQNTLKQ  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  ++L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNISTKSVALENGAI--LARFDSTDTQLRAREALMGVMGDQYVVALNLAPATPMWLRMIN  117
              I+ K+ +L + +   L R+   + QL A++ +   +GD+YVVALNLA +TP WLR + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALS---KLQEQNMDSLRSDLREKGITWTNVRKADNY  174
            A PMKLGLDL GGVHFL+EVDMD A+    K+ E ++ +L   LR   +   ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLDITFRDGQSRDNAISWLQPRHRDLVISS---QGATGLRAVMSDDRLRESREYAVQQNI  231
             +++ F D+  R++A + ++    D+ I++   +G   LR  ++  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQT  291
              +RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKPTRDG-RPVVLYKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAG  349
            +A+++   G +E+   R+G RP     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSGK-----KDSTGRAVLVK----DEEVINVANIQS  400
            G++MS  T+ N+G++MA +F+E + +        ++  + V V+    D  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LLISIAFMILFYKKFGLIATTALIANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDA  520
            +L+   F++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGVGAIKGFAI  580
            NVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+G G++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIVGTRAIVNLLYGGKRINKL  613
            T ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

224) secD in NC_016613


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  427 bits (1609),  Expect = 6e-121, Method: Compositional matrix adjust.
 Identities = 304/631 (49%), Positives = 452/631 (72%), Gaps = 22/631 (3%)

Query  1    MLNRYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTTALDK  59
            MLN+YPLWKY++++  ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EQLSHKSIALENGSI--LVRFTDTDTQISARDVISEALDKDKIVALNLAPSTPDWLEAIG  117
              ++ K+ +L + +   L+R++  + Q++A+DV+  AL+ D +VALNLA +TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKIRYRAIRPSGNESVE  177
            A+P+KLGLDL GGVHFL+EVDMD A++  +   E   ++ LR  K+RYR++   GN  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VLLRNEEQLAEAKSTLEKNHPDMNFVDSDSNGRFALVATFTEQRLQEIRNYAVEQNITIL  237
            + + ++ +  +A++ + K   D ++  ++ NG   L  ++T  +L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAA  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR       L+A++
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGP  292

Query  298  NGRAPAGSEIKQDRDGRPVV-LKKRVILGGSSITDASSSVDEYGRPQVNISLDSEGGNKM  356
            ++   +   +    +GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ M
Sbjct  293  DDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  357  SAFSKKNIGKLMATVFAE------YKDSGRKTPEGKV---ILTKHEEVINQATIQSALGR  407
            S  ++ N+G+ MA +F E      Y     +  E  V    +  +  +I+ ATIQS+LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  408  NFRITGIDSAAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAV  467
            +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  468  MLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLI  527
             LF +  YR FGLIA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FERIREEIRDGRNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLSI  587
            F RIREEI +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S+
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIIGTRCIVNLLYGGKRVDKLSI  618
            GI+TSMFTAI+ TR +VNL+YGG+   KL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

225) secD in NC_011740


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  427 bits (1609),  Expect = 6e-121, Method: Compositional matrix adjust.
 Identities = 303/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYVMlivvivigllYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDSTDTQLRAREALLDILGDKYVVALNLAPATPRWLAAIH  117
              I  K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKDKNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  ALTITFRDSKARDEAISYLSPRHQDLVISS---QGDNALRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A + +     D+ I++   +G   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA  459
            S LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLLVSILFMILFYKKFGLIATSALVANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G+L   LF++ +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

226) Tola_2028 in NC_012691


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  426 bits (1605),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 296/629 (48%), Positives = 453/629 (73%), Gaps = 23/629 (3%)

Query  1    MLNRYPLWKYLMVAFVVIIGTLYSAPNLYGEDPALQVSAIRGH-DVKVDTLDTVKKSLDT  59
            MLN+YPLWKY+++  V+++G +YSAPNLY +D+A+Q+S+     +V    +D   K+L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AKISIKSAVLENNQI--LVRFNNTDDQLQARELVTQALGDKFITALNLAPATPEWLTSIG  117
            A I++K++ L +N    L+R+++ +DQL A+++V +ALGD ++ ALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ASPLKLGLDLRGGVHFLMEVDMDEAINKAQEQLVQDFRTSLREDGIryagvrraagdvvv  177
            A+P+KLGLDL GGVHFL+EVDMD AI+        + ++ LR + +RY ++ + +  + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  afrdSDTQQKGLAHLRKRHIDLTLTDYEDKGQFWVKASMSEAKQKSVTEDALEQNITIIR  237
            +F D   ++++ A +RK   D+ +T  E +G   ++ +++ AK   + E ++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGTARIVVELPGIQDTARAKEILGATATLEFRLVDENADAAAAMN  297
            NRVNELGVAEPLVQRQG+ RIVVELPG+QDTA AK ILG TA LEFRL     D+ ++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  298  GQVPPNSELF-YDRNGRP-VVLQKRIILTGDHITGSSSSADEYGRPQVSIKLDGVGGNRM  355
                  +E+F +   GRP   +++ +I+TGD++T++ +S DE GRPQV+I+LDG GG+ M
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  STATKDSIGKAMASVFIEYKPVGE------PGADGKRRIEKHEE---VINVATIQSRLGS  406
            S AT+ ++G++MA +FIE +P          G +    ++   E   +I++ATIQS LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  DFRITGIDTTQEAHNLSLLLRSGALTAPIQIVEERTIGPSMGQANIDSGLSALGMGTLIL  466
            +FRITG++   E+ +L+LLLR+G+L+AP+ + EERTIGPS+G  NI  G+ A   G L++
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  467  VIFMAIYYKLFGVVANIALMFNVVLMIGVMSMIPGATMTLPGIAGIVLTLGMAVDANVLI  526
             +F+   Y++FG++A +AL FN+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  527  YERIREELRAGRGVQQAIHLGYERAFATIADSNITTFITALILFAVGTGPVRGFALVLMI  586
            + RIREE+  G  VQ+AI  G++RA+++I D+N+TT++ + ILFA+GTGPV+GFA+ + +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  587  GILCSMFTAITGSRAIVNLIWGGRKVKDL  615
            GI+ SMFTAI  +RA+VNLI GGR  K L
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

227) Ser39006_1681 in NC_022268


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  426 bits (1605),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 290/622 (47%), Positives = 450/622 (73%), Gaps = 29/622 (4%)

Query  1    MLIVILAVGLLYALPNLYGEDPAVQITGAR-GVAASESTLVQVQKVLKEQNIASKSIALE  59
            +++ +L VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +  K L +  I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSNPDIQLRAREALLSALGDKFVVALNLAPATPQWLRMLGAEPMKLGLDLR  117
            + +   L R+S+ + QL A++ +  ALGD +VVALNLA +TP+WLR +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMGTALSKLQEQTMDSLRSDLRDKGIPYSSVSKSDNYGVEIRFRDSQTRDE  177
            GGVHFL+EVDM+ A+        + +++ LR   + Y S+++ +N  +++ F D   R++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVNYLTPRHRDLVINAS---GGDMLHAVMSDARLREAREYAVQQNINILRNRVNQLGVAE  234
            A   +     D+ I ++   G  +L+  ++ A+L E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDaaaaaSGHIPGDSEV-  293
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL  +        +++  G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG--------PDDSKGTTEMF  302

Query  294  KYMQDGSPVVLYKR-VILTGDHITDSTSSTDEYNRPQVNISLDSTGGNIMSNFTKNSIGK  352
             + ++G P     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG++MS  T++++G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  LMATLFVE------YK----DSGKKDAKGRAILVKHEEVINVATIQSRLGNSFRITGISN  402
             MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG++ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLVASILFMVVYYR  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   LF++  YR
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGIIATTALLANLVLIIGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR  522
             FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ 
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAITTTIGVLTSMFTS  582
            NG TVQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G++TSMFT+
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLLYGGKRINKLSI  604
            I+ TRA+VNL+YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

228) secD in NC_011149


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  426 bits (1602),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 304/635 (48%), Positives = 458/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QGGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   +G   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----QEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA  520
            ++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

229) secD in NC_021844


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  426 bits (1602),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 304/635 (48%), Positives = 458/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QGGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   +G   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----QEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA  520
            ++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

230) secD in NC_011080


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  426 bits (1602),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 304/635 (48%), Positives = 458/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QGGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   +G   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----QEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA  520
            ++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

231) secD in NC_010102


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  426 bits (1602),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 304/635 (48%), Positives = 458/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QGGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   +G   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----QEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA  520
            ++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

232) secD in NC_009436


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  425 bits (1601),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 305/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQNTLQQ  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  ++L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALVSVLGDKYVVALNLAPATPRWLASIN  117
              I  K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL ++ 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNMDGLRSDLREKGIPYTTVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GMSITFRDAAARDQAVDYLSTRHRDLVISR---QGSNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D A R+QA   +     D+ I+    +G   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQS  291
              +RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKETREG-QPVVLYKR-VILTGDHITDSTSNQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ E REG +P     R +I+TGD++TD+ ++ DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILVKEEEVINVANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLAVSILFMLFFYKKFGLIATTALIANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAVD  519
            G+    LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

233) UMN179_00450 in NC_015460


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  425 bits (1601),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 285/622 (46%), Positives = 451/622 (73%), Gaps = 30/622 (4%)

Query  1    MVIFVVVIGILYALPNLYGEDPAVQVSGTRGQLATEQT-LSDVRQVLEQNKLPIKSIALE  59
            +++ V+V+G++Y+ PNLY +D+A+Q+SG+   L   Q+ +    + L +  +P+K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LAKFTSTDEQLLAKDKILEKLGDNYSVALNLAPATPTWLTDIGAGPMKLGLDLR  117
            + +   L +++  ++QL AKD +   LGD+Y VALNLA +TP WL ++GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDLKSVLAKQQEQLQDSLRTELRKEKFVYKAIQSGENYSTVITLA-DNISPS  176
            GGV+FL+EVD+   +  +    ++ +++ LRKEK  Y+++    + + VI L+ ++ +  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLP---QLGNVIQLGFGDDAER  188

Query  177  DVVRVLKRKH-ANWDVVSNGQN----VTLTLSENELTRLRKSAVEQNITILRKRVNELGV  231
            +  R L RK  ++ ++ +   N    + ++L+   L+ +R  ++ QN+T +R+RVNELGV
Sbjct  189  EQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGV  248

Query  232  AEPVVQQQGADRIVVELPGVQDTARAKEILGATATLEFRMVNQTANLAAAENGMVPSDS-  290
            AEP+VQ+QGA+RIVVELPGVQDTA AK ILG TA LEFR+       A+++++   ++  
Sbjct  249  AEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG------AGPDDSKGTTEMF  302

Query  291  ELQHDRNGTPVVVYRKTILGGEHITDANSGNDEYGRPQVNISLDSEGGNMMSEATKTAIG  350
            E++++   ++ V  R  I+ G+++TDA+++ DE GRPQVNI+LD++GG++MS AT++ +G
Sbjct  303  EFREGGRPAAAVE-RGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVG  361

Query  351  KPMATVYSE------YKD---SGKKDENGKAILTKHEEVINVATIQSRLGNTFRITGINS  401
            ++MA ++ E      Y     +G   +     +  +  +I++ATIQS LG+ FRITG+N+
Sbjct  362  RSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  402  PAEAQNLSVLLRSGALIAPIQIVEERTIGPSLGAQNIEQGMQASFWGLLIVVLFMALYYR  461
             +E+ +L++LLR+G+L AP+ + EERTIGPSLGA+NI +G++AS+WG+L+V LF+   YR
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  462  KFGLIANLALVANIVILVGLMSLIPGATLSMPGIAGIVLSVGMSVDANVLIFERIKEELR  521
             FGLIA +AL  N+V+L++LMSL+ GATL++PGIAGIVL++GM+VDANVLIF RI+EE+ 
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  522  NGRSVQQAINEGYSGAFSSIFDANLTTILTAVILYAVGSGPVKGFAITLSLGVAISMFTA  581
            NG +VQ+AI+EG+  A+++I+DANLTT+L + IL+A+G+GPVKGFA+T+SLG+  SMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  582  ITGTRAVVNFLYGGKRISKLSI  603
            I  TRA+VN++YGG+ + KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

234) Rahaq2_3460 in NC_016818


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  425 bits (1599),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 295/622 (48%), Positives = 451/622 (73%), Gaps = 29/622 (4%)

Query  1    MLIVVIIVGLLYALPNLYGEDPAVQITGARGS-DASEATLDQVRNVLDQNKIQIKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  + + ++A +D+  + L +  I +K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFKDTDIQLRAREALTEALGDKFVIALNLAPATPRWLSMLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +  ALGD +V+ALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALSKLQEQTMDNMRSDLRDKNIPYATVRKLDNYGVEVRFRDAATRDS  177
            GGVHFL+EVDMD A+        +++++ LR  ++ Y ++ +L+N  +++ F D A R+ 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVSYLSPRHRDLVITNS---GDNAARVMMTDARLSEAREYAVQQNITILRNRVNQLGVAE  234
            A + +     D+ IT +   G    R+ +T A+L+E REY+++QN+T +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASAASTGRVPGDSEVK  294
            PLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+ +   G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMF  302

Query  295  DMRDG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAGGNAMSNFTKDNIGK  352
            + R+G RP     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG+ MS  T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRSILAKQEEVINVATIQSRLGNSFRITGVND  402
            +MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG+N+
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMENIKQGLEACLAGLVVSIIFMLFFYK  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   +F++ +Y+
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGLIATSALIANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELS  522
             FGLIAT AL  N+V+++++MSL+ GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTA  582
            NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRALVNLLYGGKRIKKLSI  604
            I+ TRA+VNL+YGG+ +KKL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

235) Rahaq_3382 in NC_015061


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1598),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 297/622 (48%), Positives = 455/622 (74%), Gaps = 29/622 (4%)

Query  1    MLIVVVIVGLLYALPNLYGEDPAVQITGARGS-DASEATLDQVRNVLDQSKIQIKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  + + ++A +D+  + L ++ I +K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFNDTDVQLRAREALTEALGDKFVIALNLAPATPRWLSMLGAEPMKLGLDLR  117
            + +   L R++  + QL A++ +  ALGD +V+ALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALSKLQEQTMDNMRSDLRDKNIPYATVRKLDNYGVEVRFRDAATRDS  177
            GGVHFL+EVDMD A+        +++++ LR  ++ Y ++ +L+N  +++ F D A R+ 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVSYLSPRHRDLVITNS---GDNAIRVVMTDARLSEAREYAVQQNITILRNRVNQLGVAE  234
            A + +     D+ IT +   G   +R+ +T A+L+E REY+++QN+T +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASAASTGRVPGDSEVK  294
            PLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+ +   G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMF  302

Query  295  NMRDG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAGGNAMSNFTKDNIGK  352
            + R+G RP     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG+ MS  T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRAILAKQEEVINVATIQSRLGNSFRITGVND  402
            +MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG+N+
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLVASILFMVVWYR  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   LF++  YR
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGIIATTALVANLILIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELK  522
             FG+IAT AL  N+++++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ 
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVATSMFTS  582
            NG +VQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TSMFT+
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLVYGGKRIKKLSI  604
            I+ TRA+VNL+YGG+ +KKL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

236) secD in NC_021820


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

237) secD in NC_006905


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

238) secD in NC_021818


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

239) secD in NC_011205


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

240) secD in NC_011294


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

241) secD in NC_011274


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

242) secD in NC_021810


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

243) secD in NC_021812


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

244) secD in NC_011083


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

245) secD in NC_020307


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

246) secD in NC_011147


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

247) secD in NC_021984


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

248) secD in NC_011094


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

249) STY0445 in NC_003198


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

250) secD in NC_016856


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

251) secD in NC_017046


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

252) STMMW_04771 in NC_016854


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

253) secD in NC_016810


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

254) secD in NC_016857


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

255) secD in NC_016863


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

256) secD in NC_021814


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

257) secD in NC_004631


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

258) Metme_3939 in NC_015572


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1596),  Expect = 7e-120, Method: Compositional matrix adjust.
 Identities = 302/631 (48%), Positives = 456/631 (73%), Gaps = 25/631 (3%)

Query  1    MQNHFPLWKNILVLTVLVFALIYSLPNLFGNDPAVQLASSNST-PLQQAQADEVAALLKN  59
            M N +PLWK +L+L+VLV ++IYS PNL+ +D+A+Q+++++++  + QA+ D  A  L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AGYNVKAFDFKD-GKI-LARFNNTDEQMKAADFLRNKMANQATVALNLAPATPGWLNALG  117
            AG  VKA  + + GK  L R+++ ++Q+ A D +R+ ++++  VALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMYLGLDLRGGVHFLLEVDMDTAIKQADERYNNDIRSAFREAKVRYQSVTKEANGIKV  177
            A PM LGLDL GGVHFLLEVDMD AI      Y+ ++++ +R  KVRY+S+ + +N I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  VLPDEENRVAAAAVLNKDFRNLDLAES---GPNEFLLTMPEREILAIKKSALDQNITTLR  234
             + D+ +R  A A++ K F +++++ +   G   + +++    +  I+  ++ QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNELGVAEPIIQQQGSNRIVVQLPGVQDTARAKELLGTTATLEYRLVDVEHDVKSAVE  294
            NRVNELGVAEP++Q+QG+NRIVV+LPGVQDTA AK +LG TA LE+RL    +D K++ E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  295  GHVPVGSRVY-YDKNGAPLL-LKRSVIVTGDQITDASSGLDQDGQAAVFITLDGVGAKKM  352
                    ++ +   G P   + R++I+TGDQ+TDA +++D++G++ V I LDG G+  M
Sbjct  301  --------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  353  GKLTQENIGKPMAVVFIEYKSDT----QIVDG--KKVQHK--EKTEKVISVATIRDSFSK  404
            ++ T+ N+G++MAV+FIE ++ T    Q+V+G  K V  +      K+IS+ATI+ +++ 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  405  RFQTTGLDNPQEartlalllragalaaPVEIVEERTVGPSLGQENIDQGMTSIEVGFLLV  464
            +F+ TGL+   E+  LALLLRAG+LAAP+ + EERT+GPSLG +NI +G+ +   G L+V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  465  VVFMIIYYRAFGLIADFALIFNVVLLIAILSLLQATLTLPGMAGIVLTVGMAVDANVLIN  524
             +F++  YR FGLIA  AL FN+V+L+A++SLL ATLTLPG+AGIVLT+GMAVDANVLI 
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  525  ERIREELRNGNSPQASIYVGYEKAFATILDSNVTTLLVALILFGLGTGPVKGFAVVLSLG  584
             RIREE+ NG + Q +I  G+++A+++ILD+N+TTLLV+ ILF++GTGPVKGFAV +SLG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  585  ILTSMFTAITGTRMLVNWIYGDNRRIEKLSI  615
            I+TSMFTAI  TR +VN IYG  R + KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYG-GRDFKKLWI  622

259) secD in NC_021738


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1595),  Expect = 7e-120, Method: Compositional matrix adjust.
 Identities = 280/622 (46%), Positives = 448/622 (73%), Gaps = 31/622 (4%)

Query  1    MVIFVIAIGALYALPNLYGDDPSVQISGTRGQ-QATPETLSQVQSTLSAMNIQPKSAVLE  59
            +++ V+ +G +Y+ PNLY DD+++QISG+    Q T   + +   +L+   I  K++ L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LVRLESSEQQLPAKEKISEALGNNYSVALNLAPATPQWLSDIGGSPMKRGLDLL  117
            + +   L+RL   E+QLPAK+ +  ALG++Y VALNLA +TP+WL ++G++PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKLQYQAVKKGENFATEVEFADNDTAEK  177
            GGV+FL+EVDM+ A+  +    ++ +++ +RKEK++Y+++ +  N   ++ F+D+   E+
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVRLVRLSHPTLDILVNDN------KVTLTPSAQALSESRTMAIEQNLSILRKRVEELGV  231
            A  LVR +   ++I   +       +++LTP+   L+E R  +I QNL+ +R+RV+ELGV
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAK--LAEIREYSIKQNLTTVRNRVNELGV  248

Query  232  SEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNTEANVASAAKGIVPADSE  291
            +EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    +  +  +KG     +E
Sbjct  249  AEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPDDSKG----TTE  300

Query  292  LQNTRDGE--PVVLRRKPSLGGEHIIDATSGTDERGLPQVSIRLDTEGGEMMGEITKMAI  349
            + + R+G   +  + R   + G+++ DA ++ DE+G PQV+I LD +GGE+M+  T+  +
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  350  QKPMATLYTEFKDSG---RKDANG--KVI----LEKHQEVINVATIQTRLGNQFQITGIN  400
             ++MA ++ E + +    R+  NG  K +    +  ++ +I++ATIQ+ LG+QF+ITG+N
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  401  SPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVKQGMEASILGLGLTILFCLAFY  460
            + +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+ +G++AS+ G+ +  LF +A+Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  461  KVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR  520
            + FG++A++AL  NM++ ++LMSL+GATLT+PGIAGIVL++GM+VDANVLI+ RI+EEI 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  521  NGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTA  580
            NG  +Q+AI EG++ A+++I+D+NLTT+L + +L+++GTGPVKGFAVT++LG++ SMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  581  ITGTRMLVNWVYGGKRVKKLWI  602
            I  TR +VN +YGG+  KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

260) PAU_03488 in NC_012962


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  424 bits (1595),  Expect = 8e-120, Method: Compositional matrix adjust.
 Identities = 296/638 (47%), Positives = 461/638 (73%), Gaps = 39/638 (6%)

Query  1    MLNRYPLWKYlmliaailigllyalPNLYGEDPAVQITGAR-GIAASERTLDQVRNVLEK  59
            MLN+YPLWKY++++A +++G++Y+ PNLY +D+A+QI+GA  ++  ++  +D+  + L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DQITSKSIVLENGAI--LARFNNPDIQLRAREILMSALGDQYVVALNLAPATPTWLSKLG  117
              I  K+  L + +   L R+++ + QL A++++  ALGD+YVVALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMETALG---KLQEQNIDGLRTDLREKGIPYSTIRKADNY  174
            A PMKLGLDL GGVHFL+EVDM+ A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GVEIRFRDEKARSDAESYLTGRHRDLVFSVGVNN-----TLKAVMSDERQREARSYAVQQ  229
             +++ F D+  R +A + +     D  F +   +      L+  ++  +  E R Y+++Q
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  230  NITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSSVD  289
            N+T +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL      
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL------  288

Query  290  ATAAESGRVPGDSEVKNTRDG--SPVVLYKRVILTGDHITDSTSGTDEYGQPEVNISLDS  347
            +++++ ++  G +E+ + R+G  ++  + + +I+TGD++TD+ ++ DE G+P+VNI+LD+
Sbjct  289  GAGPDDSK--GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  348  AGGTAMSNFTKDNVGKPMATLFVE------YK----DSGKKDANGRAVLVKNEEVINIAN  397
             GG  MS  T+ NVG++MA +F+E      Y     ++  KD   ++ +  +  +I++A 
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLAT  405

Query  398  IQTRLGNNFRITGISNATEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLEAC  457
            IQ+ LG++FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A 
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  458  LWGLIASILFMVIYYRKFGLIASSALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVA  517
            LWG++   LF++  YR FGLIA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++A
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMA  524

Query  518  VDANVLINERIKEELRNGRTIQQAIHEGYKGAFSSIVDANLTTLITAVILYAVGTGSIKG  577
            VDANVLI  RI+EE+ NG T+Q+AI EG+  A+++I+DANLTTL+ + IL+A+GTG++KG
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  578  FAITTSIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI  615
            FA+T S+G+ TSMFTAI+ TRA+VNL+YGG+ +KKL I
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

261) secD in NC_011283


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 307/636 (49%), Positives = 456/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYvmlvvvivvgliYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+VVG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALLTVLGDKYVVALNLAPATPRWLAALY  117
              I  K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSIVFRDSAARDQAISYLSPRHRDLVISS---QGDNSLKAVMTDERLKEAREYAVQQNI  231
             + + F D A R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKETREG--QPVVLYKRVILTGDHITDSTSSMDEYNQPQVNISLDSAG  349
            +A+++   G +E+ E REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMILFYKKFGLIATSALIANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSL+ GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++GI TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

262) N559_4050 in NC_022082


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  423 bits (1592),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 305/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYvmlvvvivvgliYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+VVG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALLNVLGDKYVVALNLAPATPRWLAALY  117
              I  K+ +L E +   L R+   + QL A++ + + LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSIVFRDSAARDQAISYLSPRHRDLVISS---QGDNSLKAVMTDERLKEAREYAVQQNI  231
             + + F D A R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG--QPVVLYKRVILTGDHITDSTSSMDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMILFYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+++++++MSL+ GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++GI TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

263) secD in NC_017540


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  423 bits (1592),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 305/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYvmlvvvivvgliYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+VVG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALLNVLGDKYVVALNLAPATPRWLAALY  117
              I  K+ +L E +   L R+   + QL A++ + + LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSIVFRDSAARDQAISYLSPRHRDLVISS---QGDNSLKAVMTDERLKEAREYAVQQNI  231
             + + F D A R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG--QPVVLYKRVILTGDHITDSTSSMDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMILFYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+++++++MSL+ GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++GI TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

264) secD in NC_021232


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  423 bits (1592),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 305/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYvmlvvvivvgliYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+VVG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALLNVLGDKYVVALNLAPATPRWLAALY  117
              I  K+ +L E +   L R+   + QL A++ + + LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSIVFRDSAARDQAISYLSPRHRDLVISS---QGDNSLKAVMTDERLKEAREYAVQQNI  231
             + + F D A R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG--QPVVLYKRVILTGDHITDSTSSMDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMILFYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+++++++MSL+ GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++GI TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

265) Thimo_1062 in NC_019940


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  423 bits (1594),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 297/631 (48%), Positives = 451/631 (72%), Gaps = 27/631 (4%)

Query  1    MNQYPLWKNllilgvvlfgilfALPNVFSQDPSIEVSAARGH-EVTEATPDEVRAVLQNV  59
            +N+YPLWK +LIL+V++ G++++ PN++++D++I++S+A    +VT+A  D     L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   GVPFKAVEPLAEDK--VLVRFPSSGDQLRGQEAIEAHLADRYNSALTLVADLPGWLRAID  117
            G+P KA  +LAE+    L+R++   DQL +++ +   L+D Y  AL L    P WLR ++
Sbjct  62   GIPVKA-SSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AQPMYLGLDLRGGIQVLIDVDMEAALEQGLERYTGDIRSLLRQEKIRYLTVMNDANRVTV  177
            A PM LGLDL GG++ L++VDM+ A++  L  Y G++++LLR+EK+RY ++ + +N + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  KFGDAETLDKGRKLIDREFRELEFETASDGKNFDLYARLAPAEEEQLRDFALQQNITTLR  237
             FGD    +++R L+ + F ++E+  A       L   L+PA   ++R+++++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNALGVAEPIVQRQGERRIVVQLPGAQDPARLKEILGATATLEFRLVDTEGSVQDAVE  297
            NRVN LGVAEP+VQRQG  RIVV+LPG QD A  K ILG TA LEFRL    G+  D   
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPDDSK  296

Query  298  GRVPVSSRLY-YDREGRPVL-LKRSVIVTGDQITNATSGFDQNSGTPAVFVNLDSRGARR  355
            G    ++ ++ +   GRP   + R++I+TGDQ+T+A ++FD++ G P V +NLD++G+  
Sbjct  297  G----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGEL  351

Query  356  MREVTTENVGKPMAVVFIENRTVT----EMVDGEPVKRQVRTE------EVISVANIREP  405
            M   T  NVG++MAV+FIE+R  T    +MV+G  V ++V  +       +IS+A I+ P
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNG--VEKDVPVQTFKEDKKIISLATIQSP  409

Query  406  FGRRFQTSGLDSSEEAHNlalflragalaaPIQIVEERTIGPSLGQENIDQGVKSVVYGL  465
            +G +F+ +GL++  E+ +LAL+LRAG+LAAP+ + EERTIGPSLG +NI +GV + + G+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  466  AAVLIFMGLYYRIFGLVADLVLLTNLVLIVAILSLLQATLTLPGIAGIVLTMGMAVDANV  525
              V +F+   YR+FGL+A + L  N+V+++A++SLL ATLTLPGIAGIVLTMGMAVDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  526  LIFERIREELRNGSSPQASINAGYGKALSTIVDANITTLIAAVILFSFGTGPVKGFAVTL  585
            LIF RIREE+ NG + Q +I+ G+++A ++I+DAN+TTL+ + ILF+ GTGPVKGFAVT+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  586  SVGIFTSMFTAILGSRAVVNLIYGGRRLSKL  616
            S+GIFTSMFTAI+ +RA+VNLIYGGR + KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

266) secD in NC_007712


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  423 bits (1591),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 304/635 (48%), Positives = 455/635 (72%), Gaps = 37/635 (5%)

Query  1    MLNRYPLWKYIMlvlalvvgllyalPNIYGEDPAVQITGARGG-GASESTLVQIRNVLEQ  59
            MLN+YPLWKY++++  LVVG++Y+ PN+Y +D+A+QI+GA  +   +++ + +  + L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QHIASKSIALENGAI--MARFASSDVQLRAREALMTALGDNYVVALNLAPATPAWLAMLG  117
              I+ K+ +L + +   + R++  + QL A++ +  ALGD+YVVALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDTALN---KLQEQTMDTLRGDLRDKGIPYATVRKIENY  174
            A+PMKLGLDL GGVHFL+EVDMD A++   K+ E  + +L   LR   + Y ++ ++ N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GSEIRFRDAETRDQAISWLTPRHRDLVINS---QGDNALRATLADERLRQARKYSVQQNI  231
              ++ F D   R+QA + +     D+ I +   +G   LR +L+  +L + R YS++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  TILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLELRLVNSAVDQT  291
            T +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LE+RL  ++ D  
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  292  AAANGRVPGDSEVKATRDG--QPVVLYKRVILTGDHITDSTSSADEYNRPQVNISLDGTG  349
                    G +E+   R+G   +  + + +I+TGD++TD+ +S DE  RPQVNI+LDG G
Sbjct  297  --------GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GTTMSNFTKDNIGKLMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATI  398
            G  MS  T+ N+G+ MA +F+E      Y     ++  KD   +++  K++  +I++ATI
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATI  406

Query  399  QSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEESTIGPTLGLQNITQGLEACL  458
            QS LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EE TIGP+LG +NIT+G++A L
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  459  WGLVASILFMVVWYRKFGLIATMALIVNLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAV  518
            WG++   LF++  YR FGLIAT+AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AV
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAV  525

Query  519  DANVLINERIKEELRNGRTVQQAIHEGYRGAFSSIVDANVATLITAIILYAVGTGSIKGF  578
            DANVLI  RI+EE+ NG TVQ+AI EG+  A+++I+DAN++TL+ + IL+A+GTG++KGF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  579  AITTAIGVATSMFTAIIGTRAIVNLLYGGKRIDKL  613
            A+T ++G+ TSMFTAI+ TRA+VNL+YGG+ + KL
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

267) secD in NC_012880


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  423 bits (1594),  Expect = 9e-120, Method: Compositional matrix adjust.
 Identities = 296/621 (48%), Positives = 450/621 (73%), Gaps = 27/621 (4%)

Query  1    MLIVTIVVGLLYALPNLYGEDPAVQVTGARGT-AASESTLVQIQSVLKEQNISSKSIVLE  59
            +++  +VVG++Y+ PNLY +D+A+Q++GA  +   +++ + +    L +  I+ K+  L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSTPDIQLRAREALLNALGEKYVVALNLAPSTPHWLRMLGAEPMKLGLDLR  117
            + +   L R+S  + QL A++ + +ALG+ YVVALNLA +TP+WLR +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMETALSKLQEQTMDSLRSDLREKNVQYASIRKSDNYGVEIVFRDGQQRDQ  177
            GGVHFL+EVDM+ A+        + +++ LR  +V+Y S+ + +N  +++ F D+ +R+Q
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  SVDYLTSRHRDLVITSS---GSDTLRAVMSDARLREAREYAVQQNINILRNRVNQLGVAE  234
            +   +     D+ IT++   G   LR  ++ A+L E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDPAALASGRVPGDTEVK  294
            PLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D+         G TE+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEMF  302

Query  295  NMRDGG--PIALYKRVILTGDHITDSTSGNDEYNRPQVNISLDSAGGNMMLNFTKVNIGK  352
            + R+GG  + A+ + +I+TGD++TD+ ++ DE  RPQVNI+LD+ GG++M   T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YKDSGKKGANGRAILE--KQEE-VINVATIQSPLGNSFRITGIDNP  403
            +MA +F+E      Y     +G +    ++  K++  +I++ATIQSPLG+ FRITG++  
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQ  422

Query  404  NEarqlalllragaliaPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKK  463
             E+ +LALLLRAG+L AP+ + EERTIGP+LG +NIT+G++A L G+    LF++ +Y+ 
Sbjct  423  GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF  482

Query  464  FGMIATSALLSNLVLVVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSN  523
            FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++N
Sbjct  483  FGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAN  541

Query  524  GRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAIGTGSIKGFAITTGIGVATSMFTAI  583
            G TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSMFTAI
Sbjct  542  GMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAI  601

Query  584  VGTRAIVNLLYGGKRIKKLSI  604
            + TRA+VNL+YGG+ +KKL I
Sbjct  602  MVTRAMVNLIYGGRDFKKLWI  622

268) secD in NC_010694


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1590),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 297/631 (48%), Positives = 458/631 (73%), Gaps = 29/631 (4%)

Query  1    MLNRYPLWKYIMlivvllvgllyalpnlYGEDPAVQITGARGS-AASEQTLVQIQSALKQ  59
            MLN+YPLWKY++++ VL+VG++Y+ PNLY +D+A+QI+GA  +   ++  + +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIPSKSVALENGAI--LARFANTDVQLRAREAIIKVLGEDYVVALNLAPATPAWLAMLS  117
              IP K+ +L + +   L R+++ + QL A++ + K LG+DYVVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYINVRKTANYGLE  177
            A PMKLGLDL GGVHFL+EVDMD A++       +++++ LR   + Y ++ + +N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IRFRDDKARDAAISYLTTRHRDMVINSS---GSNALTAVMSDERMREAREYAVQQNINIL  234
            + F DD  R+ A + +     D  I ++   G   L   ++  ++ E REY+++QN+  +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDATSAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL      ++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL------GAGPD  293

Query  295  NGRIPGDSEVKDTREG-QPVVLYKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAGGNI  352
            +++  G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++
Sbjct  294  DSK--GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDSVGKAMATLFVE------YK----DSGKKDANGRAILEKHEEVINVANIQSRL  402
            MS  T+ +VG++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS L
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPL  410

Query  403  GNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEACLWGLI  462
            G+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP++GA+NIT+G++A LWG++
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  463  ASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANV  522
               +F++  Y+ FGL+AT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  523  LINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITT  582
            LI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  583  AIGVATSMFTAIIGTRAIVNLMYGGKRINKL  613
            ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

269) secD in NC_003197


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1590),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 302/635 (48%), Positives = 458/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDIDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVD+D A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----QEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA  520
            ++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

270) secD in NC_021151


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1590),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 302/635 (48%), Positives = 458/635 (73%), Gaps = 33/635 (5%)

Query  1    MLNRYPLWKYimlvvviivgllYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKIPAKSVALEEGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIH  117
              IP K+ +L E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ADPMKLGLDLRGGVHFLMEVDIDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNY  174
            A PMKLGLDL GGVHFL+EVD+D A++   K+ E ++ +L   LR   + Y ++ +  N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSITFRDSKARDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNI  231
             + + F D   R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQA  291
              +RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRVPGDSEVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVEYKDSG---KKDANG--RAVLVK----QEEVINIANIQS  400
            G++MS  T+ N+G++MA +F+E + +    ++  NG  + V V+    +  +I++A IQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAG  460
             LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  461  LVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA  520
            ++   LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDA
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDA  527

Query  521  NVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAI  580
            NVLI  RI+EE++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  581  TTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI  615
            T ++G+ TSMFTAI+ TRA+VNL+YGG+   KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

271) secD in NC_021743


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 279/622 (45%), Positives = 447/622 (72%), Gaps = 31/622 (4%)

Query  1    MVIFVIAIGALYALPNLYGDDPSVQISGTRGQ-QATPETLSQVQSTLSAMNIQPKSAVLE  59
            +++ V+ +G +Y+ PNLY DD+++QISG+    Q T   + +   +L+   I  K++ L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LVRLESSEQQLPAKEKISEALGNNYSVALNLAPATPQWLSDIGGSPMKRGLDLL  117
            + +   L+RL   E+QLPAK+ +  ALG++Y VALNLA +TP+WL ++G++PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKLQYQAVKKGENFATEVEFADNDTAEK  177
            GGV+FL+EVDM+ A+  +    ++ +++ +RKEK++Y+++ +  N   ++ F+D+   E+
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVRLVRLSHPTLDILVNDN------KVTLTPSAQALSESRTMAIEQNLSILRKRVEELGV  231
            A  LVR +   ++I   +       +++LTP+   L+E R  +I QNL+ +R+RV+ELGV
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAK--LAEIREYSIKQNLTTVRNRVNELGV  248

Query  232  SEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNTEANVASAAKGIVPADSG  291
            +EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    +  +  +KG     + 
Sbjct  249  AEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPDDSKG----TTE  300

Query  292  LQNTRDGE--PVVLRRKPSLGGEHIIDATSGTDERGLPQVSIRLDTEGGEMMGEITKMAI  349
            + + R+G   +  + R   + G+++ DA ++ DE+G PQV+I LD +GGE+M+  T+  +
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  350  QKPMATLYTEFKDSG---RKDANG--KVI----LEKHQEVINVATIQTRLGNQFQITGIN  400
             ++MA ++ E + +    R+  NG  K +    +  ++ +I++ATIQ+ LG+QF+ITG+N
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  401  SPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVKQGMEASILGLGLTILFCLAFY  460
            + +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+ +G++AS+ G+ +  LF +A+Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  461  KVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR  520
            + FG++A++AL  NM++ ++LMSL+GATLT+PGIAGIVL++GM+VDANVLI+ RI+EEI 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  521  NGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTA  580
            NG  +Q+AI EG++ A+++I+D+NLTT+L + +L+++GTGPVKGFAVT++LG++ SMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  581  ITGTRMLVNWVYGGKRVKKLWI  602
            I  TR +VN +YGG+  KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

272) secD in NC_021739


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 279/622 (45%), Positives = 447/622 (72%), Gaps = 31/622 (4%)

Query  1    MVIFVIAIGALYALPNLYGDDPSVQISGTRGQ-QATPETLSQVQSTLSAMNIQPKSAVLE  59
            +++ V+ +G +Y+ PNLY DD+++QISG+    Q T   + +   +L+   I  K++ L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LVRLESSEQQLPAKEKISEALGNNYSVALNLAPATPQWLSDIGGSPMKRGLDLL  117
            + +   L+RL   E+QLPAK+ +  ALG++Y VALNLA +TP+WL ++G++PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKLQYQAVKKGENFATEVEFADNDTAEK  177
            GGV+FL+EVDM+ A+  +    ++ +++ +RKEK++Y+++ +  N   ++ F+D+   E+
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVRLVRLSHPTLDILVNDN------KVTLTPSAQALSESRTMAIEQNLSILRKRVEELGV  231
            A  LVR +   ++I   +       +++LTP+   L+E R  +I QNL+ +R+RV+ELGV
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAK--LAEIREYSIKQNLTTVRNRVNELGV  248

Query  232  SEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNTEANVASAAKGIVPADSG  291
            +EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    +  +  +KG     + 
Sbjct  249  AEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPDDSKG----TTE  300

Query  292  LQNTRDGE--PVVLRRKPSLGGEHIIDATSGTDERGLPQVSIRLDTEGGEMMGEITKMAI  349
            + + R+G   +  + R   + G+++ DA ++ DE+G PQV+I LD +GGE+M+  T+  +
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  350  QKPMATLYTEFKDSG---RKDANG--KVI----LEKHQEVINVATIQTRLGNQFQITGIN  400
             ++MA ++ E + +    R+  NG  K +    +  ++ +I++ATIQ+ LG+QF+ITG+N
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  401  SPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVKQGMEASILGLGLTILFCLAFY  460
            + +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+ +G++AS+ G+ +  LF +A+Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  461  KVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR  520
            + FG++A++AL  NM++ ++LMSL+GATLT+PGIAGIVL++GM+VDANVLI+ RI+EEI 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  521  NGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTA  580
            NG  +Q+AI EG++ A+++I+D+NLTT+L + +L+++GTGPVKGFAVT++LG++ SMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  581  ITGTRMLVNWVYGGKRVKKLWI  602
            I  TR +VN +YGG+  KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

273) secD in NC_021883


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 279/622 (45%), Positives = 447/622 (72%), Gaps = 31/622 (4%)

Query  1    MVIFVIAIGALYALPNLYGDDPSVQISGTRGQ-QATPETLSQVQSTLSAMNIQPKSAVLE  59
            +++ V+ +G +Y+ PNLY DD+++QISG+    Q T   + +   +L+   I  K++ L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LVRLESSEQQLPAKEKISEALGNNYSVALNLAPATPQWLSDIGGSPMKRGLDLL  117
            + +   L+RL   E+QLPAK+ +  ALG++Y VALNLA +TP+WL ++G++PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKLQYQAVKKGENFATEVEFADNDTAEK  177
            GGV+FL+EVDM+ A+  +    ++ +++ +RKEK++Y+++ +  N   ++ F+D+   E+
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVRLVRLSHPTLDILVNDN------KVTLTPSAQALSESRTMAIEQNLSILRKRVEELGV  231
            A  LVR +   ++I   +       +++LTP+   L+E R  +I QNL+ +R+RV+ELGV
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAK--LAEIREYSIKQNLTTVRNRVNELGV  248

Query  232  SEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNTEANVASAAKGIVPADSG  291
            +EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    +  +  +KG     + 
Sbjct  249  AEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPDDSKG----TTE  300

Query  292  LQNTRDGE--PVVLRRKPSLGGEHIIDATSGTDERGLPQVSIRLDTEGGEMMGEITKMAI  349
            + + R+G   +  + R   + G+++ DA ++ DE+G PQV+I LD +GGE+M+  T+  +
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  350  QKPMATLYTEFKDSG---RKDANG--KVI----LEKHQEVINVATIQTRLGNQFQITGIN  400
             ++MA ++ E + +    R+  NG  K +    +  ++ +I++ATIQ+ LG+QF+ITG+N
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  401  SPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVKQGMEASILGLGLTILFCLAFY  460
            + +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+ +G++AS+ G+ +  LF +A+Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  461  KVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR  520
            + FG++A++AL  NM++ ++LMSL+GATLT+PGIAGIVL++GM+VDANVLI+ RI+EEI 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  521  NGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTA  580
            NG  +Q+AI EG++ A+++I+D+NLTT+L + +L+++GTGPVKGFAVT++LG++ SMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  581  ITGTRMLVNWVYGGKRVKKLWI  602
            I  TR +VN +YGG+  KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

274) secD in NC_012731


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1588),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 305/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYvmlvvvivvgliYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V+VVG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALLNVLGDKYVVALNLAPATPRWLAALY  117
              I  K+ +L E +   L R+   + QL A++ + + LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSIVFRDSAARDQAISYLSPRHRDLVISS---QGDNRLKAVMTDERLKEAREYAVQQNI  231
             + + F D A R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKQTREG--QPVVLYKRVILTGDHITDSTSSMDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMILFYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+++++++MSL+ GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++GI TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

275) secD in NC_013282


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1588),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 293/636 (47%), Positives = 453/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYLMLVAVLIVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQNTLQK  59
            MLN+YPLWKY++++AVL+VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  ++L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKISAKSVALEEGAI--LARFDSTDTQLRAREALMSTMGDQFVVALNLAPATPRWLTAIS  117
              I+ K+ +L E +   L R+   + QL A++ +  ++GD++VVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALS---KLQEQNMDSLRSDLREKGLSWTNVRKADNY  174
            A PMKLGLDL GGVHFL+EVDMD A+    K+ E ++ +L   LR   +   ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GVTIQFRDSDIRDAAASYLTARHRDMVVSS---EGDNSLRAVMSDERLREAREYAVQQNI  231
             + + F D   R+ A + +     D  +++   +G   LR  ++  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDRT  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAAAGRIPGDSEVKMTREG--QPVVLYKRVILTGDHITDSTSGVDQYNMPQVNISLDSSG  349
            +A+++   G +E+   REG   +  + + +I+TGD++TD+ ++ D+   PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIHKPMATLFVE------YK----DSGKKDANGRSILMKQEEVINVATIQ  399
            G++MS  T+ N+ ++MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  ARLGQNFVITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLA  459
            + LG +F ITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLAVSILFMILFYKKFGLIATTALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVD  519
            G+    LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

276) secD in NC_007954


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1589),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 294/630 (47%), Positives = 451/630 (72%), Gaps = 26/630 (4%)

Query  1    MLNKYPMWKNIMVMLVIAVGAFYAIPNLFGEDHAVQVVATRGA-EVTTSTQTSVIELLES  59
            MLNKYP+WK ++++ V+ VG +Y+ PNL+ +D A+Q+ ++  A +VT +        L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KGIAVKRAELTN---GQLLVRVQNGEQQLTAKEAIADSLGNKFTVALNLAPATPEWLEAL  116
             GI+VK + L++   G LL R+ + E+QL AK+ +  +LG+ + VALNLA +TP+WL  +
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GGSPMKLGLDLRGGVHFLMEVDMSEAVRKMEEAKIADFRSQLREEKIRYAGVRKTPKGIE  176
            G++PMKLGLDL GGVHFL+EVDM  A+        ++ ++ LR EK+RY ++ +  + I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  IKFRDADTVAKAEAYLKTRGNDMTFADASEGDNFVLRANMSEVYVKQIKEEALQQNIITI  236
            + F D     +A A ++    D  ++ A   +  VLR  ++   + +I+E +++QN+ T+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  237  RNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMLDDKADPSAAA  296
            RNRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EF++        +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAG  291

Query  297  SGRVPAGSQVYPRREGG--IAVLKKEIMLTGNHITGAQPSFDEYSRPQVSINLDAQGGNI  354
            ++   + ++++  REGG   A + + +++TG+++T+A++SFDE +RPQV+INLD++GG++
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FSNVTKDNIGKPMATLFIE------YKDSGLRNPNGTVKMTKIEE---VISVATIQARLG  405
             S  T+ N+G++MA +FIE      Y    +   +  V +  + E   +IS+ATIQ+ LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFVINGLE-HAESQNlalllragaliaPVTIVEERTIGPSLGAENIQNGMQAMIWGLAI  464
             +F I GL+ ++ES +LALLLRAG+L AP+ + EERTIGPSLGA+NI +G++A +WG+ +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VLIFMMIYYRAFGiianiallaniiMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVL  524
            V +F+M  YR FG+IA +AL  N++M++++MS++ GA LTLPGIAG+VLT+GMAVD+NVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IYERIREEILAGRSVQQAIHEGYANALSTIADANITTFMTALIMFAVGTGAVKGFAVTLM  584
            I+ RIREEI  G +VQ+AI EG+  A ++I DAN+TT++ + I+FA+GTG+VKGFAVT+ 
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  IGIATSMFTAIVGTRSIVNAVWGGKRVKKL  614
            +GI TSMFTAI+ TR++VN + GG+  KKL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

277) swp_1679 in NC_011566


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  422 bits (1587),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 289/623 (47%), Positives = 445/623 (72%), Gaps = 24/623 (3%)

Query  1    MWKNLMVMIIIAIGGFYAIPNLFGEDHAVQVVATRGA-EVTASTQSAVNDVLVSKGIAVK  59
            +WK ++++ ++ +G +Y+ PNL+ +D A+Q+ ++  A +VT +        L   GI+VK
Sbjct  7    LWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVK  66

Query  60   RSELENGQL--LVRVGNGEEQLLAKEAIAEALGDKFTVALNLAPATPEWLEAMGGSPMKL  117
             S L +     L+R+++ E+QL AK+ +  ALGD + VALNLA +TP+WL  +G++PMKL
Sbjct  67   ASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKL  126

Query  118  GLDLRGGVHFLMEVDMGEAVRKMTEAKVADFRTDLRAERIRYAGIRNGARGIEIKFRDAE  177
            GLDL GGVHFL+EVDM+ A+        ++ ++ LR E++RY ++ + +  I++ F D  
Sbjct  127  GLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGDDA  186

Query  178  TLANAERFLKSRSADMVFTDRSTGSDYFLVANPSDVYLKQIKEEALQQNITTLRNRVNEL  237
               +A  +++   +D  +T     +   L    +   L +I+E +++QN+TT+RNRVNEL
Sbjct  187  EREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNEL  246

Query  238  GVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDQNADVQAAASGRVPAG  297
            GVAEP+VQRQGA+RI+VELPGVQDTA AK IL+ TA++EF++     D +++        
Sbjct  247  GVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--------  298

Query  298  SELYQRREGG--PVVLKKAVMLTGDHIQGAQPSYDEYSRPQVSINLDSKGGSIFSNVTKD  355
            +E+++ REGG  +  + +++++TGD++ +A++S+DE +RPQV+INLD+ GG + S  T+ 
Sbjct  299  TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRS  358

Query  356  NIGNPMATLFIE------YKDTGEKNADGSVKMKKIEE---VISVATIQARLGRNFVITG  406
            N+G +MA +FIE      Y     +  +  V ++ + E   +IS+ATIQ+ LG +F ITG
Sbjct  359  NVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITG  418

Query  407  L-GHAESQNlalllragaliaPVYIVEERTIGPSLGAENIENGMQAMIWGMAVVLLFMLV  465
            L G++ES +LALLLRAG+L AP+Y+ EERTIGPSLGA+NI +G++A +WGM  V LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  466  YYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIRE  525
             YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVLI+ RIRE
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  526  ELRNGRSIQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATSM  585
            E+ NG ++Q+AI EG++ A+++I DAN+TT++ + ILFA+GTG+VKGFAVT+ +GI TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  586  FTSIVGTRSIVNAIWGGKRVKKL  608
            FT+I+ TR++VN I GG+  KKL
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKL  620

278) secD in NC_015663


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  421 bits (1586),  Expect = 4e-119, Method: Compositional matrix adjust.
 Identities = 307/636 (49%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKYvmlvvviivgliyalPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQE  59
            MLN+YPLWKYV+++ V++VG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKITAKSVALEEGAI--LARFDTTDTQLRAREALVNLLGDKYVVALNLAPATPRWLAAMY  117
              I  K+ +L E +   L R+   + QL A++ + + LGD YVVALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYSTVRKEDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLSIVFRDSAARDQAISYLSPRHRDLVISS---QGNNALKAVMTDERLKEAREYAVQQNI  231
             + + F D A R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQS  291
              +RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------  288

Query  292  AAASGRVPGDSEVKDTREG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAG  349
            +A+++   G +E+ + REG RP     R +I+TGD++TD+ +S DE  +PQVNI+LD+ G
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPTEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLA  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLVVSILFMIFFYKKFGLIATSALIANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVD  519
            G++   LF++ +Y+ FGLIAT AL  N+V+++++MSL+ GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAVGTGAIKGFA  579
            ANVLI  RI+EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI  615
            +T ++GI TSMFTAI+ TRA+VNL+YGG+  KKL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

279) secD in NC_010278


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  421 bits (1585),  Expect = 4e-119, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 452/625 (73%), Gaps = 35/625 (5%)

Query  1    MIIIIVLIGGLYALPNLYGEDPSVQISGTRGQ-QATSETLVQVQGTLSSMNITPKSAVLE  59
            +I+ ++++G +Y+ PNLY +D+++QISG+    Q T   + +   +L+   I  K++ L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LVRLEKDEQQLPAKEKISEVLGDKFSVALNLAPATPTWLTDIGGNPMKRGLDLR  117
            + +   L+RL K+E+QLPAK+ +   LGD + VALNLA +TP WL ++G+ PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKLQYKAVKKGENFATVIE--FADEETA  175
            GGV+FL+EVDM+ A+  +    ++ +++ LRKEK++Y+++    +++ VI+  F+D+   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL---PQLGNVIQLGFGDDAER  188

Query  176  NKAIRYIRRVHTALEAASISPTEISFSP------SESGLATSRDTAIEQNLSILRKRVEE  229
            ++A   +R+  T +E   I+P+E++  P      + + LA  R+ +I QNL+ +R+RV+E
Sbjct  189  EQARALVRKTFTDFE---ITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNE  245

Query  230  LGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPESAARGIVPA  289
            LGV+EP +QRQGA+RIVVELPGVQDTA AK +LG TA LEFRL    A+P+ + +G   +
Sbjct  246  LGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGPDDS-KG---T  298

Query  290  DSEIQYTRDGNPVV-LRRKPSLGGEHIIDATSGKDERGLPQVSINLDAEGGTMMADITKS  348
               +++  +G P   + R   + G+++ DA ++ DE+G PQV+INLD++GG +M+  T+S
Sbjct  299  TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRS  358

Query  349  AVGKPMATLYSEFKDSG---RKDANG--KVI----LEKHEEVINVATINSRLGSQFQITG  399
             VG++MA ++ E + +    R+  NG  K +    +  +  +I++ATI+S LGSQF+ITG
Sbjct  359  NVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITG  418

Query  400  IDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGLILTIAFCLI  459
            +++ +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN++KG++A++ G+++   F + 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  YYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEE  519
             Y+ FG++A+ AL+ NMV+ ++LMSL+GATLT+PGIAGIVL++GM+VDANVLI+ RI+EE
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE  538

Query  520  LRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAITLALGVMISMF  579
            + NG ++Q+AI EG++ A+T+I+D+NLTT+L + +L+A+GTGPVKGFA+T++LG+  SMF
Sbjct  539  IANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMF  598

Query  580  TAITGTRMLVNWVYGGNKRVKKLWI  604
            TAI  TR +VN +YGG +  KKLWI
Sbjct  599  TAIMVTRAMVNLIYGG-RDFKKLWI  622

280) Dd586_1005 in NC_013592


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  421 bits (1585),  Expect = 5e-119, Method: Compositional matrix adjust.
 Identities = 298/625 (48%), Positives = 452/625 (73%), Gaps = 35/625 (5%)

Query  1    MLIVTIVVGLLYALPNLYGEDPAIQVTGARGT-AASESTLVQIQNVLQEQHIASKSIALE  59
            +++  +VVG++Y+ PNLY +D+AIQ++GA  +   +++ + +  + L +  I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSTPDIQLRAREVLLSALGEKYVVALNLAPATPTWLRMLGAEPMKLGLDLR  117
            + +   L R+S  + QL A++V+  ALG+ YVVALNLA +TP WLR +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQTMDSLRSDLREKGIQYASVRKADNYGVEILFRDGQL  174
            GGVHFL+EVDMD A++   K+ E  + +L   LR   ++Y S+ + +N  +++ F D+  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDNAVNYLTPRHRDLVFNNS---GSDALRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A   +     D+ +  +   G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDPAALASGRVPGDT  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D+         G T
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTT  299

Query  292  EVMNMRDGG--PIALYKRVILTGDHITDSTSGNDEYNRPQVNISLDSAGGNMMSNFTKDN  349
            E+ + R+GG  + A+ + +I+TGD++TD+ ++ DE  RPQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAILEKQEEVINVATIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  IDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A L G+    LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALLLNLVLVVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL +N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRSVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGSIKGFAITTGIGVATSM  579
            E++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRIKKLSI  604
            FTAI+ TRA+VNL+YGG+ +KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

281) secD in NC_020260


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  421 bits (1583),  Expect = 8e-119, Method: Compositional matrix adjust.
 Identities = 293/638 (46%), Positives = 452/638 (71%), Gaps = 39/638 (6%)

Query  1    MLNRYPLWKYLMLVAVLIVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQNTLQK  59
            MLN+YPLWKY++++AVL+VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  ++L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EKISAKSVALEEGAI--LARFDSTDTQLRAREALMSTMGDQFVVALNLAPATPRWLTAIS  117
              I+ K+ +L E +   L R+   + QL A++ +  ++GD++VVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNMDSLRSDLREKGLSWTNVRKADNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++ +L   LR   +   ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GVTIQFRDSDIRDAAVSYLTSRHRDMVISS---QGDNSLRAVMSDERLREAREYAVQQNI  231
             + + F D   R+ A + +     D  I++   +G   LR  ++  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSSVDRS  291
              +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  ++ D  
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  292  AAAAG---RVPGDSEVKMTREGQPVVLYKRVILTGDHITDSTSGVDQYNMPQVNISLDSA  348
            +++     R  G +   + R          +I+TGD++TD+ ++ D+   PQVNI+LD+ 
Sbjct  297  GTTEMFEFREGGRPAAAVERG---------LIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  349  GGNIMSNFTKDNIHKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVAT  397
            GG++MS  T+ N+ ++MA +F+E      Y     ++  KD   +++  K++  +I++AT
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLAT  405

Query  398  IQARLGQNFVITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEAC  457
            IQ+ LG +F ITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A 
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  458  LAGLAVSILFMILFYKKFGLIATTALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA  517
            L G+    LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++A
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMA  524

Query  518  VDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKG  577
            VDANVLI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KG
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  578  FAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI  615
            FA+T ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

282) Entas_0908 in NC_015968


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1580),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 298/625 (48%), Positives = 448/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVILVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMGVLGDKYVVALNLAPATPRWLAALNAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLRDKGIAYTTVRKEDNYGMSITFRDSAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQAVTYLSQRHRDLVITS---QGSNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R+QA + + +   D+ IT+   +G   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDQSAAAAGRIPGDS  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKEEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRSVQQAIEEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

283) secD in NC_010468


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

284) secD in NC_012947


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

285) EcDH1_3201 in NC_017625


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

286) secD in NC_017638


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

287) secD in NC_017660


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

288) EKO11_3441 in NC_016902


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

289) secD in NC_017646


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

290) secD in NC_017663


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

291) secD in NC_017641


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

292) secD in NC_017635


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

293) secD in NC_017664


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

294) secD in NC_011852


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 291/622 (47%), Positives = 451/622 (73%), Gaps = 30/622 (4%)

Query  1    MVILVVAIGILYALPNLYGEDPSVQVSGTRGQ-QASAETLTQVQSALASLNITPKAMNLE  59
            +++ V+ +G++Y+ PNLY +D+++Q+SG+    Q +   + +   AL+   I  KA +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LVRLNKDEEQLPAKEKIAEVLGNNYSVALNLAPATPEWLTSIGGEPMKRGLDLR  117
            + +   L+RL+K+E+QLPAK+ +   LG++Y VALNLA +TP+WL ++G+ PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDMNTALAKQQDQLQDTLRNDFRKEKWQYKAVKKAENFATDVEFNDTDTADK  177
            GGV+FL+EVDM+ A+  +    ++ ++  +RKEK +Y+++ +  N   ++ F D    ++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVRYIRRTNPNLEATYISPT------VVRFAQSAQGLATSRDLAIEQNLSILRKRVEELG  231
            A   +R+T  ++E   I+P+      V+R A ++  LA  R+ +I QNL+ +R+RV+ELG
Sbjct  191  ARALVRKTFTDFE---ITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VSEPTIQRQGADRIVVELPGVQDTARAKEILGATATLEFRLVNGNANLESAARGIVPADS  291
            V+EP +QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL  G  +    ++G   +  
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD----SKG---TTE  300

Query  292  EIKYSRDGMPTV-LYRKTILGGEHIINATSGKDERGLPNVSINLDAQGGDLMSNATKSAV  350
             + +  +G P+  + R  I+ G+++ +A ++ DE+G P+V+INLD++GG+LMS AT+S V
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  351  GKPMATLYSEFKDSG---RRDANG---KVILEKHEE---VINVATINSRLGSSFQITGIN  401
            G++MA ++ E + +    R+  NG    V ++   E   +I++ATI+S LGS F+ITG+N
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  402  SAAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAQGMDASMLGLGLTILFCVVYY  461
            + +E+ +LA+LLR+G+L AP+ + EERTIG+SLGADN+++G+DAS+ G+ +  LF +  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  462  KVFGlfataallanlvlTIGLMSLIGATLTMPGIAGIVLAVGMSIDANVLIYERIKEEIR  521
            + FGL+AT AL  N+V+ ++LMSL+GATLT+PGIAGIVL++GM++DANVLI+ RI+EEI 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  522  NGRSIQQAIHEGYNGAFTSIFDSNLTTILVAIILYAVGTGPVKGFAVTLALGVMISMFTA  581
            NG ++Q+AI EG++ A+T+I+D+NLTT+LV+ IL+A+GTGPVKGFAVT++LG+  SMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  582  ITGTRMLVNLVYGGKRVKKLWI  603
            I  TR +VNL+YGG+  KKLWI
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

295) secD in NC_017644


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1582),  Expect = 8e-119, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 447/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

296) secD in NC_017634


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1582),  Expect = 8e-119, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 447/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

297) secD in NC_022370


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1582),  Expect = 8e-119, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 447/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

298) secD in NC_017632


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1582),  Expect = 8e-119, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 447/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIVIGLLYALPNLFGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+V+G++Y+ PNL+ +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   +GD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLSKRHPDLVISS---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A + K   D+ I++   +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII  459
            +N  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

299) secD in NC_021591


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1582),  Expect = 8e-119, Method: Compositional matrix adjust.
 Identities = 302/632 (48%), Positives = 460/632 (73%), Gaps = 31/632 (4%)

Query  1    MLNRYPLWKYLMlivviivgllYALPNLYGEDPAVQITGAR-GVAASETTLDQVRTVLEK  59
            MLN+YPLWKY++++ V++VG++Y+ PNLY +D+A+QI+GA  ++  +++ +D+    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIASKSIALENGAI--LARFKDPDVQLRAREALMAELGDKFVVALNLAPATPAWLAMLG  117
              I+ K+ +L + +   L R+   + QL A++ +   LGD +VVALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSELREKGIPYASIRKLDNNGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR   + Y S+ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQ  179

Query  178  VRFRDDAARDQAISYITPRQRDLVLSA---NGANTLKASLTDARLSEAREYAVQQNITIL  234
            + F DDA R+QA + +     D+ +++   NG   L+ +LT A+L+E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVntnadataaa  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAG  291

Query  295  nGRVPGDSEVKNTREG--QPVVLYKRVILTGDHITDSTSSTDEYNQPQVNISLDSAGGTS  352
             +   G +E+ + REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ GG  
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSR  401
            MS  T+ N+G++MA +F+E      Y     ++  KD   +++  K++  +I++A IQS 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSP  409

Query  402  LGNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGL  461
            LG+ FRITG+    E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  VASIVFMVVWYRKFGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
            +   +F++  YR FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEELKNGRSIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAIT  581
            VLI  RI+EE+ NG ++Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVATSMFTAIVGTRAIVNLLYGGKRINKL  613
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

300) W5S_3286 in NC_017845


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1582),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 284/622 (46%), Positives = 448/622 (73%), Gaps = 29/622 (4%)

Query  1    MLVVVLFVGLLYALPNLYGEDPAVQVTGARGT-AASETTLIQVQNVLKEQNITSKSIALE  59
            +++ VL VG++Y+ PNLY +D+A+Q++GA  +   +++ + +  + L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSNPDIQLRAREALVNELGEKFVVALNLAPATPTWLRLLGAEPMKLGLDLR  117
            + +   L R+S+ + QL A++ + + LG+ +VVALNLA +TP WLR +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKNIPYAAVRKIDNYGVEIRFRDAQTRDD  177
            GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +++N  +++ F D   R++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  GLSYLTSRHRNLVLSSS---GGNLMRAVMSDERLREAREYAVQQNINILRNRVNQLGVAE  234
            + + +     ++ ++++   G  ++R  ++  +L E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSDADATAAANGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL  +  D+         G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEMF  302

Query  295  NMRDGS-PVVLFKR-VILTGDHITDSTSSNDEYNRPQVNISLDSAGGNTMSNFTKDSIGK  352
            + R+G+ P     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG+ MS  T+ ++G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  LMATLFVE------YK----DSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDN  402
             MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG++ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   LF++ +Y+
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGVIATSALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELS  522
             FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSIQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTA  582
            NG ++Q+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLLYGGKRINKLSI  604
            I+ TRA+VNL+YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

301) secD in NC_013421


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  420 bits (1582),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 284/622 (46%), Positives = 448/622 (73%), Gaps = 29/622 (4%)

Query  1    MLVVVLFVGLLYALPNLYGEDPAVQVTGARGT-AASETTLIQVQNVLKEQNITSKSIALE  59
            +++ VL VG++Y+ PNLY +D+A+Q++GA  +   +++ + +  + L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSNPDIQLRAREALVNELGEKFVVALNLAPATPTWLRLLGAEPMKLGLDLR  117
            + +   L R+S+ + QL A++ + + LG+ +VVALNLA +TP WLR +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKNIPYAAVRKIDNYGVEIRFRDAQTRDD  177
            GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +++N  +++ F D   R++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  GLSYLTSRHRNLVLSSS---GGNLMRAVMSDERLREAREYAVQQNINILRNRVNQLGVAE  234
            + + +     ++ ++++   G  ++R  ++  +L E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSDADATAAANGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL  +  D+         G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEMF  302

Query  295  NMRDGS-PVVLFKR-VILTGDHITDSTSSNDEYNRPQVNISLDSAGGNTMSNFTKDSIGK  352
            + R+G+ P     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG+ MS  T+ ++G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  LMATLFVE------YK----DSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDN  402
             MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG++ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   LF++ +Y+
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGVIATSALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELS  522
             FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSIQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTA  582
            NG ++Q+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLLYGGKRINKLSI  604
            I+ TRA+VNL+YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

302) secD in NC_017731


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1579),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 295/634 (47%), Positives = 447/634 (71%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYlmliaailigllyalPNLYGEDPAVQITGVRGT-AANEQTLIQVQKTLEK  59
            MLN+YPLWKY++++A +++G++Y+ PNLY +D+A+QI+G   +    +  + +  K+L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSIALENGA--VLARFNNPDIQLRAREALVSALGDQYVVALNLAPATPKWLEAVG  117
              I  K+ +L + +   L R+++ + QL A++ +  ALGD+YVVALNLA +TP+WL  VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNMDGIRNDLRQAKVPYSSIRKGDNYSVE  177
            + PMKLGLDL GGVHFL+EVDMD A+        + ++  LR+ KV Y S+ + +N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IRFRNADDRSQAEKILLRKFQDLVFSNGNNNTMTAV---MTDERLREARNYAVSQNITII  234
            + F +  +R QA  ++ + F D+ ++ ++ N +  +   +T  +L E R+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNQSVDPAAAE  294
            RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL   + D+ ++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTT  299

Query  295  NG---RVPGDSEVKYDRNGFPYVLYKRVVLTGDHITDSTSGSDENGAPQVSIGLDSAGGS  351
            +    R  G +    +R          +++TGD++TD+ ++ DE+G PQV+I LD+ GG 
Sbjct  300  EMFEFREGGRPAAAVERG---------LIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  352  VMSDFTRDNQGKQMATLFVE------YK----DSGKKDAEGRVILMKDEKVINAANISAR  401
            +MS  TR N G+ MA +F+E      Y     ++  KD   +  +  D K+I+ A I + 
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSP  409

Query  402  FGSQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGL  461
            +GSQFRITG+ +  E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G+ A L G+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  FASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
            +   LF++  YR FGLIA+ AL  N++M++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAIT  581
            VLI  RI+EE+ NG +VQ++I EG+  A+++I+DANLTTL+ + IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVATSMFTAIIGTRAIVNLLYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

303) secD in NC_009901


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1579),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 291/624 (47%), Positives = 446/624 (72%), Gaps = 26/624 (4%)

Query  1    MWKNLMViiiisiGAFYAIPNLFGEDHAVQVVATRGA-EVSASTMSTVNEVLKSKGIAVK  59
            +WK ++++ ++ +G +Y+ PNL+ +D A+Q+ ++  A +V+ + +      L   GI+VK
Sbjct  7    LWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVK  66

Query  60   RSELEN---GQLLVRVNNGEEQLLAKEAISDALGDKYTVALNLAPATPEWLEAMGGSPMK  116
             S L +   G LL R+++ E+QL AK+ +  ALGD Y VALNLA +TP+WL  +G++PMK
Sbjct  67   ASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMK  125

Query  117  LGLDLRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKIRYAGIRNGAKGIEIKFRDA  176
            LGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++ + ++ I++ F D 
Sbjct  126  LGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGDD  185

Query  177  ETLTKAENFLKSRSNDMVFQDKTVGDDYVLVANPSEAYLKQIKEEALQQNITTLRNRVNE  236
                +A  +++    D  +    + +  VL    + A L +I+E +++QN+TT+RNRVNE
Sbjct  186  AEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNE  245

Query  237  LGVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDEKADVQAAMSGRVPA  296
            LGVAEP+VQRQGA+RI+VELPGVQDTA AK IL+ TA++EF++     D +++       
Sbjct  246  LGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-------  298

Query  297  GSELYQRRTGG--PVVLKKAVMLTGDHIQGAQPSFDEYSRPQVAINLDAKGGSIFSNVTK  354
             +E+++ R GG  +  + +++++TGD++ +A++SFDE +RPQV INLD+ GG + S  T+
Sbjct  299  -TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATR  357

Query  355  DNIGKPMATLFIE------YKDTGEKNADGSVKMKKIEE---VISVATIQARLGRNFVIT  405
             N+G++MA +FIE      Y     +  +  V ++ + E   +IS+ATIQ+ LG +F IT
Sbjct  358  SNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRIT  417

Query  406  GLE-HAEaqnlalllragaliaPVYIVEERTIGPSLGKENIDNGMQAMIWGMAVVLIFML  464
            GL+ ++E+ +LALLLRAG+L AP+Y+ EERTIGPSLG +NI +G++A +WGM  V +F++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  465  VYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIR  524
              YR FGLIA +AL+ N+VM++++MS++ GA LTLPGIAG+VLT+GMAVD+NVLI+ RIR
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  525  EELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATS  584
            EE+ NG +VQ+AI EG++ A+++I DAN+TT++ + ILFA+GTG+VKGFAVT+ +GI TS
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  585  MFTCIVGTRSIVNAIWGGKRVKKL  608
            MFT I+ TR++VN I GG+  KKL
Sbjct  597  MFTAIMVTRAMVNLIYGGRDFKKL  620

304) secD in NC_009655


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1579),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 276/632 (44%), Positives = 447/632 (71%), Gaps = 30/632 (4%)

Query  1    MLNRFPLWKNLMVIFMIAIGALYALPNIYGEDPAVQISGTRGH-EANEDTLSDVQNLLAG  59
            MLN++PLWK ++++ ++ +G +Y+ PN+Y +D+A+QISG+    +  +  +    + L++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NRLTTKSIVLENGTI--LARFNNTNDQLLAKDKIVEKLGTGYSVALNLAPATPAWLSSIG  117
              +  K+  L +     L R+++ +DQL AKD +   LG +Y VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKWGLDLRGGVRFLMEVDMNTALSKRQEQLQDSIKTELRKEKIQYAAVQNGENFSSI  177
            ++PMK GLDL GGV+FL+EVDM+ A+  R    ++ +K+ LRKEK++Y ++ +   ++++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQ---LGNV  177

Query  178  VTLV--NPEQRFPALQLLRKAHPNLTVTDTNDTTIS---LALSDAALIEARDSAIEQNLN  232
            + L   +  +R  A  L+RK+  ++ +T ++   I+   +AL+ A L E R+ +I QNL 
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVGELGVAEAVIQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNTNVTPEA  292
             +R+RV ELGVAE+++QRQGA+RIVVELPG+QDTA AK ILG TA LEFRL      P+ 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGPDD  294

Query  293  MRRNIVPSDTEIQYQPDGTPVALFKKSML-GGEHIINSSAGIDNQTGGTQVSVTLDAEGG  351
             +     +   ++++ +G P A   ++++  G+++ ++ A++D++ G  QV++ LD++GG
Sbjct  295  SK----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGG  349

Query  352  DIMSQITKLNLKKPMATLYVE------YKDSGKKDANGKVVLEKHAE---VISVATIQGR  402
            ++MS+ T+ N+ ++MA +++E      Y     ++ +  V ++   E   +IS+ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGSGTMAEAQNLSVLLRSGALIAPIQIVEERTVGPSLGAQNVEQGLKAGLWGL  462
            +GS+F+ITG    +E+ +L++LLR+G+L AP+ + EERT+GPSLGA+N+ +G+ A+LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  AIVIVFCLIYYKLFGFIACLALCVNMILVVGLMSLLPGATLTMPGIAGIILSVGMSVDAN  522
             +V +F +  Y++FG+IA +AL  NM+++++LMSLL GATLT+PGIAGI+L++GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRPIQQAIDEGYNGAWTSIFDANLTTILTSIVLYAVGTGPVKGFAIT  582
            VLIF RI+EEI NG  +Q+AI EG++ A T+I+DANLTT+L + +L+A+GTGPVKGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRMLVNWIYGGKRVEKL  614
            +SLG+  SMFTAI  TR +VN IYGG+   KL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

305) GU3_06510 in NC_016745


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1579),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 305/631 (49%), Positives = 468/631 (75%), Gaps = 23/631 (3%)

Query  1    MLNRYPLWKYLMVILVITISFLYAAPNLFGEDPALQVSGSRGT-QVSSDILVKAQQSLSQ  59
            MLN+YPLWKY++++ V+ ++F+Y+APNL+ +D+A+Q+SG+  + QV+   + +A ++L++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AGIEVKSAALENDQL--LIRFSNTDDQLRGKDLVAEVLGDDYITALNLAPSTPAWLEAIG  117
            AGI VK+++L ++    L+R+S+ +DQL +KD+V   LGDDY+ ALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AGPLKLGLDLRGGVHFLMEVDMDEALNRVQEQTVQDFRTELRQERLRYSGVLSRDGGTQV  177
            A P+KLGLDL GGVHFL+EVDMD A++        + ++ LR+E++RY ++   +   Q+
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  VFRDADTRDKAISHLRQRYPELVFTTQDNGDSFGLLAVMSEQRLKEVKEYALQQNITIIR  237
             F D   R++A + +R+ + ++ +T  +  +   L   ++  +L E++EY+++QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGADRIVVQLPGIQDTARAKEILGATATLEFRLVDERadaaaaaa  297
            NRVNELGVAEPLVQRQGA+RIVV+LPG+QDTA AK ILG TA LEFRL     D+     
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK----  296

Query  298  GRVPPGSELFTDRNG--RAVVLQQRVILTGEHIVDANSGMDEFSRPQVNISLDAPGGSRM  355
                  +E+F  R+G   A  +++ +I+TG+++ DA+++ DE +RPQVNI+LD+ GG  M
Sbjct  297  ----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  ADFTKDNVGRAMATVFTEYKPATE------PGVDGK---PSLRKEQEVINVATIQSRLGR  406
            +  T+ NVGR+MA +F E +P+T        GV+      +++ ++ +I++ATIQS LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  SFRITGIDSMAEaqnlalllragaliaPIQIVEERTIGPSLGQQNVENGLMAMIYGLLAV  466
             FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPSLG +N+ +G+ A + G+L V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  467  VLFMAIYYRKFglvanlallanlviiigvMSMVPGATMTLPGIAGIVLTIGMSVDANVLI  526
             LF+   YR FGL+A +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GM+VDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  527  FERIREELRDGRSVQQAIHMGYEKafatitdanittfitaiilfaVGTGPIKGFAVTLMI  586
            F RIREE+ +G +VQ+AI  G+++A+++I DAN+TT++ + ILFA+GTGP+KGFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  587  GILASMFTAIVGTRALVNLLWGGKRLKKLSI  617
            GI++SMFTAI+ TRA+VNL+ GG+ +KKL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

306) secD in NC_021848


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1579),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 305/632 (49%), Positives = 455/632 (72%), Gaps = 24/632 (3%)

Query  1    MLNRYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTTALDK  59
            MLN+YPLWKY++++  ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EHLSHKSIALENGSI--LVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLEAIG  117
              ++ K+ +L + +   L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKIRYRAIRPSGKEGVE  177
            A+P+KLGLDL GGVHFL+EVDMD A++  +   E   ++ LR  K+RYR++   G + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  178  VLLRDEEQLAEAKRTLTKNHPDMNFVESDSNGRYALIATFTEQRLQEIRNYAVEQNITIL  237
            + + D+ +  +A+  + K   D ++  ++ NG   L  ++T  +L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAG  291

Query  298  ngrapaGSEIKQDRDG-RPVV-LKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNK  355
             + + + +E+ + R+G RP   + + +I++G  +TDA +S DE GRPQVNI+LD++GG+ 
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  356  MSAFSKKNIGKLMATVFAE------YKDSGRKTPEGKV---ILTKHEEVINQATIQSALG  406
            MS  ++ N+G+ MA +F E      Y     +  E  V    +  +  +I+ ATIQS+LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  407  RNFRITGIDSAAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACVWGMVA  466
             +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  467  VMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVL  526
            V LF +  YR FGLIA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  527  IFERIREELRDGRSPQQAIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLS  586
            IF RIREE+ +G + Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  587  IGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI  618
            +GI+TSMFTAI+ TR +VNL+YGG+   KL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

307) secD in NC_021847


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1579),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 305/632 (49%), Positives = 455/632 (72%), Gaps = 24/632 (3%)

Query  1    MLNRYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTTALDK  59
            MLN+YPLWKY++++  ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EHLSHKSIALENGSI--LVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLEAIG  117
              ++ K+ +L + +   L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKIRYRAIRPSGKEGVE  177
            A+P+KLGLDL GGVHFL+EVDMD A++  +   E   ++ LR  K+RYR++   G + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  178  VLLRDEEQLAEAKRTLTKNHPDMNFVESDSNGRYALIATFTEQRLQEIRNYAVEQNITIL  237
            + + D+ +  +A+  + K   D ++  ++ NG   L  ++T  +L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAG  291

Query  298  ngrapaGSEIKQDRDG-RPVV-LKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNK  355
             + + + +E+ + R+G RP   + + +I++G  +TDA +S DE GRPQVNI+LD++GG+ 
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  356  MSAFSKKNIGKLMATVFAE------YKDSGRKTPEGKV---ILTKHEEVINQATIQSALG  406
            MS  ++ N+G+ MA +F E      Y     +  E  V    +  +  +I+ ATIQS+LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  407  RNFRITGIDSAAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACVWGMVA  466
             +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  467  VMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVL  526
            V LF +  YR FGLIA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  527  IFERIREELRDGRSPQQAIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLS  586
            IF RIREE+ +G + Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  587  IGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI  618
            +GI+TSMFTAI+ TR +VNL+YGG+   KL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

308) A464_368 in NC_021870


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1578),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 296/625 (48%), Positives = 447/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVAVIVVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++AV+VVG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKQDNYGLSITFRDGKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D+  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QGDNALRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   +G   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYKGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

309) secD in NC_004547


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1579),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 297/633 (47%), Positives = 455/633 (72%), Gaps = 29/633 (4%)

Query  1    MLNRYPLWKYlmlvvvlfvgllyalPNLYGEDPAVQVTGARGT-AASETTLIQVQNVLKE  59
            MLN+YPLWKY++++ VL VG++Y+ PNLY +D+A+Q++GA  +   +++ + +  + L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QNITSKSIALENGAI--LARFSNPDIQLRAREALVNELGEKFVVALNLAPATPTWLRVLG  117
              I  K+ +L + +   L R+S+ + QL A++ + + LG+ +VVALNLA +TP WLR +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKNIPYAAVRKVDNYGVE  177
            A PMKLGLDL GGVHFL+EVDMD A++       + +++ LR  ++ Y ++ +++N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IRFRDAQTRDDGLNYLT---SRHRnlvlsssgsnllRAAMSDERLREAREYAVQQNINIL  234
            + F D   R+++   +    +         +G  +LR A++  +L E REY+++QN+  +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSDADATAAA  294
            RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  295  NGRVPGDSEVKNMRDGS-PVVLFKR-VILTGDHITDSTSSNDEYNRPQVNISLDSAGGNT  352
                 G +E+ + R+G+ P     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG+ 
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDSIGKLMATLFVE------YK----DSGKKDATGRSILEKHEEVINVATIQSRL  402
            MS  T+ ++G+ MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS L
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPL  410

Query  403  GNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLI  462
            G+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  463  ASILFMVFFYKKFGVIATSALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANV  522
               LF++ +Y+ FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  523  LINERIKEELSNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITT  582
            LI  RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  583  AIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI  615
            ++GI TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

310) secD in NC_005126


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1578),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 298/638 (47%), Positives = 450/638 (71%), Gaps = 39/638 (6%)

Query  1    MLNRYPLWKYlmliaailigllyalPNLYGEDPAVQITGAR-GIAASEQTLVQIHNVLEK  59
            MLN+YPLWKY++++A +++G++Y+ PNLY +D+A+QI+GA  ++  ++  + +  + L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NQIASKSIALENGAI--LARFDNSDIQLRAREALVSTLGDQYVVALNLAPATPTWLSKVG  117
              I+ K+ +L + +   L R+ + + QL A++ +  +LGD+YVVALNLA +TP WL +VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMETALG---KLQEQNIDGLRTDLREKGIPYSTARKIDNY  174
            A PMKLGLDL GGVHFL+EVDM+ A++   K+ E ++ +L   LR   + Y +  +++N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GVEIRFRDEKARSEAENYLTGRHRDLVFSIGSNN-----TLKAVMSDERQREARSYAVQQ  229
             +++ F D+  R +A   +     D  F I + +      L+  ++  +  E R Y+++Q
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  230  NITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTGID  289
            N+T +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL     D
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  290  STAATSGRVPGDSEVKSTRDGN--PVVLYKRVILTGDHITDSIPDTDEYGNPQVSISLDS  347
            S         G +E+   R+G   +  + + +I+TGD++TD+ +  DE G PQV+I+LD+
Sbjct  295  SK--------GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  348  AGGTAMSNFTKDNVGKPMATLFVE------YK----DSGKKDANGRSVLVKHEEVINIAN  397
             GG  MS  T+ NVG++MA +F+E      Y     ++  KD   ++ +  +  +I++A 
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLAT  405

Query  398  IQTRLGNSFRITGLSNATEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLEAC  457
            IQ+ LG+ FRITGL+   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A 
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  458  LWGLIASILFMVIYYRKFGVIASSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA  517
            LWG++   LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++A
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMA  524

Query  518  VDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVGTGSIKG  577
            VDANVLI  RI+EE+ NG TVQ+AI EG+  A+++I+DANLTTL+ + IL+A+GTG++KG
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  578  FAITTSIGVATSMFTAIVGTRGIVNLLYGGKRIKKLSI  615
            FA+T S+G+ TSMFTAI+ TR++VNL+YGG+ +KKL I
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

311) secD in NC_022000


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1577),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 287/622 (47%), Positives = 444/622 (72%), Gaps = 28/622 (4%)

Query  1    MLIFAILI-GLLYALPNLYGEDPAVQITGARGT-AANEQTLDQVRSLLDKEKIEAKSIAL  58
            +LI+A+L+ G++Y+ PNLY +D+A+QI+GA  +    +  +D+    L    I  K+ +L
Sbjct  11   VLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSL  70

Query  59   ENGAI--LARFSNPDIQLRAREALLPALGDKFVVALNLAPATPKWLEAIGGEPMKLGLDL  116
             + +   L R+S+ + QL A++ +  ALGD +VVALNLA +TP+WL  +G+ PMKLGLDL
Sbjct  71   AENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDL  130

Query  117  RGGVHFLMEVDMETALGKLQEQNVDSLRTLLRDEGIPYSSIRKTDNYGVEIRFRNADDRS  176
             GGVHFL+EVDM+ A++       + +++LLR E + Y S+ + +N  +++ F +  +R 
Sbjct  131  SGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAERE  189

Query  177  KASDYLARRNQDLIFRNGDNNS---LKAIFTDERLRDARTYAVQQNITILRNRVNQLGVA  233
            +A   + +   D+ +  ++ N+   L+  +T  +L + R Y+++QN+T +RNRVN+LGVA
Sbjct  190  QARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVA  249

Query  234  EPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDPSALETGRIPGDSEV  293
            EPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL     D+         G +E+
Sbjct  250  EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEM  301

Query  294  -KYTRDGRPTILYKR-VVLTGDHITDSTSQADEYGQPQVSISLDSAGGSIMSNFTKDNVG  351
              +  +GRP+    R +++TGD++TD+ +  DE G+PQV+I+LD+ GG +MS  T+ NVG
Sbjct  302  FEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVG  361

Query  352  KPMATLFVEYKDSG-----KRDENDRAILVK----NEEVINVANIQTRLGNNFRITGISN  402
            ++MA +F+E + +        +  ++ + V+    +  +I++A IQ+ LG++FRITG++ 
Sbjct  362  RSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  ANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNITQGLEACLWGLIASVAFMIIYYR  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++    F++  YR
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR  522
             FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ 
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTA  582
            NG +VQ+AI EG+  A+++I+DANLTTL+ + IL+A+GTG++KGFA+T ++G+ TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLLYGGKRIKKLSI  604
            I+ TRA+VNL+YGG+ +KKL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

312) ST548_p5582 in NC_020181


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1576),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 297/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLIYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V++VG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALVNLLGDKYVVALNLAPATPRWLAAMYAEPMKLGLDLR  117
            E +   L R+   + QL A++ + + LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYSTVRKEDNYGLSIVFRDSAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQAISYLSPRHRDLVISS---QGNNALKAVMTDERLKEAREYAVQQNINILRNRVNQLG  231
            R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDS  291
            VAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKDTREG-RPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG RP     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPTEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSL+ GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

313) Thicy_0987 in NC_015581


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  419 bits (1576),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 293/633 (47%), Positives = 457/633 (73%), Gaps = 29/633 (4%)

Query  11   NRFPAWKYLLIIAVVVLGITYAMPNLFGDDPSVQVSSTQAG-QFNERTTEEIEQRLIAAG  69
            N++P WKY+LI+AV+V+G+ Y+ PNL+ DD+++Q+S++ ++ Q  +   +   + L  AG
Sbjct  3    NKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAG  62

Query  70   LTPKL--LSFDGNQYLIRFDDVDTQLQANDLMREMFGRQAVVALNLAPATPGLLRAVGGQ  127
            +  K   L+ +G+  L+R+   + QL A+D++R  +G + VVALNLA +TP  LR VG+ 
Sbjct  63   IPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGAT  122

Query  128  PMYLGLDLRGGVHFLmdvdmdaavaGAYRRFDDEVRNLLRDERVRYQTVEYQDETLRVIF  187
            PM LGLDL GGVHFL++VDMD A+ +  + +++EV+ LLR E+VRY+++   ++ +++ F
Sbjct  123  PMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGF  182

Query  188  RSAEARDQGLVIINREMSNELQTRALDEGEQALVEMRLASSVIAETKRFALQQNITTLRN  247
                 R+Q+  ++ +  + +++  + +    +++ M L+++ +AE + ++++QN+TT+RN
Sbjct  183  GDDAEREQARALVRKTFT-DFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  248  RINELGVAEPVIQQQGERRIVVQLPGVQDTARAKEILGATATLEFRLVDERGDAERAERT  307
            R+NELGVAEP++Q+QG  RIVV+LPGVQDTA AK ILG TA LEFRL    +D+      
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK-----  296

Query  308  GAVPPNTQLFNFRDG-RPIL-LQRNVIVTGESVINAQSGIDAQQGSPQVSVTLDGAGGRR  365
                  T++F+FR+G RP   ++R +I+TG+ V +A++++D ++G PQV++ LDG GG  
Sbjct  297  ----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGGEL  351

Query  366  MLATTRDNIGNRMAVVFIESR---------VETVERDGELVRERIVTRDVINAAVIRDQF  416
            M  +TR N+G  MAV+FIE R         V+ VE+D   V+     + +I+ A I+  +
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVP-VQTFKEDKKIISLATIQSPL  410

Query  417  ANRFQITGLSSSQEAQNlalllragalaaPMEIVEERTVGPSLGQDNINQGLMSVIFGFI  476
            +++F+ITGL++  E+ +LALLLRAG+LAAPM + EERT+GPSLG DNI +G+ + + G +
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  477  LV-LIIMAWRYKAFGMIANVALTVNLVVIVAVLSLLQATLTLPGIAGIVLTVGMAVDANV  535
            +V L+IMA  Y+ FG+IA VAL+ N+V+++A++SLL ATLTLPGIAGIVLT+GMAVDANV
Sbjct  471  FVSLFIMA-IYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  536  LIFERIREEMKKG-SIQNAIHSGYEKAFVTIADANITTLIAAIVLFSFGTGPIKGFAITL  594
            LIF RIREE+ +G ++Q AI  G+++A+ +I DAN+TTL+ + +LF+ GTGP+KGFA+T+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  595  SIGIATSMFTAILLTRGLVNWRYGNKRVTKLWI  627
            S+GI TSMFTAI++TR++VN  YG +   KLWI
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

314) secD in NC_008345


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  418 bits (1574),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 301/629 (48%), Positives = 447/629 (72%), Gaps = 24/629 (3%)

Query  1    MLNKYPMWKNIMVMLVIAIGSFYAIPNLFGEDHAVQIVATRGA-EVTASTQTTVVDLLDS  59
            MLNKYP+WK ++++ V+ +G +Y+ PNL+ +D A+QI ++  A +VT +        L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QGIAVKRAELENGQL--LVRVQNPEQQLVAKEAIAELLGQKYTVALNLAPATPEWLEAVG  117
             GI+VK + L +     L+R+ + E+QL AK+ +   LG+ Y VALNLA +TP+WL  VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLREEKIRYAGIRKTPKGIAI  177
            ++PMKLGLDL GGVHFL+EVDM+ AI        ++ ++ LR EK+RY ++ +  + I +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  KFRDAETVDQAETYLKTRSNDMTYTDASSGNEFMLLATMSDAYLKQIKEEALQQNITTIR  237
             F D    +QA + ++    D   T A      +L  +++ A L +I+E +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFRMVDDKADVSAAAN  297
            NRVNELGVAEP+VQRQGA+RI+VELPGVQDTA AK ILG TA++EFR+  +  D  ++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  298  GRVPAGAEVYQRREGG--IAVLKKEVMLTGDHITGAQPTFDEYSRPQVAINLDAKGGSIF  355
                  +E+++ REGG   A + + +++TGD++T+A+++FDE +RPQV INLD+ GG + 
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  356  SNVTKDNIGKPMATLFIEYKDSGT---RNPDGTVKMTRIE------EVISVATIQARLGR  406
            S  T+ N+G++MA +FIE + + T   +  +G  K   ++       +IS+ATIQ+ LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  407  NFVITGLE-HTEaqslalllragaliaPVTIVEERTIGPSLGAENIQNGVQAMIWGmvvv  465
            +F ITGL+ + E+  LALLLRAG+L AP+ + EERTIGPSLGA+NI +GV+A +WGM+ V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  466  lvfmmvYYRAFGFIanlallanlIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLI  525
             +F+M  YR FG+IA +AL  N++M++++MS++ GA LTLPGIAG+VLT+GMAVD+NVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  526  FERIREELLGGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMI  585
            F RIREE+  G +VQ+AI EG++ A+++I DAN+TT++ + ILFA+GTG+VKGFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  586  GIATSMFTAIVGTRSIVNAVWGGKRVKSL  614
            GI TSMFTAI+ TR++VN + GG+  K L
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

315) ENC_23520 in NC_021046


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  418 bits (1573),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 297/625 (48%), Positives = 447/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMGVLGDKYVVALNLAPATPRWLAALNAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLRDKGIPYTTVRKEDNYGLSITFRDSAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQAVTYLSQRHRDLVITS---QGSNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R+QA + + +   D+ IT+   +G   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDQAAAASGRVPGDS  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKEEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLAVSIIFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+    +F++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRSVQQAIEEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

316) secD in NC_010067


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  418 bits (1574),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 447/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALVSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREEGIPYTTVRKEDNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR E + Y ++ + +N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAITYLTPRHRDLVISS---QGGNALRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A + +     D+ I++   +G   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

317) HICON_12340 in NC_014922


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  418 bits (1572),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 281/632 (45%), Positives = 457/632 (73%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVVIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++V+G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSIVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLA--NVSQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  232
            I L+  + ++R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  292
             +R+RV ELGVAE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  293  ISRNMLPADSEVKYDRQGHPVALFKRA-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  351
             + +M+       +   G+P A   R+ ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  352  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  402
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGIDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  462
            +GS+F+ITG+++ +E+ +L+ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  VAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDAN  522
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRSIQQAINEGYNSAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  582
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  614
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

318) secD-1 in NC_012582


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  418 bits (1572),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 310/630 (50%), Positives = 455/630 (73%), Gaps = 21/630 (3%)

Query  1    MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK  59
            MLN+YPLWKY++++  + V+ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPDWLESIG  117
            A ++ K+ +L + +   L+R++  + Q++A+D++  ALG D +VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L++ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR  237
             + D  +  Q++ L+     D  +T +E +G  VL   +T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaaa  297
            NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD  293

Query  298  grapaGSEIKFDRNGRP-VVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS  356
            +   +   + F   GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ MS
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  AFSKKNIGKLMATVFAE------YKDSGKRSPEGKV---ILTKHEEVINQATIQSALGRN  407
              ++ N+G+ MA +F E      Y      + E  V    +  +  +I+ ATIQS+LG +
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  408  FRITGIDSPAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM  467
            FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  468  LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVlif  527
            LF +  YR FG+IA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  528  erireelreGKNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIG  587
             RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  588  ILTSMFTAIVGTRCIVNLLYGGKRINKLSI  617
            I+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

319) secD in NC_009457


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  418 bits (1572),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 310/630 (50%), Positives = 455/630 (73%), Gaps = 21/630 (3%)

Query  1    MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK  59
            MLN+YPLWKY++++  + V+ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPDWLESIG  117
            A ++ K+ +L + +   L+R++  + Q++A+D++  ALG D +VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L++ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR  237
             + D  +  Q++ L+     D  +T +E +G  VL   +T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaaa  297
            NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD  293

Query  298  grapaGSEIKFDRNGRP-VVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS  356
            +   +   + F   GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ MS
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  AFSKKNIGKLMATVFAE------YKDSGKRSPEGKV---ILTKHEEVINQATIQSALGRN  407
              ++ N+G+ MA +F E      Y      + E  V    +  +  +I+ ATIQS+LG +
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  408  FRITGIDSPAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM  467
            FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  468  LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVlif  527
            LF +  YR FG+IA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  528  erireelreGKNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIG  587
             RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  588  ILTSMFTAIVGTRCIVNLLYGGKRINKLSI  617
            I+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

320) secD in NC_021286


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  418 bits (1572),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 301/629 (48%), Positives = 455/629 (73%), Gaps = 26/629 (4%)

Query  1    MLNKYPLWKNllvilvvlvaalyalPNIYGEDPAVQISANRNA-TIDTSTMDRVKSSLEN  59
            MLNKYPLWK +L++ V++V+ +Y+ PN+Y +D+A+QIS+   A  +  + +DR   +L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   VGIQAKSIALEEEQL--LVRLNSDDEQLKARESILESLGDNYIVALNLAPATPEWLKSVG  117
             GI  K+ +L E+    L+RL+ +++QL A++ +  +LGD+Y+VALNLA +TP+WL++VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AQPMKLGLDLRGGVHFLMEIDMDEAVRKIVDGMKDTIRAELREERIRYSAVRVNDTTVEI  177
            A PMKLGLDL GGVHFL+E+DMD A+   +    + ++A LR E++RY ++   +  +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  ELRneeayaeaanyLDGRYQGY--TlleddenqllqlqMSEQKLAETRDYAVSQNITIMR  235
             + ++    +A   +   + ++  T  E +   +L++ ++  KLAE R+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  236  NRVNELGVAEPVIQRQGSNRIVVELPGVQDTARAKEILGATATLEFRMVDSENDVRDAQN  295
            NRVNELGVAEP++QRQG+NRIVVELPGVQDTA AK ILG TA LEFR+  + +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  296  GRVPFGSELMPMRDG--PAQLLKEDVILTGDHIVNAGVGYDEYNRPQVNITLDGAGGNKM  353
                  +E+   R+G  PA  +  ++I+TGD++ +A  ++DE  RPQVNI LDG GG+ M
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  354  SLATKDNVGQPMATVFIEYKAT--------DERDAEGNLQ-FTKNAEVINVATIQSRLGS  404
            S AT+ NVG++MA +FIE ++T        +  + +  +Q F  +  +I++ATIQS LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  405  NFRITGV-GANEaqnlalllragaliaPIQIVEERTVGPSLGQQNIDAGTQAIFWGFVLV  463
            +FRITG+ G  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G +A +WG ++V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LAFMLLYYKKFGlvancalaanlvlIIGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLI  523
              F++  Y+ FGL+A  ALA N+V+++++MS++ GATLTLPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  FERIREEIKAKRSPQQAIHHGYDSALSTIADANVTTLIAALILFAIGNGPIKGFAITLAI  583
            F RIREEI    + Q+AI +G+D A ++I DAN+TTL+ + ILFA+G GP+KGFA+T+++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIITSMFTAIVGTRAIVNSVWGGKKLSKL  612
            GI+TSMFTAI+ TRA+VN + GG+ + KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

321) secD in NC_006512


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  418 bits (1572),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 301/629 (48%), Positives = 455/629 (73%), Gaps = 26/629 (4%)

Query  1    MLNKYPLWKNllvilvvlvaalyalPNIYGEDPAVQISANRNA-TIDTSTMDRVKSSLEN  59
            MLNKYPLWK +L++ V++V+ +Y+ PN+Y +D+A+QIS+   A  +  + +DR   +L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   VGIQAKSIALEEEQL--LVRLNSDDEQLKARESILESLGDNYIVALNLAPATPEWLKSVG  117
             GI  K+ +L E+    L+RL+ +++QL A++ +  +LGD+Y+VALNLA +TP+WL++VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AQPMKLGLDLRGGVHFLMEIDMDEAVRKIVDGMKDTIRAELREERIRYSAVRVNDTTVEI  177
            A PMKLGLDL GGVHFL+E+DMD A+   +    + ++A LR E++RY ++   +  +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  ELRneeayaeaanyLDGRYQGY--TlleddenqllqlqMSEQKLAETRDYAVSQNITIMR  235
             + ++    +A   +   + ++  T  E +   +L++ ++  KLAE R+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  236  NRVNELGVAEPVIQRQGSNRIVVELPGVQDTARAKEILGATATLEFRMVDSENDVRDAQN  295
            NRVNELGVAEP++QRQG+NRIVVELPGVQDTA AK ILG TA LEFR+  + +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--  298

Query  296  GRVPFGSELMPMRDG--PAQLLKEDVILTGDHIVNAGVGYDEYNRPQVNITLDGAGGNKM  353
                  +E+   R+G  PA  +  ++I+TGD++ +A  ++DE  RPQVNI LDG GG+ M
Sbjct  299  ------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  354  SLATKDNVGQPMATVFIEYKAT--------DERDAEGNLQ-FTKNAEVINVATIQSRLGS  404
            S AT+ NVG++MA +FIE ++T        +  + +  +Q F  +  +I++ATIQS LGS
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  405  NFRITGV-GANEaqnlalllragaliaPIQIVEERTVGPSLGQQNIDAGTQAIFWGFVLV  463
            +FRITG+ G  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G +A +WG ++V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LAFMLLYYKKFGlvancalaanlvlIIGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLI  523
              F++  Y+ FGL+A  ALA N+V+++++MS++ GATLTLPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  FERIREEIKAKRSPQQAIHHGYDSALSTIADANVTTLIAALILFAIGNGPIKGFAITLAI  583
            F RIREEI    + Q+AI +G+D A ++I DAN+TTL+ + ILFA+G GP+KGFA+T+++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIITSMFTAIVGTRAIVNSVWGGKKLSKL  612
            GI+TSMFTAI+ TRA+VN + GG+ + KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

322) secD in NC_011312


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1568),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 305/631 (49%), Positives = 456/631 (73%), Gaps = 22/631 (3%)

Query  1    MLNRFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGSRGA-EVQTSTLDVVAENLKN  59
            MLN++PLWKY+++++VL+++ +Y+ PNLY +D+A+QI+G+  A +V  + +D  A  L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNIAYKSIAFENGS--VLVRFKDTDSQISARDIISQSLGKYYVVALNLAALTPDWLTSIG  117
              I+ K+ ++ + +   L+R+   + Q++A+D++ ++LG  YVVALNLA  TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AKPMKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLREAKIRYRAIRSSGKESVE  177
            A PMKLGLDL GGVHFL+EVDMD A+   +   E   ++ LR  K+RYR++   G + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  178  VVLRNAEQLEEAKNVLSDAHRDMTFVDSESNGQFKLIASFTDQRLQEIRNYAVEQNITII  237
            + + +  + E+A+ ++  +  D  +  +E NG   L  ++T  +L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAA  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR       L+A++
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGP  292

Query  298  NGRAPAGSEIKEDRNGRPVV-LKKRIILGGASITDASSSADEYGRPQVNISLDSEGGSKM  356
            ++   +   +     GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG  M
Sbjct  293  DDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  357  TAFSRKNIGKLMATVFTEYKDSG---RRTPEG--RVILAKT----EEVINQATIQSALGR  407
            +  +R N+G+ MA +F E + +    R+  +G  + +  +T      +I+ ATIQS+LG 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  408  SFRITGIDSQAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGVQACIWGMVAV  467
             FRITG+++Q+E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  GV+A +WGM+ V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  468  MLFTLIYYRGFGlvanlalaanlvlIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLI  527
             LF +  YR FGL+A +ALA N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FERIREELRDGRNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSI  587
            F RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIVGTRCVINLVYGGKRVDKLSI  618
            GI+TSMFTAI+ TR ++NL+YGG+   KL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

323) Kvar_4022 in NC_013850


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1568),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 299/625 (48%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIVVGLIYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+VVG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALLTVLGDKYVVALNLAPATPRWLAALYAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNYGLSIVFRDSAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQAISYLSPRHRDLVISS---QGDNSLKAVMTDERLKEAREYAVQQNINILRNRVNQLG  231
            R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDS  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKETREG-QPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ E REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIL  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSL+ GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

324) secD in NC_009792


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1571),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 296/625 (48%), Positives = 449/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIVVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+VVG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDIQLRAREALVGVLGDKYVVALNLAPATPRWLAAIKAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKEDNYGLSITFRDNKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D+  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAISYLSGRHRDLVITS---QGNTVLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A + +     D+ IT+   +G  VLR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYKGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRINKLSI  604
            FTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

325) secD in NC_014121


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1571),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 300/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVILVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMGVLGDKYVVALNLAPATPRWLAALSAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  ++A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIAYTTVRKEDNYGMSITFRDSAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQAVDYLTQRHRDLVITA---QGSNQLRAVMTDARLKEAREYAVQQNINILRNRVNQLG  231
            R+QA   + +   D+ IT+   +G   LR  +T A+L E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRIPGDS  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKETREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ E REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKEEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIQQGLEACLAGLAVSILFMIF  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+    LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

326) secD in NC_004603


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 304/632 (49%), Positives = 455/632 (72%), Gaps = 24/632 (3%)

Query  1    MLNRYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTTALDK  59
            MLN+YPLWKY++++  ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   EHLSHKSIAFENGSI--LVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLEAIG  117
              ++ K+ ++ + +   L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKIRYRAIRPSGKEGVE  177
            A+P+KLGLDL GGVHFL+EVDMD A++  +   E   ++ LR  K+RYR++   G + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  178  VLLRDEEQLAEAKRTLTKNHPDMNFVESDSNGRYALIATFTEQRLQEIRNYAVEQNITIL  237
            + + D+ +  +A+  + K   D ++  ++ NG   L  ++T  +L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAG  291

Query  298  ngrapaGSEIKQDRDG-RPVV-LKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNK  355
             + + + +E+ + R+G RP   + + +I++G  +TDA +S DE GRPQVNI+LD++GG+ 
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  356  MSAFSKKNIGKLMATVFAE------YKDSGRKTPEGKV---ILTKHEEVINQATIQSALG  406
            MS  ++ N+G+ MA +F E      Y     +  E  V    +  +  +I+ ATIQS+LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  407  RNFRITGIDSAAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACVWGMVA  466
             +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  467  VMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVL  526
            V LF +  YR FGLIA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  527  IFERIREELRDGRSPQQAIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLS  586
            IF RIREE+ +G + Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  587  IGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI  618
            +GI+TSMFTAI+ TR +VNL+YGG+   KL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

327) SN31241_14070 in NC_021902


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QGGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   +G   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

328) secD in NC_019393


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 296/637 (47%), Positives = 457/637 (72%), Gaps = 42/637 (6%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTNATVEQVKAALNE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENDQI--LVRVSDSDTQLVTRETLEKTLGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + K+LGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDTLDKAEFFLRNQSRDL---TFNQID----DLT----LRAIFAESKLQEIRDNAV  226
             F D+          R+Q+R L   TF +++    +L     LR  ++ +KL EIR+ ++
Sbjct  181  GFGDDAE--------REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  227  KQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQK  286
            KQN+T +RNRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  287  NDIRDALNGRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISL  344
            +D +++        ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+L
Sbjct  293  DDSKGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  345  DSEGGNKMSRSTRGNIGKPMATVFIEYKST---------GERNDDGKLVFEKHEQVISVA  395
            D++GG+ MSR+TR+N+G++MA +FIE ++T         G  +D     F  + ++IS+A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  396  TIRAQLGSKFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQA  455
            TI++ LGS+F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  456  IIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGM  515
             + G+  V +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GM
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGM  523

Query  516  AVDANVLIFerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIK  575
            AVDANVLIF RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+K
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKL  612
            GF++T+ +GI TSMFTAI+VTR +VN + GG+   KL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

329) secD in NC_011138


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 296/637 (47%), Positives = 457/637 (72%), Gaps = 42/637 (6%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTNATVEQVKAALNE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENDQI--LVRVSDSDTQLVTRETLEKTLGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + K+LGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDTLDKAEFFLRNQSRDL---TFNQID----DLT----LRAIFAESKLQEIRDNAV  226
             F D+          R+Q+R L   TF +++    +L     LR  ++ +KL EIR+ ++
Sbjct  181  GFGDDAE--------REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  227  KQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQK  286
            KQN+T +RNRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  287  NDIRDALNGRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISL  344
            +D +++        ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+L
Sbjct  293  DDSKGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  345  DSEGGNKMSRSTRGNIGKPMATVFIEYKST---------GERNDDGKLVFEKHEQVISVA  395
            D++GG+ MSR+TR+N+G++MA +FIE ++T         G  +D     F  + ++IS+A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  396  TIRAQLGSKFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQA  455
            TI++ LGS+F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  456  IIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGM  515
             + G+  V +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GM
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGM  523

Query  516  AVDANVLIFerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIK  575
            AVDANVLIF RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+K
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKL  612
            GF++T+ +GI TSMFTAI+VTR +VN + GG+   KL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

330) secD in NC_021710


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 296/637 (47%), Positives = 457/637 (72%), Gaps = 42/637 (6%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTNATVEQVKAALNE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENDQI--LVRVSDSDTQLVTRETLEKTLGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + K+LGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDTLDKAEFFLRNQSRDL---TFNQID----DLT----LRAIFAESKLQEIRDNAV  226
             F D+          R+Q+R L   TF +++    +L     LR  ++ +KL EIR+ ++
Sbjct  181  GFGDDAE--------REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  227  KQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQK  286
            KQN+T +RNRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  287  NDIRDALNGRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISL  344
            +D +++        ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+L
Sbjct  293  DDSKGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  345  DSEGGNKMSRSTRGNIGKPMATVFIEYKST---------GERNDDGKLVFEKHEQVISVA  395
            D++GG+ MSR+TR+N+G++MA +FIE ++T         G  +D     F  + ++IS+A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  396  TIRAQLGSKFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQA  455
            TI++ LGS+F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  456  IIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGM  515
             + G+  V +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GM
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGM  523

Query  516  AVDANVLIFerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIK  575
            AVDANVLIF RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+K
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKL  612
            GF++T+ +GI TSMFTAI+VTR +VN + GG+   KL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

331) secD in NC_021717


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 296/637 (47%), Positives = 457/637 (72%), Gaps = 42/637 (6%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTNATVEQVKAALNE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENDQI--LVRVSDSDTQLVTRETLEKTLGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + K+LGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDTLDKAEFFLRNQSRDL---TFNQID----DLT----LRAIFAESKLQEIRDNAV  226
             F D+          R+Q+R L   TF +++    +L     LR  ++ +KL EIR+ ++
Sbjct  181  GFGDDAE--------REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  227  KQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQK  286
            KQN+T +RNRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  287  NDIRDALNGRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISL  344
            +D +++        ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+L
Sbjct  293  DDSKGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  345  DSEGGNKMSRSTRGNIGKPMATVFIEYKST---------GERNDDGKLVFEKHEQVISVA  395
            D++GG+ MSR+TR+N+G++MA +FIE ++T         G  +D     F  + ++IS+A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  396  TIRAQLGSKFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQA  455
            TI++ LGS+F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  456  IIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGM  515
             + G+  V +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GM
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGM  523

Query  516  AVDANVLIFerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIK  575
            AVDANVLIF RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+K
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKL  612
            GF++T+ +GI TSMFTAI+VTR +VN + GG+   KL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

332) secD in NC_021712


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 296/637 (47%), Positives = 457/637 (72%), Gaps = 42/637 (6%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTNATVEQVKAALNE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENDQI--LVRVSDSDTQLVTRETLEKTLGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + K+LGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDTLDKAEFFLRNQSRDL---TFNQID----DLT----LRAIFAESKLQEIRDNAV  226
             F D+          R+Q+R L   TF +++    +L     LR  ++ +KL EIR+ ++
Sbjct  181  GFGDDAE--------REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  227  KQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQK  286
            KQN+T +RNRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  287  NDIRDALNGRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISL  344
            +D +++        ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+L
Sbjct  293  DDSKGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  345  DSEGGNKMSRSTRGNIGKPMATVFIEYKST---------GERNDDGKLVFEKHEQVISVA  395
            D++GG+ MSR+TR+N+G++MA +FIE ++T         G  +D     F  + ++IS+A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  396  TIRAQLGSKFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQA  455
            TI++ LGS+F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  456  IIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGM  515
             + G+  V +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GM
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGM  523

Query  516  AVDANVLIFerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIK  575
            AVDANVLIF RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+K
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKL  612
            GF++T+ +GI TSMFTAI+VTR +VN + GG+   KL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

333) secD in NC_021714


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 296/637 (47%), Positives = 457/637 (72%), Gaps = 42/637 (6%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTNATVEQVKAALNE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENDQI--LVRVSDSDTQLVTRETLEKTLGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + K+LGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDTLDKAEFFLRNQSRDL---TFNQID----DLT----LRAIFAESKLQEIRDNAV  226
             F D+          R+Q+R L   TF +++    +L     LR  ++ +KL EIR+ ++
Sbjct  181  GFGDDAE--------REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  227  KQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQK  286
            KQN+T +RNRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  287  NDIRDALNGRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISL  344
            +D +++        ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+L
Sbjct  293  DDSKGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  345  DSEGGNKMSRSTRGNIGKPMATVFIEYKST---------GERNDDGKLVFEKHEQVISVA  395
            D++GG+ MSR+TR+N+G++MA +FIE ++T         G  +D     F  + ++IS+A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  396  TIRAQLGSKFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQA  455
            TI++ LGS+F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  456  IIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGM  515
             + G+  V +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GM
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGM  523

Query  516  AVDANVLIFerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIK  575
            AVDANVLIF RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+K
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKL  612
            GF++T+ +GI TSMFTAI+VTR +VN + GG+   KL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

334) secD in NC_021713


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 296/637 (47%), Positives = 457/637 (72%), Gaps = 42/637 (6%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTNATVEQVKAALNE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENDQI--LVRVSDSDTQLVTRETLEKTLGDDYYVAMNLAPDTPEWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + K+LGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDTLDKAEFFLRNQSRDL---TFNQID----DLT----LRAIFAESKLQEIRDNAV  226
             F D+          R+Q+R L   TF +++    +L     LR  ++ +KL EIR+ ++
Sbjct  181  GFGDDAE--------REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  227  KQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQK  286
            KQN+T +RNRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  287  NDIRDALNGRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISL  344
            +D +++        ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+L
Sbjct  293  DDSKGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  345  DSEGGNKMSRSTRGNIGKPMATVFIEYKST---------GERNDDGKLVFEKHEQVISVA  395
            D++GG+ MSR+TR+N+G++MA +FIE ++T         G  +D     F  + ++IS+A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  396  TIRAQLGSKFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQA  455
            TI++ LGS+F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  456  IIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGM  515
             + G+  V +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GM
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGM  523

Query  516  AVDANVLIFerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIK  575
            AVDANVLIF RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+K
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKL  612
            GF++T+ +GI TSMFTAI+VTR +VN + GG+   KL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

335) secD in NC_021716


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1570),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 296/637 (47%), Positives = 457/637 (72%), Gaps = 42/637 (6%)

Query  1    MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAV-VTNATVEQVKAALNE  59
            MLNK ++WK +  L V+ +  +Y+ PN+Y +D A+QIS++  A+ VT+A V++   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNISPKRVEFENDQI--LVRVSDSDTQLVTRETLEKTLGDDYYVAMNLAPDTPKWLEGLG  117
              I+ K   + ++    L+R+S  + QL +++ + K+LGDDY VA+NLA  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRTSLREEGIRYRGVKQVDDHIDI  177
            ++PMKLGLDL GGVHFL+EVDM   I   L   E+  ++ LR E +RYR++ Q+++ I++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TFRDEDTLDKAEFFLRNQSRDL---TFNQID----DLT----LRAIFAESKLQEIRDNAV  226
             F D+          R+Q+R L   TF +++    +L     LR  ++ +KL EIR+ ++
Sbjct  181  GFGDDAE--------REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  227  KQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQK  286
            KQN+T +RNRVN+LGVAEPLVQ+QGA+RIVV+LPG+QDTA AK IL  TA LEFR+    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  287  NDIRDALNGRVPPGSQVIEDQQG--IPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISL  344
            +D +++        ++++E ++G   +  +E+ +++TG ++ DA+++ DE G P+VNI+L
Sbjct  293  DDSKGT--------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  345  DSEGGNKMSRSTRGNIGKPMATVFIEYKST---------GERNDDGKLVFEKHEQVISVA  395
            D++GG+ MSR+TR+N+G++MA +FIE ++T         G  +D     F  + ++IS+A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  396  TIRAQLGSKFQITGLDSPKEardlalllragaliaPIQIVEERTVGPSLGKENIELGMQA  455
            TI++ LGS+F+ITGL++  E+ +LALLLRAG+L AP+ + EERT+GPSLG +NI  G++A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  456  IIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGM  515
             + G+  V +F++  Y+ FG++A +AL  N+VM++++MS++ GATLTLPG+AGIVLT+GM
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGM  523

Query  516  AVDANVLIFerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIK  575
            AVDANVLIF RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+K
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKL  612
            GF++T+ +GI TSMFTAI+VTR +VN + GG+   KL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

336) Tbd_2079 in NC_007404


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1569),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 284/621 (46%), Positives = 428/621 (69%), Gaps = 36/621 (5%)

Query  1    MNRYPLWKYLLIGVTLVVAFLYTLPNFFGEVPAVQVSPVRTSETVDTALLGRVEALLKTA  60
            +N+YPLWKY+LI   LVV+F+Y+ PN++ + +A+Q+S   T+  V  A ++R    L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   SLPTSGVELAGNSIKA--RFASTDVQIKAKDVLQNGLGERYTVALNLVSASPAWLSTLNA  118
            ++P  +  LA N+  +  R++  + Q+ AKDV++++LG+ Y VALNL  ++P WL  + A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFLLEVDMKAALEKAAVRYQNDFRTELRGDKIRYSRISREGNAVVVR  178
             PM LGLDL GGVHFLLEVDM  A++     Y+ + ++ LR +K+RY  +++ GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FATRDQRDAAADKLAAVFTDLGFAAEDLDDGFLLTARLKPEAEKQVQEFALQQNITTLRN  238
            F+   +R+ A   +   FTD+ +++ +L++  +L   L P    +++E++++QN+TT+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPVIQQQGANRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEQADPLLVEQG  298
            RVNELGVAEP++Q+QGANR+VV+LPGVQDTA AK ILG+TA LE R+     D+    +G
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS----KG  297

Query  299  QAPFGAEIVASREGGK--IAVKKDVVLTGDSITDAAPGFDSTSAQAAVHINLDGKGARIF  356
                 +E+   REGG+   AV +++++TGD +TDA ++FD   +++ V+INLDG G+ + 
Sbjct  298  ----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDE-HGRPQVNINLDGHGGELM  352

Query  357  KDVTRENVGKRMAILLIE------------KGIAEAITAPVIREEIG-----------GG  393
               TR NVG+ MA+++IE            +G+   +    ++E+             G+
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  394  RVQITGMETAQEASDValllragalaaPMQIVEERTVGPSMGAENIEKGFHSNIWGFLAV  453
            + +ITG++   E+S++ALLLRAG+LAAPM + EERT+GPS+GA+NI KG ++++WG L V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  454  VAFMTIYYRVFGLFSSVALAINGFFLIALLSMLQATLTLPGMAAIALTLGMAIDANVLIN  513
              F+   YR FGL+++VALA+N   L+AL+S+L ATLTLPG+A+I LT+GMA+DANVLI 
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  514  ERIREELRNGATPQAAIHAGYDRAWGTILDSNLTTLIAGIALFWLGSGPVRGFAVVLCLG  573
             RIREE+ NG T Q AI  G+DRA  +ILD+NLTTL+ G  LF +G+GPV+GFAV + LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  574  ILTSMFSAVTVSRAMVNLTYG  594
            I+TSMF+A+ V+RAMVNL YG
Sbjct  593  IFTSMFTAIMVTRAMVNLIYG  613

337) secD in NC_020211


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1569),  Expect = 9e-118, Method: Compositional matrix adjust.
 Identities = 293/622 (48%), Positives = 445/622 (72%), Gaps = 29/622 (4%)

Query  1    MLIVVILVGLLYALPNIYGEDPAVQITGAR-GVAASETTLDQVRTVLEKDNIASKSIALE  59
            +++ V++VG++Y+ PN+Y +D+A+QI+GA  ++  +++ +D+    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFKDPDVQLRAREALVTELGDKFVVALNLAPATPTWLAMLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +   LGD +VVALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALSKLQEQTMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQ  177
            GGVHFL+EVDMD A+        + +++ LR   + Y S+ +L+N  +++ F DDA R+Q
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQLGFGDDAEREQ  190

Query  178  AISYIGPRQRDLVLSA---NGANTMKANLTDARLSEAREYAVQQNITILRNRVNQLGVAE  234
            A + +     D+ +++   NG   ++  LT A+L+E REY+++QN+T +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVntnadataaanGRVPGDSEV-  293
            PLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+ +   G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMF  302

Query  294  KYTRDGQPIVLYKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAGGTSMSNFTKDNIGK  352
             +  +G+P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG  MS  T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRAVLVKQEEVINVANIQSRLGNSFRITGIGN  402
            +MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG+  
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWYR  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   +F++  YR
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGVIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELK  522
             FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ 
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIHEGYKGAFSSIVDANITTLITAVILYAVGTGSIKGFAITTAIGVATSMFTA  582
            NG +VQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLLYGGKRINKLSI  604
            I+ TRA+VNL+YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

338) secD in NC_018697


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  417 bits (1569),  Expect = 9e-118, Method: Compositional matrix adjust.
 Identities = 288/630 (46%), Positives = 454/630 (73%), Gaps = 23/630 (3%)

Query  1    MTNHFPAWKNLMIIMALVVAIIYALPNLYGEDPSVQISPLRGAV-INSSVLADVKDQLAQ  59
            M N +P WK ++I+  LVV++IY+ PNLY +D+++QIS    A+ +  + +      L++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NGVALLKGELNDSQI--LLRFKHSNDQLKAVDIIKSVLGNNYVVALNLAPTTPQWLRSLN  117
             G+++  + L ++    LLR+   +DQL A D+++  LG++YVVALNLA TTP+WLR++ 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMYLGLDLRGGVHFLLEVDMQAAEKQAVDRGAADFRQYLRENKLRYLSVMVNGHNVGI  177
            A+PM LGLDL GGVHFLLEVDM+ A    +    ++ +  LR +K+RY S+   G+ + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  KFRNQQIHDEAISKLESQFRTWDFKPEVSESSTPTLTATMSDDELMDVRNYAVQQNIITL  237
             F ++  +++A + +   F   ++ P    ++ P L  +++   L ++R+Y+++QN+ T+
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPA-ELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  KNRVNELGVAEPVIQRQGESRIVVELPGVQDTARAKEILGATATLEYHLVDTQNSVSSAL  297
            +NRVNELGVAEP++QRQG +RIVVELPGVQDTA AK ILG TA LE++L    +   ++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  298  AGRVPIGSKLYNRRDGGQ--ILLKKQVIVTGNEIVDASSGIEGDTGSAMVSVSLDGPGGK  355
                   + +++ R+GG+    + + +I+TG+++ DA ++++ + G + V+++LDG GG 
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGGE  350

Query  356  KMSKTTRENIGKPMAVVFIENRTDI----KMVNG--EPVRYKTVVEE--VINVATIRGHF  407
             MS++TR N+G++MAV+FIE+R       +MVNG    V  +T  E+  +I++ATI++ +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  408  SNRFQTTGLDNSaeardlalllragalaaPIDIVEERTVGPSLGQDNIDKGFNSVMIGFV  467
            +++F+ TGL+  +E+ +LALLLRAG+LAAP+ + EERT+GPSLG DNI KG ++ + G +
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  468  LVLIFMAIYYKTFGLFADVALAFNLVFIVAVLSLLQATLTLPGIAGIVLTVGMAVDANVL  527
            +V +F+   Y+ FGL+A VALAFN+V ++A++SLL ATLTLPGIAGIVLT+GMAVDANVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  528  IFERIKEEIKNGNSPQASIAAGYDKAFStiadanittliaaiiLFGFGTGPIKGFAITLS  587
            IF RI+EEI NG + Q +I+ G+D+A+++I DAN+TTL+ + ILF+ GTGP+KGFA+T+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  588  IGILTSMFTAIIGTRALVNVTFGSRQIEKL  617
            +GI+TSMFTAI+ TRA+VN+ +G+R++ KL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

339) KPHS_10990 in NC_016845


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1567),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 297/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIVVGLIYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+VVG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALLNVLGDKYVVALNLAPATPRWLAALYAEPMKLGLDLR  117
            E +   L R+   + QL A++ + + LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNYGLSIVFRDSAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQAISYLSPRHRDLVISS---QGDNSLKAVMTDERLKEAREYAVQQNINILRNRVNQLG  231
            R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDS  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIL  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSL+ GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

340) secD in NC_009648


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1567),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 297/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIVVGLIYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V+VVG+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALLNVLGDKYVVALNLAPATPRWLAALYAEPMKLGLDLR  117
            E +   L R+   + QL A++ + + LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNYGLSIVFRDSAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQAISYLSPRHRDLVISS---QGDNSLKAVMTDERLKEAREYAVQQNINILRNRVNQLG  231
            R+QA + +     D+ I++   +G   L+  +T  +L E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDS  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAILAKEEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIL  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+++++++MSL+ GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSM  579
            E++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRVKKLSI  604
            FTAI+ TRA+VNL+YGG+  KKL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

341) secD in NC_009832


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1566),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 302/631 (48%), Positives = 457/631 (73%), Gaps = 29/631 (4%)

Query  1    MLNRYPLWKYlmlivviiigllYALPNLYGEDPAVQITGAR-GVAASETTLDQVRTVLEK  59
            MLN+YPLWKY++++ V+++G++Y+ PNLY +D+A+QI+GA  ++  +++ +D+    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DKIASKSIALENGAI--LARFSNPDIQLRAREALMAELGDKFVVALNLAPATPAWLAMLG  117
              I+ K+ +L + +   L R+S+ + QL A++ +   LGD +VVALNLA +TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQTMDTLRSELREKGIPYASIRKLDNNGVE  177
            A PMKLGLDL GGVHFL+EVDMD A+        + +++ LR   + Y S+ +L+N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQ  179

Query  178  VRFRDDAARDQAISYLGPRQRDMVFSA---NGTNTLKANLTDARLSEAREYAVQQNITIL  234
            + F DDA R+QA + +     D  +++   NG   L+  LT A+L+E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVntnadttaaa  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAG  291

Query  295  nGRVPGDSEVKDTREG--QPVVLYKRVILTGDHITDSTSSTDEYNQPQVNISLDSTGGTA  352
             +   G +E+ + REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ GG  
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINVANIQSRL  402
            MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS L
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPL  410

Query  403  GNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLV  462
            G+ FRITG+    E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  463  ASIVFMVVWYRKFGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANV  522
               +F++  YR FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  523  LINERIKEELKNGRSVQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITT  582
            LI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  583  AIGVATSMFTAIVGTRAIVNLLYGGKRINKL  613
            ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

342) secD in NC_017390


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1567),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 291/631 (47%), Positives = 457/631 (73%), Gaps = 29/631 (4%)

Query  1    MLNRYPLWKYIMlivvllvgllyalpnlYGEDPAVQVTGARGS-AASEQTLVQIQSALKQ  59
            MLN+YPLWKY++++ VL+VG++Y+ PNLY +D+A+Q++GA  +   ++  + +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSVALENGAI--LARFANTDVQLRAREAIINVLGDDYVVALNLAPATPAWLAMLS  117
              I  K+ +L + +   L R+++ + QL A++ + + LGDDYVVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVRKTANYGME  177
            A PMKLGLDL GGVHFL+EVDMD A++       +++++ LR   + Y ++ + +N  ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  IRFRDDKARDEAVSYLITRHRDMVINGS---GSNALTAVMSDERMREAREYAVQQNINIL  234
            + F DD  R++A + +     D  I  +   G   L   ++  ++ E REY+++QN+  +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDATAAA  294
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL      ++++ 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL------GAGPD  293

Query  295  NGRVPGDSEVKNTRD--KQPVVLYKRVILTGDHITDSTSSNDEYNQPQVNISLDSAGGNI  352
            +++  G +E+ + R+  + +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++
Sbjct  294  DSK--GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MSNFTKDSVGKAMATLFVE------YK----DSGKKDANGRAILEKHEEVINVANIQSRL  402
            MS  T+ +VG++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS L
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPL  410

Query  403  GNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEACLWGLI  462
            G+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP++GA+NIT+G++A LWG++
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  463  ASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANV  522
               +F++  Y+ FGL+AT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  523  LINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITT  582
            LI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  583  AIGVATSMFTAIIGTRAIVNLMYGGKRINKL  613
            ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

343) SBOV03601 in NC_022241


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 293/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

344) secD in NC_022221


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 293/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

345) secD in NC_016831


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 293/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

346) SU5_01099 in NC_017623


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 293/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

347) secD in NC_006511


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 293/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

348) secD in NC_012125


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 293/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

349) STBHUCCB_25980 in NC_016832


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 293/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

350) secD in NC_021176


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 293/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

351) secD in NC_017445


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  416 bits (1564),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 283/622 (46%), Positives = 447/622 (72%), Gaps = 29/622 (4%)

Query  1    MLIVVLLVGLLYALPNLYGEDPAVQVTGARGS-AASEQTLVQIQSALKQDNIQSKSVALE  59
            +++ VL+VG++Y+ PNLY +D+A+Q++GA  +   ++  + +   AL +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFANTDVQLRAREAIINVLGDDYVVALNLAPATPAWLAMLSAEPMKLGLDLR  117
            + +   L R+++ + QL A++ + + LGDDYVVALNLA +TP WL  ++A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVRKTANYGMEIRFRDDKARDE  177
            GGVHFL+EVDMD A++       +++++ LR   + Y ++ + +N  +++ F DD  R++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVSYLTTRHRDMVINGS---GSNALTAVMSDERMREAREYAVQQNINILRNRVNQLGVAE  234
            A + +     D  I  +   G   L   ++  ++ E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDATAAANGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL      ++++ +++  G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL------GAGPDDSK--GTTEMF  302

Query  295  NTRD--KQPVVLYKRVILTGDHITDSTSSNDEYNQPQVNISLDSAGGNIMSNFTKDSVGK  352
            + R+  + +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ +VG+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  AMATLFVE------YK----DSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINN  402
            +MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG+N 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK  462
              E+ +L+LLLRAG+L AP+ + EERTIGP++GA+NIT+G++A LWG++   +F++  Y+
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR  522
             FGL+AT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ 
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTA  582
            NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IIGTRAIVNLMYGGKRINKLSI  604
            I+ TRA+VNL+YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

352) secD in NC_021500


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1562),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 296/625 (48%), Positives = 449/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQNDLQKEKINAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  + L    I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREVLVSALGDQYVVALNLAPATPRWLTAIKAEPMKLGLDLR  117
            E +   L R+   + QL A++V+  ALGD+YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMQTALS---KLQEQNMDSLRSDLRDKGIPYTTVRKEDNYGLSIQFRDSAA  174
            GGVHFL+EVDM+ A+    K+ E ++ +L   LR   + Y ++ + +N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQANAYLTARHRDLVISN---QGDNVLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R+QA A +     D+ I+    +G  VLR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNssvdasaaaaGRVPGDS  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  ++ D+         G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLAGLVVSIIFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NIT+G++A L G++   +F++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRSVQQAIHEGYQGAFSSIFDANVTTLIKVLILYAVGTGSIKGFAITTGIGVATSM  579
            E++NG +VQ+AI EG++ A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRINKLSI  604
            FTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

353) secD in NC_012214


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1562),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 283/622 (46%), Positives = 447/622 (72%), Gaps = 29/622 (4%)

Query  1    MLIVVLLVGLLYALPNLYGEDPAVQVTGARGS-AASEQTLVQIQSALKQDNIQSKSVALE  59
            +++ VL+VG++Y+ PNLY +D+A+Q++GA  +   ++  + +   AL +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFANTDVQLRAREAIINVLGDDYVVALNLAPATPAWLAMLSAEPMKLGLDLR  117
            + +   L R+++ + QL A++ + + LGDDYVVALNLA +TP WL  ++A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVRKTANYGMEIRFRDDKARDE  177
            GGVHFL+EVDMD A++       +++++ LR   + Y ++ + +N  +++ F DD  R++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVSYLITRHRDMVINGS---GSNALTAVMSDERMREAREYAVQQNINILRNRVNQLGVAE  234
            A + +     D  I  +   G   L   ++  ++ E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDATAAANGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL      ++++ +++  G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL------GAGPDDSK--GTTEMF  302

Query  295  NTRD--KQPVVLYKRVILTGDHITDSTSSNDEYNQPQVNISLDSAGGNIMSNFTKDSVGK  352
            + R+  + +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ +VG+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  AMATLFVE------YK----DSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINN  402
            +MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG+N 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK  462
              E+ +L+LLLRAG+L AP+ + EERTIGP++GA+NIT+G++A LWG++   +F++  Y+
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR  522
             FGL+AT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ 
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTA  582
            NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IIGTRAIVNLMYGGKRINKLSI  604
            I+ TRA+VNL+YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

354) secD in NC_007146


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1562),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 280/632 (45%), Positives = 456/632 (73%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++ +G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSIVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLA--NVSQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  232
            I L+  + ++R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  292
             +R+RV ELGVAE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  293  ISRNMLPADSEVKYDRQGHPVALFKRA-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  351
             + +M+       +   G+P A   R+ ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  352  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  402
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  462
            +GS+F+ITG+++ +E+ +L+ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  VAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDAN  522
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  582
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  614
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

355) HIBPF01820 in NC_014920


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1563),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 279/632 (45%), Positives = 456/632 (73%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++ +G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSIVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLA--NVSQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  232
            I L+  + ++R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  292
             +R+RV ELGVAE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  293  ISRNMLPADSEVKYDRQGHPVALFKRA-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  351
             + +M+       +   G+P A   R+ ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  352  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  402
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGVDSIAEAHNFSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  462
            +GS+F+ITG+++ +E+ +++ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  VAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDAN  522
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRSIQQAINEGYNSAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  582
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  614
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

356) secD in NC_017452


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1562),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 280/632 (45%), Positives = 456/632 (73%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++ +G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSIVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLA--NVSQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  232
            I L+  + ++R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  292
             +R+RV ELGVAE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  293  ISRNMLPADSEVKYDRQGHPVALFKRA-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  351
             + +M+       +   G+P A   R+ ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  352  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  402
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  462
            +GS+F+ITG+++ +E+ +L+ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  VAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDAN  522
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  582
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  614
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

357) secD in NC_016944


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1561),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 310/630 (50%), Positives = 454/630 (73%), Gaps = 21/630 (3%)

Query  1    MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK  59
            MLN+YPLWKY++++  + V+ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG  117
            A ++ K+ +L + +   L+R++  + Q++A+D++  ALG D +VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L++ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR  237
             + D  +  Q++ L+     D  +T +E +G  VL   +T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaaa  297
            NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD  293

Query  298  grapaGSEIKFDRNGRP-VVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS  356
            +   +   + F   GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ MS
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  AFSKKNIGKLMATVFAE------YKDSGKRSPEGKV---ILTKHEEVINQATIQSALGRN  407
              ++ N+G+ MA +F E      Y      + E  V    +  +  +I+ ATIQS+LG +
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  408  FRITGIDSPAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM  467
            FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  468  LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVlif  527
            LF +  YR FG+IA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  528  erireelreGKNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIG  587
             RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  588  ILTSMFTAIVGTRCIVNLLYGGKRINKLSI  617
            I+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

358) secD in NC_012578


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1561),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 310/630 (50%), Positives = 454/630 (73%), Gaps = 21/630 (3%)

Query  1    MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK  59
            MLN+YPLWKY++++  + V+ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG  117
            A ++ K+ +L + +   L+R++  + Q++A+D++  ALG D +VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L++ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR  237
             + D  +  Q++ L+     D  +T +E +G  VL   +T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaaa  297
            NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD  293

Query  298  grapaGSEIKFDRNGRP-VVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS  356
            +   +   + F   GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ MS
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  AFSKKNIGKLMATVFAE------YKDSGKRSPEGKV---ILTKHEEVINQATIQSALGRN  407
              ++ N+G+ MA +F E      Y      + E  V    +  +  +I+ ATIQS+LG +
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  408  FRITGIDSPAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM  467
            FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  468  LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVlif  527
            LF +  YR FG+IA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  528  erireelreGKNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIG  587
             RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  588  ILTSMFTAIVGTRCIVNLLYGGKRINKLSI  617
            I+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

359) secD in NC_012668


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1561),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 310/630 (50%), Positives = 454/630 (73%), Gaps = 21/630 (3%)

Query  1    MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK  59
            MLN+YPLWKY++++  + V+ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG  117
            A ++ K+ +L + +   L+R++  + Q++A+D++  ALG D +VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L++ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR  237
             + D  +  Q++ L+     D  +T +E +G  VL   +T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaaa  297
            NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD  293

Query  298  grapaGSEIKFDRNGRP-VVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS  356
            +   +   + F   GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ MS
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  AFSKKNIGKLMATVFAE------YKDSGKRSPEGKV---ILTKHEEVINQATIQSALGRN  407
              ++ N+G+ MA +F E      Y      + E  V    +  +  +I+ ATIQS+LG +
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  408  FRITGIDSPAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM  467
            FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  468  LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVlif  527
            LF +  YR FG+IA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  528  erireelreGKNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIG  587
             RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  588  ILTSMFTAIVGTRCIVNLLYGGKRINKLSI  617
            I+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

360) secD in NC_016445


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1561),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 310/630 (50%), Positives = 454/630 (73%), Gaps = 21/630 (3%)

Query  1    MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK  59
            MLN+YPLWKY++++  + V+ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG  117
            A ++ K+ +L + +   L+R++  + Q++A+D++  ALG D +VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L++ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR  237
             + D  +  Q++ L+     D  +T +E +G  VL   +T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaaa  297
            NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD  293

Query  298  grapaGSEIKFDRNGRP-VVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS  356
            +   +   + F   GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ MS
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  AFSKKNIGKLMATVFAE------YKDSGKRSPEGKV---ILTKHEEVINQATIQSALGRN  407
              ++ N+G+ MA +F E      Y      + E  V    +  +  +I+ ATIQS+LG +
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  408  FRITGIDSPAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM  467
            FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  468  LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVlif  527
            LF +  YR FG+IA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  528  erireelreGKNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIG  587
             RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  588  ILTSMFTAIVGTRCIVNLLYGGKRINKLSI  617
            I+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

361) secD in NC_002505


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1561),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 310/630 (50%), Positives = 454/630 (73%), Gaps = 21/630 (3%)

Query  1    MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK  59
            MLN+YPLWKY++++  + V+ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  + AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG  117
            A ++ K+ +L + +   L+R++  + Q++A+D++  ALG D +VALNLA +TP WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L++ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR  237
             + D  +  Q++ L+     D  +T +E +G  VL   +T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaaa  297
            NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD  293

Query  298  grapaGSEIKFDRNGRP-VVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS  356
            +   +   + F   GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ MS
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  AFSKKNIGKLMATVFAE------YKDSGKRSPEGKV---ILTKHEEVINQATIQSALGRN  407
              ++ N+G+ MA +F E      Y      + E  V    +  +  +I+ ATIQS+LG +
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  408  FRITGIDSPAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM  467
            FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  468  LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVlif  527
            LF +  YR FG+IA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  528  erireelreGKNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIG  587
             RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  588  ILTSMFTAIVGTRCIVNLLYGGKRINKLSI  617
            I+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

362) secD in NC_009567


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1561),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 279/632 (45%), Positives = 456/632 (73%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++ +G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSIVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ ++  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLA--NVSQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  232
            I L+  + ++R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  292
             +R+RV ELGVAE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  293  ISRNMLPADSEVKYDRQGHPVALFKRA-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  351
             + +M+       +   G+P A   R+ ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  352  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  402
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  462
            +GS+F+ITG+++ +E+ +L+ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  VAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDAN  522
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  582
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  614
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

363) secD in NC_000907


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  415 bits (1561),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 279/632 (45%), Positives = 456/632 (73%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++ +G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSIVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ ++  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLA--NVSQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  232
            I L+  + ++R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  292
             +R+RV ELGVAE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  293  ISRNMLPADSEVKYDRQGHPVALFKRA-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  351
             + +M+       +   G+P A   R+ ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  352  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  402
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  462
            +GS+F+ITG+++ +E+ +L+ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  VAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDAN  522
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  582
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  614
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

364) secD in NC_022356


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  414 bits (1560),  Expect = 5e-117, Method: Compositional matrix adjust.
 Identities = 279/632 (45%), Positives = 454/632 (72%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++ +G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSVVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLA--NVNQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  232
            I L+  +  +R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVAELGVVEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  292
             +R+RV ELGV E+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  293  ISRNMLPADSEVKYDRQGHPVALFKRA-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  351
             + +M+       +   G+P A   R+ ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  352  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  402
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  462
            +GS+F+ITG+++ +E+ +L+ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  VAVIAFMLFYYKMFGVIASFALVINIVLLMGLMSILPGATLSMPGIAGIVLTLGMSVDAN  522
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  582
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  614
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

365) secD in NC_017451


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  414 bits (1559),  Expect = 5e-117, Method: Compositional matrix adjust.
 Identities = 280/632 (45%), Positives = 455/632 (72%), Gaps = 30/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++ +G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSIVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLA--NVSQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  232
            I L+  + ++R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  ILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  292
             +R+RV ELGVAE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  293  ISRNMLPADSEVKYDRQGHPVALFKRT-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  351
             + +M+       +   G+P A   R  ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  352  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  402
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  403  FGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  462
            +GS+F+ITG+++ +E+ +L+ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  463  VAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDAN  522
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  582
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  614
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

366) PC1_1021 in NC_012917


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  414 bits (1559),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 289/622 (47%), Positives = 444/622 (72%), Gaps = 29/622 (4%)

Query  1    MLVVVLFVGLLYALPNLYGEDPAVQVTGARGT-AASETTLIQVQNVLKEQNITSKSIALE  59
            +++ VL VG++Y+ PNLY +D+A+Q++GA  +   +++ + +  + L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSNPDIQLRAREALVNELGEKFVVALNLAPATPNWLRLLGAEPMKLGLDLR  117
            + +   L R+S+ + QL A++ + + LG+ +VVALNLA +TPNWLR +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKNIPYASVRKIDNYGVEIRFRDAQTRDD  177
            GGVHFL+EVDMD A++       + +++ LR  ++ Y S+ +++N  +++ F D   R++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  GINYLT---SRHRnlvlsssgsnllRAVMSDERLREAREYAVQQNINILRNRVNQLGVAE  234
            +   +    +         +G  +LR  ++  +L E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVK  294
            PLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D+         G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEMF  302

Query  295  NMRDGS-PVVLFKR-VILTGDHITDSTSSNDEYNRPQVNISLDSAGGNTMSNFTKDSIGK  352
            + R+G+ P     R +I+TGD++TD+ +S DE  RPQVNI+LD+ GG+ MS  T+ ++G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  LMATLFVE------YK----DSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDN  402
             MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG++ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   LF++ +Y+
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGVIATSALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELS  522
             FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTA  582
            NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLLYGGKRINKLSI  604
            I+ TRA+VNL+YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

367) secD in NC_016860


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  414 bits (1559),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 292/625 (47%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKIPAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  IP K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDIDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKA  174
            GGVHFL+EVD+D A++   K+ E ++ +L   LR   + Y ++ +  N  + + F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDEAIAYLTPRHRDLVISS---QSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLG  231
            R++A A +     D+ I++   ++   LR  +T A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  ISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF  459
            ++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG TVQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIIGTRAIVNLLYGGKRVTKLSI  604
            FTAI+ TRA+VNL+YGG+   KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

368) D782_3448 in NC_020063


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  414 bits (1557),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 446/625 (72%), Gaps = 35/625 (5%)

Query  1    MLVVVIIVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQNTLQQEKITAKSVALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  ++L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDVQLRAREALLSVLGDKYVVALNLAPATPRWLAAIKAEPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKNIPYSNIRKSENYGLTIQFRDSAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR  ++ Y ++ +  N  + + F D A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQANTYLTSRHRDLVITN---QGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLG  231
            R+QA + +     D+ IT    +G   LR  ++ A+L+E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKQTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNTMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG+ MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRSVLVKQEEVINIANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  INNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLAVSILFMIF  459
            +N   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+    LF++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  FYKKFGLIATSALIANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKE  519
            +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELSNGRSVQQAINEGYAGAFSSIFDANITTLIKVLILYAVGTGAIKGFAITTGIGVATSM  579
            E++NG +VQ+AI+EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRINKLSI  604
            FTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

369) secD in NC_006840


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  414 bits (1558),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 302/632 (48%), Positives = 462/632 (74%), Gaps = 24/632 (3%)

Query  1    MLNRFPLWKYLMVVSVLLISALYALPNLYGEDPAVQITGSRGT-EVQASTLDVVAENLKN  59
            MLN++PLWKY+++++VL+++ +Y+ PNLY +D+A+QI+G+  + +V  + +D  A  L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NDIAYKSIAFENGS--VLVRFNDTDAQISARDIINESLGKDYVVALNLAPLTPDWLTSIG  117
             +I+ K+ ++ + +   L+R++  + Q++A+D++  +LG DYVVALNLA  TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMSKLIGQQEESFRTDLREAKIRYRAIRDSGKDSVE  177
            A+PMKLGLDL GGVHFL+EVDMD A+   +   E   ++ LR  K+RYR++ + G + ++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  178  VVLRNEEQLAEAKKVLSDAHRDMTFVESESNGQFKLIATFTEQRLQEIRNYAVEQNITII  237
            + + ++ +  +A+ ++  +  D  +  +E NG   L  ++T  +L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAG  291

Query  298  sgrapaGSEIKEDRNG-RPVV-LKKRIILGGASITDASSSADEYGRPQVNISLDSEGGSK  355
            ++ + + +E+ E R+G RP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG  
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  356  MTAFSRKNIGKLMATVFTEYKDSG---RRTPEG--RVI----LSKTEEVINQATIQSALG  406
            M+  +R N+G+ MA +F E + +    R+  +G  + +    +     +I+ ATIQS+LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  407  RSFRITGIDSQAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVA  466
              FRITG+++Q+E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  467  VMIFTLVYYRGFGlvanlalmanlvlIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVL  526
            V +F +  YR FGL+A +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  527  IFERIREELRDGRNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLS  586
            IF RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  587  IGILTSMFTAIVGTRCVINLVYGGKRVDKLSI  618
            +GI+TSMFTAI+ TR ++NL+YGG+   KL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

370) HIB_02950 in NC_016809


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  414 bits (1557),  Expect = 9e-117, Method: Compositional matrix adjust.
 Identities = 280/632 (45%), Positives = 455/632 (72%), Gaps = 31/632 (4%)

Query  1    MLNRYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQ-EANTSVLGQVQDVLKT  59
            MLN+YPLWK ++++ ++ +G++YS PN+Y +D+A+QISG+    +   + +++    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLPTKSIVLENGSI--LARFTNTDDQLLAKDKIAERLGnnyttalnlapatpaWLSMFG  117
              +P K+  L + +   L R+++ +DQL AKD +   LG++Y  ALNLA +TP WL   G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIKNTEHFGTL  177
            A PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK++Y   ++  ++G +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRY---RSLPQLGNV  177

Query  178  ITLAV---SQRAKAERIIRQLHPTLDITEPDADSI---NLGLSTAALNEARDLAIEQNLT  231
            I L+    ++R +A  ++R+    ++IT ++ ++I    ++L+ A L E R+ +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  232  ILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNQNVTADA  291
             +R+RV ELGVAE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR+      + +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  292  ISRNMLPADSEVKYDRQGHPVALFKRA-VLGGEHIINSSSGLDQHSSTPQVSVTLDSEGG  350
             + +M+       +   G+P A   R+ ++ G+++ ++ +++D+H+  PQV++ LD++GG
Sbjct  298  TT-EMF------EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  351  EIMSQTTKKYYKKPMATLYVE------YKD---NGKKDENGKTILEKHEEVINVATIQGR  401
            E+MS++T+    ++MA +++E      Y     NG   +     +  +  +I++ATIQ+ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGL  461
            +GS+F+ITG+++ +E+ +L+ LL++G+L AP+ + EERTIGPSLGA+N+ +G++ASLWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  VAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSVDAN  521
            + V  F++  Y+ FG+IA+ AL +N+V+L++LMS+L GATL++PGIAGIVLT+GM+VDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAIT  581
            VLIF RI+EEI NG ++Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  LSLGVAISMFTAITGTRALVNALYGGKQLKKL  613
            +SLG+  SMFTAI  TRA+VN +YGG+++KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

371) PCC21_010540 in NC_018525


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  413 bits (1554),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 288/622 (47%), Positives = 443/622 (72%), Gaps = 29/622 (4%)

Query  1    MLVVVLFVGLLYALPNLYGEDPAVQVTGARGT-AASETTLIQVQNVLKEQNITSKSIALE  59
            +++ VL VG++Y+ PNLY +D+A+Q++GA  +   +++ + +  + L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSNPDVQLRAREALVNELGEKFVVALNLAPATPTWLRLLGAEPMKLGLDLR  117
            + +   L R+S+ + QL A++ + + LG+ +VVALNLA +TP WLR +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDSLRSDLREKNIPYASVRKIDNYGVEIRFRDAQTRDE  177
            GGVHFL+EVDMD A++       + +++ LR  ++ Y S+ +++N  +++ F D   R++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  GINYLT---TRHRnlvlsssgsnllRAVMSDERLREAREYAVQQNINILRNRVNQLGVAE  234
            +   +    T         +G  +LR  ++  +L E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVK  294
            PLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D+         G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEMF  302

Query  295  NMRDGS-PVVLFKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAGGNTMSNFTKDSIGK  352
            + R+G+ P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG+ MS  T+ ++G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  LMATLFVE------YK----DSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDN  402
             MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG++ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   LF++ +Y+
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGVIATSALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELS  522
             FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTA  582
            NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLLYGGKRINKLSI  604
            I+ TRA+VNL+YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

372) Entcl_3406 in NC_014618


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  413 bits (1553),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 293/626 (47%), Positives = 447/626 (72%), Gaps = 37/626 (5%)

Query  1    MLVVVIIGGLLYALPNLYGEDPAVQITGVR-GVAASEQTLIQVQKTLQEEKITAKSVALE  59
            +++ V++ G++Y+ PNLY +D+A+QI+G   ++  ++  + +  K+L +  I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALVSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLR  117
            E +   L R+   + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNIDSLRSDLREKGIPYTTVRKEDNFGLSITFRDGAA  174
            GGVHFL+EVDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D+A 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RDQAIDYLTARHRDLVISS---QGSNQLRAVMTDTRLKEAREYAVQQNINILRNRVNQLG  231
            R+QA   +     D+ I++   +G   LR  +T ++L E REY+++QN+  +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPVVQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDS  291
            VAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTT  299

Query  292  EVKDTREG-QPVVLYKR-VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDN  349
            E+ + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDAKGRAILVKQEE-VINIANIQSRLGNSFRIT  398
            +G++MA +F+E      Y     ++  KD   +++  K++  +I++A IQS LG+ FRIT
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRIT  417

Query  399  GISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLLASVIFMI  458
            G++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G+L   +F++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  459  LFYKKFGLIATSALIANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIK  518
             +Y+ FGLIAT AL  N+V+++++MSLL GATL++PGIAGIVLT+++AVDANVLI  RI+
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  519  EELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGVATS  578
            EE++NG TVQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TS
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  579  MFTAIVGTRAIVNLLYGGKRINKLSI  604
            MFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  597  MFTAIMVTRAMVNLIYGGRDFKKLWI  622

373) N646_2747 in NC_022349


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  412 bits (1552),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 299/620 (49%), Positives = 442/620 (72%), Gaps = 22/620 (3%)

Query  1    MVLFAIITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTTALNKEQLSHKSIALE  59
            ++L  ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  + AL    ++ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   DGS--VLVRFNDTDTQISARDVISEALGKDTIVALNLAPSTPDWLEAIGASPLKLGLDLR  117
            + +   L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL  +GA+P+KLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKIRYRAIRPSGKEAVEVLLRNEEQLAE  177
            GGVHFL+EVDMD A++  +   E   ++ LR  K+RYR++   G + +++ + ++ +  +
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQLGFGDDAEREQ  190

Query  178  AKATLEKNHPDMIFVDSDSNGRYALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAE  237
            A+A + K   D  +  ++ NG   L  ++T  +L EIR+Y++ QN+T +RNRVNELGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  238  PLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGRAPAGSEIK  297
            PLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR       L+A++++   +   + 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPDDSKGTTEMFE  303

Query  298  MDRDGRPVV-LKKRVILGGQSITDASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKL  356
               +GRP   + + +I+ G+ +TDA +S DE GRPQVNI+LD++GG+ MS  ++ N+G+ 
Sbjct  304  FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRS  363

Query  357  MATVFAE------YKDSGRRTPEGKVILDKHEE---VINQATIQSALGRNFRITGIDSAA  407
            MA +F E      Y        E  V ++   E   +I+ ATIQS+LG +FRITG+++ +
Sbjct  364  MAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQG  423

Query  408  EahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRGF  467
            E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V LF +  YR F
Sbjct  424  ESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFF  483

Query  468  GLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREEIRDG  527
            GLIA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF RIREEI +G
Sbjct  484  GLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANG  542

Query  528  RSPQQAIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLSIGILTSMFTAII  587
             + Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S+GI+TSMFTAI+
Sbjct  543  MTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIM  602

Query  588  GTRCIVNLIYGGKRVDKLSI  607
             TR +VNLIYGG+   KL I
Sbjct  603  VTRAMVNLIYGGRDFKKLWI  622

374) Hneap_2184 in NC_013422


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  412 bits (1551),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 290/624 (47%), Positives = 455/624 (73%), Gaps = 22/624 (3%)

Query  1    MNRYPWWKNlliilvlllgiFFALPNIYGENPALQISKRNavmdqaavdkavaalkaaN-  59
            +N+YP WK +LI+ VL++G++++ PN+Y +++A+QIS  ++ ++ +  D   AA   ++ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   -IPVKSARLED--KDGLIQFTSTDAQLKAVNVVREALGENYPVALNLAPAAPRWMQNLGA  116
             IPVK++ L +  K+GL++++  + QL A +VVR ALG++Y VALNLA ++P W++N+GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  117  KPMYLGLDLRGGVHFLMQIDMQAAIKTALERRVDGMRGDLRQANIRYVAADVENGDEIAL  176
             PM LGLDL GGVHFL+++DM+ AI + L    + +++ LR+ ++RY +   + G+ I L
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLP-QLGNVIQL  180

Query  177  RFPDAAARDAALKSMAGNYPELKFSTDERNGQPFLTAKFTDVGATAERKAAVDQNITTLR  236
             F D A R+ A   +   + ++ ++  E NG P L   +T    +  R  ++ QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  237  NRVNELGVAEPLIQQQGDDRIVVELPGIQDTVRAKEIIGATATLEFRLVSGTPTDWVDAE  296
            NRVNELGVAEPL+Q+QG +RIVVELPG+QDT  AK I+G TA LEFRL +G         
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP--------  292

Query  297  QSGRVPPDARLYHEKDGRPVLLKRQVIVTGDRITGASSGFDQRSGSPAVFVNLDGQGARR  356
            + ++   +   ++E +  +  + R +I+TGD++T+A ++FD++ G P V +NLDG+G+  
Sbjct  293  DDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGEL  351

Query  357  MADITGQNIGKQMGVVFIEHRTET----KIVDGK----PVKDKKVIQQVINVATIQDQLA  408
            M+  T  N+G+ M+V+FIE+R  T    ++V+G     PV+  K  +++I++ATIQ  L+
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  409  NRFQITGLDSPEEardlalllragalraPMDIVEERTVGPSLGAQNIQSGVNASILGFAL  468
            ++F+ITGL++  E+ +LALLLRAG+L APM + EERT+GPSLGA+NI  GV+AS+ G  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  469  VAVFMLIYYRVFGVTAIVALGVNLILIVAVLSMLQATLTLPGIAGMVLTLGIAVDANVLI  528
            V++F++  YR FG+ A VAL+ N+++++A++S+L ATLTLPGIAG+VLT+G+AVDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  529  NERIREELRNGLTPHAAIKAGYERAFATIIDSHVTTLLAAIVLFALGAGAVKGFAVTLTI  588
              RIREE+ NG+T + AI  G++RA+++I+D+++TTLL + +LFA+G+G+VKGFAVT+++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  589  GILASLFTAIMVTRALVNLIYGRR  612
            GI++S+FTAIMVTRA+VNLIYG R
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGR  615

375) TK90_1303 in NC_013889


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  411 bits (1547),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 279/631 (45%), Positives = 446/631 (71%), Gaps = 22/631 (3%)

Query  1    MRNSYPAWLYALIVVVILGAGLYAAPNLFPEDPSVQIGNPTTG-EIDQNIRELMGTILGA  59
            M N YP W Y LI+ V++ + +Y+APNL+P+D+++QI+ ++T+ ++ Q   +  +  L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   QGVTPHTVEEQDDGQI-LLRFETTDEQSTAAEILRNALDDNHTVALNMAPATPRWLRAIN  118
             G+   +    ++G+  LLR+   ++Q  A +++R+AL+D+  VALN+A +TP WLR + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  GQPMALGLDLRGGVHFLMEVDLDAVIGTAMERYSNELRGRLREERISFDTVERGSRDLTV  178
            + PM LGLDL GGVHFL+EVD+D  I++ +  Y  E+++ LR E++ + ++ + +  + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  MFESEADREAAEGWLQRQYRE-ELVWESRGSGDTSRLVATLDDDHLTELRRQALQQNIST  237
             F  +A+RE A + +++ + + E+   +    + + L  +L    L+E+R  +++QN++T
Sbjct  181  GFGDDAEREQARALVRKTFTDFEIT--PAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  238  LRSRVDELGVAEPIIAQQGENRIVVQLPGVQDTARAKEVLGATATLEFRLVSESGDAQEA  297
            +R+RV+ELGVAEP++ +QG NRIVV+LPGVQDTA AK +LG TA LEFRL + ++D++ +
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  298  DETGRAPSGTRLYYERDGTPVLLQRQVMLTGDYITDASSGIAQDTGGPAVFINLDGQGAR  357
             E      G R        +  ++R +++TGD +TDA +++ ++ G P V INLDG+G+ 
Sbjct  299  TEMFEFREGGR-------PAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDGHGGE  350

Query  358  IFSRVTSDNVGRLMATVFIETSTETV-------EEDGEQVMRTSRSEE-VINVARINEPL  409
            + SR T  NVGR MA +FIE    T          + +  ++T + +  +I++A I+ PL
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  410  GRRFQISGLDSSREarnlalllragalaaPMSIVEERTVGPSLGQENIDRGMQSVVIGFI  469
            G +F+I+GL++  E+ +LALLLRAG+LAAPM + EERT+GPSLG +NI +G+++ + G +
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  470  AVMIFMVLYYRVFGVIANVALALNLIFIVSVLSMLQATLTLPGIAGIVLTVGMAVDANVL  529
             V +F++  YR FG+IA VALA+N++ +++++S+L ATLTLPGIAGIVLT+GMAVDANVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  530  ILERIREELRNGLSPQAAIASGYDRAFTTIADANVTTLIAALVLFLFGTGPIKGFAITLS  589
            I+ RIREE+ NG++ Q AI+ G+DRA+T+I DAN+TTL+ + +LF  GTGP+KGFA+T+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  590  IGIIASMFTAIMVTRAIVNLTYGRQRRLNRL  620
            +GI++SMFTAIMVTRA+VNL YG  R +++L
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYG-GRDFKKL  620

376) secD in NC_004459


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  411 bits (1546),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 308/632 (49%), Positives = 462/632 (74%), Gaps = 24/632 (3%)

Query  1    MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTNALNK  59
            MLN+YPLWKY++++  + ++ +Y+ PN+Y +D+AIQ++GA  A  V  + +D  ++AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   ENLSHKSIALENGSI--LVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLESIG  117
              ++ K+ +L + +   L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKIRYRSIRPVGSDAIE  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E+  ++ LR  K+RYRS+  +G + I+
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  178  VLLRDGEELSQAKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITIL  237
            + + D+ E  QA+  + K   D  +  ++ +G   L  ++T ++L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAG  291

Query  298  sgrapaGSEIKQDRN-GRP-VVLKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNK  355
            ++ + + +E+ + R+ GRP   + + +I++G  +TDA +S DE GRPQVNI+LD++GG+ 
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  356  MAAFSKKNIGKLMATVFAE------YKDSGRKSPEGKV---ILTKHEEVINQATIQSALG  406
            M+  ++ N+G+ MA +F E      Y     ++ E  V    +  +  +I+ ATIQS+LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  407  RNFRITGIDSAAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVA  466
             +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  467  VMLFTLLYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVL  526
            V LF +  YR FGLIA VAL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  527  IFerireelregrNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLS  586
            IF RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  587  IGILTSMFTAIIGTRCIVNLLYGGKRINKLSI  618
            +GI+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

377) secD in NC_005139


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  411 bits (1546),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 308/632 (49%), Positives = 462/632 (74%), Gaps = 24/632 (3%)

Query  1    MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTNALNK  59
            MLN+YPLWKY++++  + ++ +Y+ PN+Y +D+AIQ++GA  A  V  + +D  ++AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   ENLSHKSIALENGSI--LVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLESIG  117
              ++ K+ +L + +   L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKIRYRSIRPVGSDAIE  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E+  ++ LR  K+RYRS+  +G + I+
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  178  VLLRDGEELSQAKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITIL  237
            + + D+ E  QA+  + K   D  +  ++ +G   L  ++T ++L EIR+Y++ QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaa  297
            RNRVNELGVAEPLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAG  291

Query  298  sgrapaGSEIKQDRN-GRP-VVLKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNK  355
            ++ + + +E+ + R+ GRP   + + +I++G  +TDA +S DE GRPQVNI+LD++GG+ 
Sbjct  292  PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  356  MAAFSKKNIGKLMATVFAE------YKDSGRKSPEGKV---ILTKHEEVINQATIQSALG  406
            M+  ++ N+G+ MA +F E      Y     ++ E  V    +  +  +I+ ATIQS+LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  407  RNFRITGIDSAAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVA  466
             +FRITG+++ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  467  VMLFTLLYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVL  526
            V LF +  YR FGLIA VAL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  527  IFerireelregrNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLS  586
            IF RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  587  IGILTSMFTAIIGTRCIVNLLYGGKRINKLSI  618
            +GI+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

378) secD in NC_014228


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  410 bits (1541),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 288/610 (48%), Positives = 435/610 (72%), Gaps = 33/610 (5%)

Query  15   PNLYGEDPAVQITGAR-GIGASEKTLDQVRNVLDKDQIKSKSIALENGAI--LARFNSSD  71
            PNLY +D+A+QI+GA  ++  ++  +D+  + L    I  K+ +L + +   L R++  +
Sbjct  26   PNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKGGLLRLSKQE  85

Query  72   VQLRAREALVSALGEQYVVALNLAPATPAWLSKVGAEPMKLGLDLRGGVHFLMEVDMETA  131
             QL A++ +  ALG++YVVALNLA +TP WL +VGA PMKLGLDL GGVHFL+EVDM+ A
Sbjct  86   DQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKA  145

Query  132  LG---KLQEQNIDSLRVELRDQGIAYSTIRKIDNYGVEVRFRDSDARSKAENYLEPRHRD  188
            ++   K+ E ++ +L   LR + + Y ++ +++N  +++ F D   R +A   +     D
Sbjct  146  IDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAEREQARALVRKTFTD  201

Query  189  LVFSAGANN---TLKAVMSDERLREARSYAVQQNITILRNRVNQLGVAEPLVQRQGADRI  245
            + ++++  N    L+  ++  +L E R Y+++QN+T +RNRVN+LGVAEPLVQRQGA+RI
Sbjct  202  FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRI  261

Query  246  VVELPGIQDTARAKEILGATATLEFRLVNTNIDQNAALAGRIPADSELQYTRDGNPAVLY  305
            VVELPG+QDTA AK ILG TA LEFRL     D +++          +++  +G PA   
Sbjct  262  VVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-------TEMFEFREGGRPAAAV  314

Query  306  KR-VILTGDHITDSTSSTDENGYPQVNISLDSAGGTAMSNFTKDNLQKPMATLFVE----  360
             R +I+TGD++TD+ +S DE+G PQVNI+LD+ GG  MS  T+ N+ ++MA +F+E    
Sbjct  315  ERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPT  374

Query  361  --YK----DSGKKDANGRSLLVKKEEVINIATIQSRLGNNFRITGISNPAEARQLSLLLR  414
              Y     ++  KD   +++   K  +I++ATIQS LG++FRITG++  +E+ +L+LLLR
Sbjct  375  TTYTRQMVNGVEKDVPVQTFKEDKK-IISLATIQSPLGSQFRITGLNGQGESSELALLLR  433

Query  415  AGALIAPIQIVEERTIGPTLGLQNIEQGLEACLWGLVASILFMVIYYRKFGLIASSALLA  474
            AG+L AP+ + EERTIGP+LG +NI +G++A LWG++   LF++  YR FGLIA+ AL  
Sbjct  434  AGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIATVALAF  493

Query  475  NLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTIQQAIHEG  534
            N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ NG T+Q+AI EG
Sbjct  494  NMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAISEG  552

Query  535  YKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAIVNLLY  594
            +  A+++I+DANLTTL+ + IL+A+GTG++KGFA+T S+G+ TSMFTAI+ TRA+VNL+Y
Sbjct  553  FDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIY  612

Query  595  GGKRINKLSI  604
            GG+ ++KL I
Sbjct  613  GGRDFKKLWI  622

379) A79E_3925 in NC_018522


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  410 bits (1541),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 294/617 (48%), Positives = 439/617 (72%), Gaps = 35/617 (5%)

Query  13   GLIYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALEEGAI--LA  69
            G+IY+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L E +   L 
Sbjct  20   GFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKGGLL  79

Query  70   RFDTTDTQLRAREALLNVLGDKYVVALNLAPATPRWLAALYAEPMKLGLDLRGGVHFLME  129
            R+   + QL A++ + + LGD YVVALNLA +TP WL  + A PMKLGLDL GGVHFL+E
Sbjct  80   RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLE  139

Query  130  VDMDTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNYGLSIVFRDSAARDQAISYL  186
            VDMD A++   K+ E ++ +L   LR   + Y ++ + +N  + + F D A R+QA + +
Sbjct  140  VDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAEREQARALV  195

Query  187  SPRHRDLVISS---QGDNRLKAVMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQR  243
                 D+ I++   +G   L+  +T  +L E REY+++QN+  +RNRVN+LGVAEPLVQR
Sbjct  196  RKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQR  255

Query  244  QGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREG  303
            QGA+RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +E+ + REG
Sbjct  256  QGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMFEFREG  307

Query  304  -QPVVLYKR-VILTGDHITDSTSSMDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATL  361
             +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG++MS  T+ N+G++MA +
Sbjct  308  GRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVI  367

Query  362  FVE------YK----DSGKKDANGRAILAKEEEVINIANIQSRLGNSFRITGISNPNEAR  411
            F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG++   E+ 
Sbjct  368  FIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNGQGESS  426

Query  412  QLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMILFYKKFGLI  471
            +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ +Y+ FGLI
Sbjct  427  ELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLI  486

Query  472  ATSALIANLILIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTV  531
            AT AL  N+++++++MSL+ GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++NG TV
Sbjct  487  ATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTV  545

Query  532  QQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTR  591
            Q+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMFTAI+ TR
Sbjct  546  QRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTR  605

Query  592  AIVNLLYGGKRVKKLSI  608
            A+VNL+YGG+  KKL I
Sbjct  606  AMVNLIYGGRDFKKLWI  622

380) VEA_004365 in NC_013456


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  409 bits (1539),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 297/615 (49%), Positives = 440/615 (72%), Gaps = 22/615 (3%)

Query  6    IITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTTALDKEQLSHKSIALENGSI-  63
            ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  + AL    ++ K+ +L + +  
Sbjct  17   LVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKG  76

Query  64   -LVRFNDTDTQISARDVISEALGKDTIVALNLAPSTPDWLEAIGASPLKLGLDLRGGVHF  122
             L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL  +GA+P+KLGLDL GGVHF
Sbjct  77   GLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHF  136

Query  123  LMEVDMDAAMEKLVGQQEEAFRSELREAKIRYRAIRPSGKEAVEVLLRNEEQLAEAKAML  182
            L+EVDMD A++  +   E   ++ LR  K+RYR++   G + +++ + ++ +  +A+A++
Sbjct  137  LLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQLGFGDDAEREQARALV  195

Query  183  EKNHPDMLFVESDSNGRYALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQR  242
             K   D  +  ++ NG   L  ++T  +L EIR+Y++ QN+T +RNRVNELGVAEPLVQR
Sbjct  196  RKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQR  255

Query  243  QGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDG  302
            QGA+RIVVELPGVQDTA AK ILG TA LEFR       L+A++++   +   +    +G
Sbjct  256  QGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPDDSKGTTEMFEFREGG  308

Query  303  RPVV-LKKRVILGGQSITDASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVF  361
            RP   + + +I+ G+ +TDA +S DE GRPQVNI+LD++GG+ MS  ++ N+G+ MA +F
Sbjct  309  RPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIF  368

Query  362  AE------YKDSGRRTPEGKVILDKHEE---VINQATIQSALGRNFRITGIDSAAEahnl  412
             E      Y        E  V ++   E   +I+ ATIQS+LG +FRITG+++ +E+ +L
Sbjct  369  IEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSEL  428

Query  413  alllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRGFGLIAN  472
            ALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V LF +  YR FGLIA 
Sbjct  429  ALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIAT  488

Query  473  IALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRSPQQ  532
            +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF RIREE+ +G + Q+
Sbjct  489  VALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQR  547

Query  533  AIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLSIGILTSMFTAIIGTRCI  592
            AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S+GI+TSMFTAI+ TR +
Sbjct  548  AISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAM  607

Query  593  VNLIYGGKRVDKLSI  607
            VNLIYGG+   KL I
Sbjct  608  VNLIYGGRDFKKLWI  622

381) SerAS12_0981 in NC_015566


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  409 bits (1540),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 296/623 (48%), Positives = 450/623 (73%), Gaps = 31/623 (4%)

Query  1    MLIVVIIVGLLYALPNLYGEDPAVQITGAR-GVAASETTLDQVRTVLEKDNIASKSIALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  ++  +++ +D+    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFKDPDVQLRAREALMAELGDKFVVALNLAPATPAWLAMLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +   LGD +VVALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQ  177
            GGVHFL+EVDMD A++       + +++ LR   + Y S+ +L+N  +++ F DDA R+Q
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQLGFGDDAEREQ  190

Query  178  AISYITPRQRDLVLSA---NGTNTLKASLTDARLSEAREYAVQQNITILRNRVNQLGVAE  234
            A + +     D+ +++   NG   L+ +LT A+L+E REY+++QN+T +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVntnadataaanGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        +A+ +   G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMF  302

Query  295  NTREG-QPVVLYKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAGGTSMSNFTKDNIGK  352
            + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG  MS  T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSRLGNSFRITGIG  401
            +MA +F+E      Y     ++  KD   +++  K++  +I++A IQS LG+ FRITG+ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRITGLN  420

Query  402  NPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWY  461
               E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   +F++  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  462  RKFGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL  521
            R FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  522  KNGRSIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVATSMFT  581
             NG ++Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TSMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  582  AIVGTRAIVNLLYGGKRINKLSI  604
            AI+ TRA+VNL+YGG+ ++KL I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

382) SerAS13_0981 in NC_017573


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  409 bits (1540),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 296/623 (48%), Positives = 450/623 (73%), Gaps = 31/623 (4%)

Query  1    MLIVVIIVGLLYALPNLYGEDPAVQITGAR-GVAASETTLDQVRTVLEKDNIASKSIALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  ++  +++ +D+    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFKDPDVQLRAREALMAELGDKFVVALNLAPATPAWLAMLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +   LGD +VVALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQ  177
            GGVHFL+EVDMD A++       + +++ LR   + Y S+ +L+N  +++ F DDA R+Q
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQLGFGDDAEREQ  190

Query  178  AISYITPRQRDLVLSA---NGTNTLKASLTDARLSEAREYAVQQNITILRNRVNQLGVAE  234
            A + +     D+ +++   NG   L+ +LT A+L+E REY+++QN+T +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVntnadataaanGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        +A+ +   G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMF  302

Query  295  NTREG-QPVVLYKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAGGTSMSNFTKDNIGK  352
            + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG  MS  T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSRLGNSFRITGIG  401
            +MA +F+E      Y     ++  KD   +++  K++  +I++A IQS LG+ FRITG+ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRITGLN  420

Query  402  NPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWY  461
               E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   +F++  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  462  RKFGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL  521
            R FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  522  KNGRSIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVATSMFT  581
             NG ++Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TSMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  582  AIVGTRAIVNLLYGGKRINKLSI  604
            AI+ TRA+VNL+YGG+ ++KL I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

383) SerAS9_0981 in NC_015567


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  409 bits (1540),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 296/623 (48%), Positives = 450/623 (73%), Gaps = 31/623 (4%)

Query  1    MLIVVIIVGLLYALPNLYGEDPAVQITGAR-GVAASETTLDQVRTVLEKDNIASKSIALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  ++  +++ +D+    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFKDPDVQLRAREALMAELGDKFVVALNLAPATPAWLAMLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +   LGD +VVALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQ  177
            GGVHFL+EVDMD A++       + +++ LR   + Y S+ +L+N  +++ F DDA R+Q
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQLGFGDDAEREQ  190

Query  178  AISYITPRQRDLVLSA---NGTNTLKASLTDARLSEAREYAVQQNITILRNRVNQLGVAE  234
            A + +     D+ +++   NG   L+ +LT A+L+E REY+++QN+T +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVntnadataaanGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        +A+ +   G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMF  302

Query  295  NTREG-QPVVLYKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAGGTSMSNFTKDNIGK  352
            + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG  MS  T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSRLGNSFRITGIG  401
            +MA +F+E      Y     ++  KD   +++  K++  +I++A IQS LG+ FRITG+ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRITGLN  420

Query  402  NPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWY  461
               E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   +F++  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  462  RKFGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL  521
            R FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  522  KNGRSIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVATSMFT  581
             NG ++Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TSMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  582  AIVGTRAIVNLLYGGKRINKLSI  604
            AI+ TRA+VNL+YGG+ ++KL I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

384) secD in NC_021659


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  409 bits (1540),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 296/623 (48%), Positives = 450/623 (73%), Gaps = 31/623 (4%)

Query  1    MLIVVIIVGLLYALPNLYGEDPAVQITGAR-GVAASETTLDQVRTVLEKDNIASKSIALE  59
            +++ V++VG++Y+ PNLY +D+A+QI+GA  ++  +++ +D+    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFKDPDVQLRAREALMAELGDKFVVALNLAPATPAWLAMLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +   LGD +VVALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQ  177
            GGVHFL+EVDMD A++       + +++ LR   + Y S+ +L+N  +++ F DDA R+Q
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQLGFGDDAEREQ  190

Query  178  AISYITPRQRDLVLSA---NGTNTLKASLTDARLSEAREYAVQQNITILRNRVNQLGVAE  234
            A + +     D+ +++   NG   L+ +LT A+L+E REY+++QN+T +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVntnadataaanGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL        +A+ +   G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMF  302

Query  295  NTREG-QPVVLYKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAGGTSMSNFTKDNIGK  352
            + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG  MS  T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSRLGNSFRITGIG  401
            +MA +F+E      Y     ++  KD   +++  K++  +I++A IQS LG+ FRITG+ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRITGLN  420

Query  402  NPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWY  461
               E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   +F++  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  462  RKFGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL  521
            R FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  522  KNGRSIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVATSMFT  581
             NG ++Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TSMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  582  AIVGTRAIVNLLYGGKRINKLSI  604
            AI+ TRA+VNL+YGG+ ++KL I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

385) secD in NC_008340


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  409 bits (1539),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 285/625 (46%), Positives = 437/625 (70%), Gaps = 25/625 (4%)

Query  1    MNRYPLWKYLILIVAISLGALYALPNLFGEDPTLQISTAEGD-PPDQETQQSLLRFLEEQ  59
            +N+YPLWKY++++  + +G +Y+ PNL+ +D+++QIS A       Q   +   + L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   GVP----AIGAETREGQYLIRFDSVDHQMDAADLVSAKLGRGYTAAMTLTPRTPAWLRAL  115
            G+P    +++ + + G  L+R+   ++Q+ A D+V   LG +Y  A+ L+  TP WLR +
Sbjct  62   GIPVKASSLAENGKGG--LLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  116  GAEPMYLGLDLRGGVHFLLEVDVNALREQTVERHVNDFRTLLRQGRIRYGQVEPYEDLAV  175
            GA PM LGLDL GGVHFLLEVD++   +  +     + ++LLR+ ++RY  +    ++ +
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-I  178

Query  176  RVSFREAPARDEALRLLQEDFGDLEFDRDEADGNYYLIARITQDDLDEIVQFSVNQNITT  235
            +++F + + R++A  L++  F D+E+   E +G   L   +T   L EI ++S++QN+TT
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  236  LRNRVDELGVAEPVIQRQGAERIVVQLPGVQDPARAKEILGATATLEFRLVDMERYPFTG  295
            +RNRV+ELGVAEP++QRQGA+RIVV+LPGVQD A AK ILG TA LEFRL         +
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GA  290

Query  296  DpeaprlppaaelFQERDGNYVVLQRDVMMTGDRIVHAASGIDQETGGPQVNIRLSGAAG  355
            +P+ ++       F+E +     ++R++++TGD++ +A +++D++ G PQVNI L G +G
Sbjct  291  GPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGG  349

Query  356  RQFNRITREHVGDLMAVVFIERQS------EMV--LVNDEPQREVTEVREVISVANIREP  407
               +R TR +VG  MAV+FIE+++      +MV  + +D P +   E + +IS+A I+ P
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  408  LGASFRITGLDSTQEarnlalllragalaaPIDIVEERTIGPSLGAENVRQGFLAVVIGF  467
            LG+ FRITGL++  E+ +LALLLRAG+LAAP+ + EERTIGPSLGA+N+ +G  A + G 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  468  ALVVVFMAFYYRVFGLVANLALITNLVLIVAVLSLLQATLTLPGIAGIVLTVGMAVDANV  527
             +V +F+   YR FGL+A +AL  N+V+++A++SLL ATLTLPGIAGIVLT+GMAVDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  528  LIFQRIREELHAGSSIQRAIDQGYGKALSTIADANVTTLIAAVVLFVFGTGPVQGFAVTL  587
            LIF RIREE+  G ++QRAI +G+++A ++I DAN+TTL+ + +LF  GTGPV+GFAVT+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  588  SIGLVTSMFTAILGTRAVINLIYGG  612
            S+G+ TSMFTAI+ TRA++NLIYGG
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGG  614

386) C427_4128 in NC_020514


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  409 bits (1539),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 278/611 (46%), Positives = 437/611 (72%), Gaps = 28/611 (4%)

Query  7    LYATPNLYGEDHAVQISAGKNAV-LDAAVVEKVTAELAAANISSKSIVLENDQI--LIRL  63
            +Y++PNLY +D A+QIS++  A+ +  A V++ +  L+ A I+ K+  L ++    L+RL
Sbjct  22   IYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKGGLLRL  81

Query  64   KDSDTQLVAREKIDKALGDNYIVAMNLAPDTPDWLESLGGTPMKLGLDLRGGVHFLMEVD  123
               + QL A++ + KALGD+Y+VA+NLA  TP+WL ++G+TPMKLGLDL GGVHFL+EVD
Sbjct  82   SKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVD  141

Query  124  MKSALSKTLQDMAGDFKTALRDEGIRYRTVKQLDDGVEIYFRDQETLDSAEFFLKNRNRD  183
            M  A+   L+   G+ K+ LR E +RYR++ QL++ +++ F D+   + A  ++++   D
Sbjct  142  MDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGDDAEREQARALVRKTFTD  201

Query  184  LVFV--ERTGLVIFA-NMSDQKLAETRDYAVKQNITIIRNRVTQLGVSDPTVQKQGPDRI  240
            + +   E  G+ ++   ++  KLAE R+Y++KQN+T +RNRV +LGV++P VQ+QG++RI
Sbjct  202  FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRI  261

Query  241  VVQLPGIQDTAKAKEILNATATLEYREVDLEHDVRDAINGRVPAGSELLPYDKGG--PQL  298
            VV+LPG+QDTA AK IL  TA LE+R     +D +++        +E++ +  GG  +  
Sbjct  262  VVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--------TEMFEFREGGRPAAA  313

Query  299  LKKQVIVAGSSIIDANSGVDQYGMPKVSISLDSKGGAKMLNFTKRAVGKPMAVVFIEFKT  358
            + + +I++G  + DA+++ D+ G P+V+I+LD+ GG  M   T+  VG++MAV+FIE + 
Sbjct  314  VERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRP  373

Query  359  TG----------ERDADDKLIFEEERRVISVATINGVFGNQFETTGLDSPQEaydlalll  408
            T           E+D   +  F E++++IS+ATI++ +G+QF  TGL++  E+ +LALLL
Sbjct  374  TTTYTRQMVNGVEKDVPVQ-TFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLL  432

Query  409  ragaliaPIQIIEERTVGPSLGQENIDLGTKAIVYGFIAVLIFMLIYYKKFGFVANIALT  468
            RAG+L AP+ + EERT+GPSLG +NI  G  A + G + V +F++  Y+ FG++A +AL+
Sbjct  433  RAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIATVALA  492

Query  469  LNLVMIIGVMSMFPAAALTLPGMAGIVLTVGMAVDANVLIFERIREEVKDGRSPQQAIHY  528
            +N+VM++++MS++ +A+LTLPG+AGIVLT+GMAVDANVLIF RIREE+ +G + Q+AI  
Sbjct  493  FNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAISE  551

Query  529  GYDSAFSTILDANITTFLVGLILFAVGTGPIKGFSITLMIGIITSMFTAIIVTRVIVNAW  588
            G+D A+++ILDAN+TT+LVG ILFA+GTGP+KGF++T+ +GI+TSMFTAI+VTR +VN  
Sbjct  552  GFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLI  611

Query  589  WGGRRLTKLSI  599
             GGR + KL I
Sbjct  612  YGGRDFKKLWI  622

387) secD in NC_022269


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1537),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 297/615 (49%), Positives = 441/615 (72%), Gaps = 22/615 (3%)

Query  6    IITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTKALDKEHLSHKSIALENGSI-  63
            ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  +KAL    ++ K+ +L + +  
Sbjct  17   LVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKG  76

Query  64   -LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPDWLEAIGASPLKLGLDLRGGVHF  122
             L+R++  + Q++A+D++  ALG D +VALNLA +TP+WL  +GA+P+KLGLDL GGVHF
Sbjct  77   GLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHF  136

Query  123  LMEVDMDAAMEKLVGQQEEAFRSELREAKIRYRAIRPSGTEGVEVLLRNEEQLAEAKATL  182
            L+EVDMD A++  +   E   ++ LR  K+RYR++   G + +++ + ++ +  +A+A +
Sbjct  137  LLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQLGFGDDAEREQARALV  195

Query  183  EKNHPDMNFVDSDSNGRYALIATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQR  242
             K   D ++  ++ NG   L  ++T  +L EIR+Y++ QN+T +RNRVNELGVAEPLVQR
Sbjct  196  RKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQR  255

Query  243  QGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDG  302
            QGA+RIVVELPGVQDTA AK ILG TA LEFR       L+A++++   +   +    +G
Sbjct  256  QGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPDDSKGTTEMFEFREGG  308

Query  303  RPVV-LKKRVILGGQSITDASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVF  361
            RP   + + +I+ G+ +TDA +S DE GRPQVNI+LD++GG+ MS  ++ N+G+ MA +F
Sbjct  309  RPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIF  368

Query  362  AE------YKDSGRRTPEGKVILDKHEE---VINQATIQSALGRNFRITGIDSAAEahnl  412
             E      Y        E  V ++   E   +I+ ATIQS+LG +FRITG+++ +E+ +L
Sbjct  369  IEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSEL  428

Query  413  alllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRGFGLIAN  472
            ALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V LF +  YR FGLIA 
Sbjct  429  ALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIAT  488

Query  473  IALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRSPQQ  532
            +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF RIREE+ +G + Q+
Sbjct  489  VALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQR  547

Query  533  AIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLSIGILTSMFTAIVGTRCI  592
            AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S+GI+TSMFTAI+ TR +
Sbjct  548  AISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAM  607

Query  593  VNLIYGGKRVDKLSI  607
            VNLIYGG+   KL I
Sbjct  608  VNLIYGGRDFKKLWI  622

388) secD in NC_009783


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1537),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 297/615 (49%), Positives = 441/615 (72%), Gaps = 22/615 (3%)

Query  6    IITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTKALDKEHLSHKSIALENGSI-  63
            ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  +KAL    ++ K+ +L + +  
Sbjct  17   LVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKG  76

Query  64   -LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPDWLEAIGASPLKLGLDLRGGVHF  122
             L+R++  + Q++A+D++  ALG D +VALNLA +TP+WL  +GA+P+KLGLDL GGVHF
Sbjct  77   GLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHF  136

Query  123  LMEVDMDAAMEKLVGQQEEAFRSELREAKIRYRAIRPSGTEGVEVLLRNEEQLAEAKATL  182
            L+EVDMD A++  +   E   ++ LR  K+RYR++   G + +++ + ++ +  +A+A +
Sbjct  137  LLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQLGFGDDAEREQARALV  195

Query  183  EKNHPDMNFVDSDSNGRYALIATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQR  242
             K   D ++  ++ NG   L  ++T  +L EIR+Y++ QN+T +RNRVNELGVAEPLVQR
Sbjct  196  RKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQR  255

Query  243  QGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDG  302
            QGA+RIVVELPGVQDTA AK ILG TA LEFR       L+A++++   +   +    +G
Sbjct  256  QGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPDDSKGTTEMFEFREGG  308

Query  303  RPVV-LKKRVILGGQSITDASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVF  361
            RP   + + +I+ G+ +TDA +S DE GRPQVNI+LD++GG+ MS  ++ N+G+ MA +F
Sbjct  309  RPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIF  368

Query  362  AE------YKDSGRRTPEGKVILDKHEE---VINQATIQSALGRNFRITGIDSAAEahnl  412
             E      Y        E  V ++   E   +I+ ATIQS+LG +FRITG+++ +E+ +L
Sbjct  369  IEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSEL  428

Query  413  alllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRGFGLIAN  472
            ALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V LF +  YR FGLIA 
Sbjct  429  ALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIAT  488

Query  473  IALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRSPQQ  532
            +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF RIREE+ +G + Q+
Sbjct  489  VALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQR  547

Query  533  AIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLSIGILTSMFTAIVGTRCI  592
            AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S+GI+TSMFTAI+ TR +
Sbjct  548  AISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAM  607

Query  593  VNLIYGGKRVDKLSI  607
            VNLIYGG+   KL I
Sbjct  608  VNLIYGGRDFKKLWI  622

389) secD in NC_010634


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1536),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 294/626 (47%), Positives = 450/626 (72%), Gaps = 37/626 (5%)

Query  1    MLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEKDNIASKSIALE  59
            +++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKA  174
            GGVHFL+EVDMD A++   K+ E  + +L   LR  ++ Y ++ +L+N  +++ F DD  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLG  231
            R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDS  291
            VAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+         G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTT  299

Query  292  EVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGATMSNFTKDN  349
            E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSRLGNSFRIT  398
            +G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS LG+ FRIT
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRIT  417

Query  399  GIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMV  458
            G++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+    LF++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  459  VYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIK  518
              YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  519  EEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVVTS  578
            EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TS
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  579  MFTAIVGTRAIVNLLYGGKRINKLSI  604
            MFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  597  MFTAIMVTRAMVNLIYGGRDFKKLWI  622

390) Glaag_3174 in NC_015497


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1536),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 289/629 (46%), Positives = 458/629 (73%), Gaps = 26/629 (4%)

Query  1    MLNQTPLWKYLVLIFIVGMCALYATPNLYGEDYAVQISAGRNA-SVDESLLNKVTETLSS  59
            MLN+ PLWKY++++ ++ +  +Y++PNLY +D A+QIS++  A  V ++ +++ + +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   ENIEAKNIALDNEQI--LVRLTNSDSQLIARETLQRALGDDYYVAMNLAPDTPAWLEAIG  117
              I  K  +L ++    L+RL++ + QL A++ +++ALGDDY VA+NLA  TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMNSAVNKSFEDMVSDFRSALREEGIRYRTVRQVEGGVEI  177
            ++PMKLGLDL GGVHFL+EVDM+ A++  +    ++ ++ LR E +RYR++ Q+   +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  FFRDQDTLDKAEFFLRNRNRDLVFT--EKNDLKIV-VSMSEQKLAETRDYAVKQNITIIR  234
             F D+   ++A  ++R+   D+ +T  E N++ ++ ++++  KLAE R+Y++KQN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNQLGVAEPSVQKQGVDRIAVQLPGIQDTARAKEILNATATLEFRSVDLDHDVRDAVA  294
            NRVN+LGVAEP VQ+QG +RI V+LPG+QDTA AK IL  TA LEFR     +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  295  GRVPAGSELVLDQQGQPQL-LKKKIILTGNHIIDANSSADEYGIPQVNISLDSKGGSKMS  353
                    + + + G+P   + + +I+TG+++ DA++S DE G PQVNI+LD+ GG  MS
Sbjct  301  -------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  354  QFTKDSIGKPMATVFIEYKSTG----------ERDANDKLIFEAKREVISIATIQARLGS  403
            + T+ ++G++MA +FIE ++T           E+D   +  F   + +IS+ATIQ+ LGS
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQ-TFKEDKKIISLATIQSPLGS  412

Query  404  SFRITGLDSPQEAHNLSLLLRAGALIAPIQIVEERTVGPSLGKENIALGTQAIIWGFVAV  463
             FRITGL++  E+ +L+LLLRAG+L AP+ + EERT+GPSLG +NI+ G +A +WG + V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LIFMLIYYKAFGvvanlaltlnlvMIVGIMSMIPGATLSLPGMAGIVLTVGMAVDANVLI  523
             +F++  Y+ FG++A +AL++N+VM++++MS++ GATL+LPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  FerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMI  583
            F RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+KGF++T+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIATSMFTAIFVTRAVVNAWCGGKPLKKL  612
            GI TSMFTAI VTRA+VN   GG+ +KKL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

391) NT08PM_1100 in NC_017764


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1535),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 292/631 (47%), Positives = 452/631 (72%), Gaps = 28/631 (4%)

Query  1    MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRG--QEANAQIFSEVQTLLN  58
            MLN+YPLWK ++++ V+ +G +YS PNLY +D+A+QISG+    Q ++A++       L 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADV-DRAAKALT  59

Query  59   QNNLETKSIILENGSI--LARFHNTDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSV  116
            +  +  K+  L + +   L R+ + +DQL AKD +   LG++Y VALNLA +TP+WL +V
Sbjct  60   DAGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRKEKYQYTGIKSAENFST  176
            GA PMK GLDL GGV+FL+EVDM  A++ R    ++++++ LRKEK +Y ++    N   
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  LVTLLKPEQLDEVQRFLRKQHHNLEIKSV---SDNTLALTLSEAALNESRESAIEQNLTI  233
            L  +    + ++ + ++RK   ++EI +    +   L ++L+ A L E RE +I QNLT 
Sbjct  180  L-GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRKRVSELGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSA  293
            +R+RV+ELGV+E+++QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL     +  ++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  294  TRGFVPNDSEVKLDRNGRPVVLYKRA-VLGGEHITNASSGLDQQTSRPQVSVTLDSEGGE  352
            T  F        +   GRP     R+ ++ G+++T+A +++D++ +RPQV++ LD++GGE
Sbjct  299  TEMF-------EFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGE  350

Query  353  IMSQATRLNLKKPMATLYVE------YKD---SGKKDENGKAILEKHEEVINVATIQGRF  403
            +MS+ATR N+ ++MA +++E      Y     +G   +     +  +  +I++ATIQ+ +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  404  GSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLL  463
            GSQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIGPSLGA+N+ +G++AS+WG+L
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  464  AVIIFMTLYYRKFglianialianivlvvglMSLLPGATLSMPGIAGIVLSVGMSIDANV  523
             V +F+   YR FGLIA +AL  N+V++++LMSLL GATL++PGIAGIVL++GM++DANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  524  LIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLTTILTSVILYAVGAGPVKGFAITL  583
            LIF RI+EEI NG  +Q+AI EG+  A+T+I+DANLTT+L + IL+A+G+GPVKGFA+T+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  584  ALGVGISMFTAIVGTRAIVNFLYGGKRINKL  614
            +LG+  SMFTAI+ TRA+VN++YGG+ ++KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

392) secD in NC_017027


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1535),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 292/631 (47%), Positives = 452/631 (72%), Gaps = 28/631 (4%)

Query  1    MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRG--QEANAQIFSEVQTLLN  58
            MLN+YPLWK ++++ V+ +G +YS PNLY +D+A+QISG+    Q ++A++       L 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADV-DRAAKALT  59

Query  59   QNNLETKSIILENGSI--LARFHNTDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSV  116
            +  +  K+  L + +   L R+ + +DQL AKD +   LG++Y VALNLA +TP+WL +V
Sbjct  60   DAGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRKEKYQYTGIKSAENFST  176
            GA PMK GLDL GGV+FL+EVDM  A++ R    ++++++ LRKEK +Y ++    N   
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  LVTLLKPEQLDEVQRFLRKQHHNLEIKSV---SDNTLALTLSEAALNESRESAIEQNLTI  233
            L  +    + ++ + ++RK   ++EI +    +   L ++L+ A L E RE +I QNLT 
Sbjct  180  L-GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRKRVSELGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSA  293
            +R+RV+ELGV+E+++QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL     +  ++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  294  TRGFVPNDSEVKLDRNGRPVVLYKRA-VLGGEHITNASSGLDQQTSRPQVSVTLDSEGGE  352
            T  F        +   GRP     R+ ++ G+++T+A +++D++ +RPQV++ LD++GGE
Sbjct  299  TEMF-------EFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGE  350

Query  353  IMSQATRLNLKKPMATLYVE------YKD---SGKKDENGKAILEKHEEVINVATIQGRF  403
            +MS+ATR N+ ++MA +++E      Y     +G   +     +  +  +I++ATIQ+ +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  404  GSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLL  463
            GSQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIGPSLGA+N+ +G++AS+WG+L
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  464  AVIIFMTLYYRKFglianialianivlvvglMSLLPGATLSMPGIAGIVLSVGMSIDANV  523
             V +F+   YR FGLIA +AL  N+V++++LMSLL GATL++PGIAGIVL++GM++DANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  524  LIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLTTILTSVILYAVGAGPVKGFAITL  583
            LIF RI+EEI NG  +Q+AI EG+  A+T+I+DANLTT+L + IL+A+G+GPVKGFA+T+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  584  ALGVGISMFTAIVGTRAIVNFLYGGKRINKL  614
            +LG+  SMFTAI+ TRA+VN++YGG+ ++KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

393) secD in NC_002663


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1535),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 292/631 (47%), Positives = 452/631 (72%), Gaps = 28/631 (4%)

Query  1    MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRG--QEANAQIFSEVQTLLN  58
            MLN+YPLWK ++++ V+ +G +YS PNLY +D+A+QISG+    Q ++A++       L 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADV-DRAAKALT  59

Query  59   QNNLETKSIILENGSI--LARFHNTDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSV  116
            +  +  K+  L + +   L R+ + +DQL AKD +   LG++Y VALNLA +TP+WL +V
Sbjct  60   DAGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRKEKYQYTGIKSAENFST  176
            GA PMK GLDL GGV+FL+EVDM  A++ R    ++++++ LRKEK +Y ++    N   
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  LVTLLKPEQLDEVQRFLRKQHHNLEIKSV---SDNTLALTLSEAALNESRESAIEQNLTI  233
            L  +    + ++ + ++RK   ++EI +    +   L ++L+ A L E RE +I QNLT 
Sbjct  180  L-GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRKRVSELGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSA  293
            +R+RV+ELGV+E+++QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL     +  ++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  294  TRGFVPNDSEVKLDRNGRPVVLYKRA-VLGGEHITNASSGLDQQTSRPQVSVTLDSEGGE  352
            T  F        +   GRP     R+ ++ G+++T+A +++D++ +RPQV++ LD++GGE
Sbjct  299  TEMF-------EFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGE  350

Query  353  IMSQATRLNLKKPMATLYVE------YKD---SGKKDENGKAILEKHEEVINVATIQGRF  403
            +MS+ATR N+ ++MA +++E      Y     +G   +     +  +  +I++ATIQ+ +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  404  GSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLL  463
            GSQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIGPSLGA+N+ +G++AS+WG+L
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  464  AVIIFMTLYYRKFglianialianivlvvglMSLLPGATLSMPGIAGIVLSVGMSIDANV  523
             V +F+   YR FGLIA +AL  N+V++++LMSLL GATL++PGIAGIVL++GM++DANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  524  LIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLTTILTSVILYAVGAGPVKGFAITL  583
            LIF RI+EEI NG  +Q+AI EG+  A+T+I+DANLTT+L + IL+A+G+GPVKGFA+T+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  584  ALGVGISMFTAIVGTRAIVNFLYGGKRINKL  614
            +LG+  SMFTAI+ TRA+VN++YGG+ ++KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

394) YPD4_2796 in NC_017154


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1535),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 294/626 (47%), Positives = 450/626 (72%), Gaps = 37/626 (5%)

Query  1    MLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEKDNIASKSIALE  59
            +++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKA  174
            GGVHFL+EVDMD A++   K+ E  + +L   LR  ++ Y ++ +L+N  +++ F DD  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLG  231
            R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDS  291
            VAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+         G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTT  299

Query  292  EVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGSTMSNFTKDN  349
            E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSRLGNSFRIT  398
            +G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS LG+ FRIT
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRIT  417

Query  399  GIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMV  458
            G++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+    LF++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  459  VYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIK  518
              YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  519  EEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVVTS  578
            EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TS
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  579  MFTAIVGTRAIVNLLYGGKRINKLSI  604
            MFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  597  MFTAIMVTRAMVNLIYGGRDFKKLWI  622

395) YPD8_2787 in NC_017160


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1535),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 294/626 (47%), Positives = 450/626 (72%), Gaps = 37/626 (5%)

Query  1    MLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEKDNIASKSIALE  59
            +++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKA  174
            GGVHFL+EVDMD A++   K+ E  + +L   LR  ++ Y ++ +L+N  +++ F DD  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLG  231
            R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDS  291
            VAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+         G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTT  299

Query  292  EVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGSTMSNFTKDN  349
            E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSRLGNSFRIT  398
            +G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS LG+ FRIT
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRIT  417

Query  399  GIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMV  458
            G++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+    LF++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  459  VYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIK  518
              YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  519  EEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVVTS  578
            EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TS
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  579  MFTAIVGTRAIVNLLYGGKRINKLSI  604
            MFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  597  MFTAIMVTRAMVNLIYGGRDFKKLWI  622

396) YPZ3_2807 in NC_014029


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1535),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 294/626 (47%), Positives = 450/626 (72%), Gaps = 37/626 (5%)

Query  1    MLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEKDNIASKSIALE  59
            +++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKA  174
            GGVHFL+EVDMD A++   K+ E  + +L   LR  ++ Y ++ +L+N  +++ F DD  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLG  231
            R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDS  291
            VAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+         G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTT  299

Query  292  EVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGSTMSNFTKDN  349
            E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSRLGNSFRIT  398
            +G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS LG+ FRIT
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRIT  417

Query  399  GIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMV  458
            G++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+    LF++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  459  VYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIK  518
              YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  519  EEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVVTS  578
            EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TS
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  579  MFTAIVGTRAIVNLLYGGKRINKLSI  604
            MFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  597  MFTAIMVTRAMVNLIYGGRDFKKLWI  622

397) secD in NC_010465


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  408 bits (1535),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 294/626 (47%), Positives = 450/626 (72%), Gaps = 37/626 (5%)

Query  1    MLIVVIFVGLLYALPNLYGEDPAVQITGAR-GIAASETTLVQVRDVLEKDNIASKSIALE  59
            +++ V+ VG++Y+ PNLY +D+A+QI+GA  ++  +++ + +    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLR  117
            + +   L R+   + QL A++ +  ALGD YV+ALNLA +TP+WL ++GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKA  174
            GGVHFL+EVDMD A++   K+ E  + +L   LR  ++ Y ++ +L+N  +++ F DD  
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  175  RNDAISYLSSRHRDLVFSS---NGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLG  231
            R++A + +     D+ +++   NG   L+  ++  +L E REY+++QN+T +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDS  291
            VAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+         G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTT  299

Query  292  EVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGSTMSNFTKDN  349
            E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQSRLGNSFRIT  398
            +G++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQS LG+ FRIT
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRIT  417

Query  399  GIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMV  458
            G++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NI++G++A LWG+    LF++
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  459  VYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIK  518
              YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  519  EEYRNGRTIQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVVTS  578
            EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TS
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  579  MFTAIVGTRAIVNLLYGGKRINKLSI  604
            MFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  597  MFTAIMVTRAMVNLIYGGRDFKKLWI  622

398) secD in NC_012912


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  407 bits (1531),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 300/622 (49%), Positives = 451/622 (73%), Gaps = 29/622 (4%)

Query  1    MLIATIVVGLLYALPNLYGEDPAIQVTGARGT-AASESTLVQIQNVLKEQNIASKSIALE  59
            +++A +VVG++Y+ PNLY +D+AIQ++GA  +   +++ + +  + L +  I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSTPDIQLHAREVLLNALGEKYVVALNLAPATPTWLRVLGAEPMKLGLDLR  117
            + +   L R+S  + QL A++V+ +ALG+ YVVALNLA +TP WLR +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALGKLQEQTMDSLRSELREKGIQYASVRKSDNYGVEILFRDSQPRDN  177
            GGVHFL+EVDMD A++       + +++ LR   ++Y S+ + +N  +++ F D   R++
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  AVNYLTPRHRDLVISSS---GNDTLRAVMSDVRLREAREYAVQQNINILRNRVNQLGVAE  234
            A   +     D+ I+++   G   LR  ++  +L E REY+++QN+  +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDPVAMSNGRVPGDTEVM  294
            PLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  +  D+         G TE+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS--------KGTTEMF  302

Query  295  NMRDGG-PIALFKR-VILTGDHITDSTSGNDEYNRPQVNISLDSAGGNLMLNFTKGNVGK  352
            + R+GG P A   R +I+TGD++TD+ ++ DE  RPQVNI+LD+ GG+LM   T++NVG+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRAILEKQEEVINVATIQSPLGNSFRITGINN  402
            +MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQSPLG+ FRITG+N 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  403  PNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYK  462
              E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A L G+    LF++ +Y+
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  463  KFGMIATSAlllnlvlvvgvmsllPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELS  522
             FG+IAT AL +N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  523  NGRSVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTA  582
            NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++G+ TSMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  583  IVGTRAIVNLLYGGKRIKKLSI  604
            I+ TRA+VNL+YGG+ +KKL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

399) secD in NC_008228


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  407 bits (1533),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 290/629 (47%), Positives = 457/629 (73%), Gaps = 26/629 (4%)

Query  1    MLNQTPLWKYLVLIFIVGMCALYATPNLYGEDYAVQISAGRNA-SVDESLLSKVTETLSS  59
            MLN+ PLWKY++++ ++ +  +Y++PNLY +D A+QIS++  A  V ++ + + + +L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   ENIETKNIALDNEQI--LVRLTNSDSQLIARETLQRALGDDYYVAMNLAPDTPAWLEAIG  117
              I  K  +L ++    L+RL++ + QL A++ +++ALGDDY VA+NLA  TP WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GAPMKLGLDLRGGVHFLMEVDMNSAVNKSFEDMVSDFRSALREEGIRYRTVRQVEGGVEI  177
            ++PMKLGLDL GGVHFL+EVDM+ A++  +    ++ ++ LR E +RYR++ Q+   +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  FFRDQDTLDKAEFFLRNRNRDLVFT--EKNDLKIV-VSMSEQKLAETRDYAVKQNITIIR  234
             F D+   ++A  ++R+   D+ +T  E N++ ++ ++++  KLAE R+Y++KQN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNQLGVAEPSVQKQGVDRIAVQLPGIQDTARAKEILNATATLEFRSVDLDHDVRDAVA  294
            NRVN+LGVAEP VQ+QG +RI V+LPG+QDTA AK IL  TA LEFR     +D +++  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  295  GRVPAGSELVLDQQGQPQL-LKKKIILTGNHIIDANSSADEYGIPQVNISLDSKGGSKMS  353
                    + + + G+P   + + +I+TG+++ DA++S DE G PQVNI+LD+ GG  MS
Sbjct  301  -------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  354  QFTKDSIGKPMATVFIEYKSTG----------ERDANDKLIFEAKREVISIATIQARLGS  403
            + T+ ++G++MA +FIE ++T           E+D   +  F   + +IS+ATIQ+ LGS
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQ-TFKEDKKIISLATIQSPLGS  412

Query  404  SFRITGLDSPQEAHNLSLLLRAGALIAPIQIVEERTVGPSLGKENIALGTQAIIWGFVAV  463
             FRITGL++  E+ +L+LLLRAG+L AP+ + EERT+GPSLG +NI+ G +A +WG + V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  464  LIFMLIYYKAFGlvanlaltlnlvMIVGIMSMIPGATLSLPGMAGIVLTVGMAVDANVLI  523
             +F++  Y+ FGL+A +AL++N+VM++++MS++ GATL+LPG+AGIVLT+GMAVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  524  FerireelregrSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMI  583
            F RIREE+ +G + Q+AI +G+D A+++ILDAN+TT++ G ILFA+GTGP+KGF++T+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  584  GIATSMFTAIFVTRAVVNAWCGGKPLKKL  612
            GI TSMFTAI VTRA+VN   GG+ +KKL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

400) secD in NC_013892


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  407 bits (1532),  Expect = 8e-115, Method: Compositional matrix adjust.
 Identities = 289/610 (48%), Positives = 432/610 (71%), Gaps = 33/610 (5%)

Query  15   PNLYGEDPAVQITGAR-GIAASEKTLDQVRNVLEKEQIKSKSIALENGAI--LARFNNSD  71
            PNLY +D+A+QI+GA  ++  ++  +D+  + L    I  K+ +L + +   L R+++ +
Sbjct  26   PNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKGGLLRLSKQE  85

Query  72   VQLRAREALVSALGEQYVVALNLAPATPLWLSKVGAEPMKLGLDLRGGVHFLMEVDMETA  131
             QL A++ +  ALG++YVVALNLA +TP WL +VGA PMKLGLDL GGVHFL+EVDM+ A
Sbjct  86   DQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKA  145

Query  132  LS---KLQEQNIDSLRSELRDQGILYSSVRKLDNYGVEVRFRDNDARSKAESYLEPRHRD  188
            +    K+ E ++ +L   LR + + Y S+ +L+N  +++ F D+  R +A + +     D
Sbjct  146  IDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAEREQARALVRKTFTD  201

Query  189  LVFSTG---ANSTLKVVMSDDRLREARTYAVQQNITILRNRVNQLGVAEPLVQRQGADRI  245
            + ++ +   + + L++ ++  +L E R Y+++QN+T +RNRVN+LGVAEPLVQRQGA+RI
Sbjct  202  FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRI  261

Query  246  VVELPGIQDTARAKEILGATATLEFRLVNSNVDQSAAVSGRIPGDSELKYTRDSNPVVLY  305
            VVELPG+QDTA AK ILG TA LEFRL  +  D  ++          + +  ++ P    
Sbjct  262  VVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE-------MFEFREGGRPAAAV  314

Query  306  KR-VILTGDHITDSTSSTDEYGNPQVNISLDGAGGSAMSNFTKDNLQKPMATLFVE----  360
             R +I+TGD++TD+ +S DE G PQVNI+LDG GG  MS  T+ N+ ++MA +F+E    
Sbjct  315  ERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPT  374

Query  361  --YK----DSGKKDANGRSVLVKQEEVINIATIQSRLGNSFRITGIGNLNEarqlalllr  414
              Y     ++  KD   ++ +  +  +I++ATIQS LG+ FRITG+    E+ +LALLLR
Sbjct  375  TTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR  433

Query  415  agaliaPIQIVEERTIGPTLGLQNIKQGLEACLWGLISSILFMVIYYRKFGLIASSALLA  474
            AG+L AP+ + EERTIGP+LG +NI +G++A LWG++   LF++  YR FGLIA+ AL  
Sbjct  434  AGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIATVALAF  493

Query  475  NLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEG  534
            N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ NG TVQ+AI EG
Sbjct  494  NMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAISEG  552

Query  535  YKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAVVNLLY  594
            +  A+++I+DANLTTL+ + IL+A+GTG++KGFA+T S+G+ TSMFTAI+ TRA+VNL+Y
Sbjct  553  FDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIY  612

Query  595  GGKRINKLSI  604
            GG+ ++KL I
Sbjct  613  GGRDFKKLWI  622

401) secD in NC_013416


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  407 bits (1532),  Expect = 8e-115, Method: Compositional matrix adjust.
 Identities = 279/630 (45%), Positives = 447/630 (71%), Gaps = 26/630 (4%)

Query  1    MLNRYPLWKNLMVIFVVAIGILYALPNLYGEDPAVQISGTRGQ-EANSAVLSDVQSVLKD  59
            MLN+YPLWK ++++ V+ +G++Y+ PNLY +D+A+QISG+    +   A +      L D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLTTKSIVLESGSI--LVRFNNTDTQLLAKDKITEKLGTNYSVALNLAPATPKWLSSIG  117
              +  K+  L   +   L+R+++ + QL AKD +   LG +Y VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRKEKYQYSAIKSIDNFSTG  177
            + PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK +Y ++  ++N    
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VTLTNSEQLSDVQRYLRKQHPNLDVS---VTSENTLSLGLSDSVLNEARESAIEQNLSIL  234
            + + +  +  + +  +RK   +++++   + +   L ++L+ + L E RE +I QNL+ +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRIVNASANLEAAA  294
            R+RV ELGVAE+++QRQGA+RIVVELPGVQDTA AK ILG TA LEFR+  ++ +    +
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD----S  295

Query  295  RGMVPSDSEVKYDRNNRPVVLYKRA-VLGGEHITNASSGVDQNTSLPQVSVTLDSEGGEI  353
            +G   +     +    RP     R+ ++ G+++T+A ++ D++   PQV++ LD++GGE+
Sbjct  296  KG---TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGEL  351

Query  354  MSQTTRLNLKKPMATLYVE------YKD---SGKKDENGKTILQKHEEVINVATIQGRFG  404
            MS++TR N+ ++MA +++E      Y     +G   +     ++ +  +I++ATIQ+ +G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  405  SQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQGLQASFWGLMI  464
            SQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIGPSLGA+N+ +G++AS+WG+++
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VVAFMVIYYRKFgiianialianivllvgliSLLPGATLTMPGIAGIVLAVGMSVDANVL  524
            V  F++  YR FG+IA +AL  N+V+L++L+SLL GATLT+PGIAGIVL++GM+VDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IFERIKEEIRNGRPIQQAINEGYSGAFSSIFDANLTTILTAVALYAVGTGPIKGFAITLS  584
            IF RI+EEI NG  +Q+AI+EG+  A+++I+DANLTT+L +  L+A+GTGP+KGFA+T+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  LGIAISMFTAITGTRAIVNFLYGGKRIDKL  614
            LGI  SMFTAI  TRA+VN++YGG+ + KL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

402) Dsui_3325 in NC_016616


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  406 bits (1526),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 275/633 (44%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPLWKYITVVVALVIGFLYTLPNFFGEAPAVQLSPARATLKTDAQLLSRVEAALQGA  60
            +N+YPLWKY+ ++  LV+GF+Y+ PN++ + +A+Q+S A ++L+     + R   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GISHDGIFLDSNGVKT--RFKDTDTQLKVKDLLEKTFNPNPQDAQYVVALNLLSSSPKWL  118
            GI+  +  L  NG     R+   + QL  KD++ K++       +YVVALNL  ++P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALG-----DDYVVALNLARTTPNWL  116

Query  119  SNLGALPMYLGLDLRGGVHFLLQVDMAGALTKRLDSMSADLRTLLRDKNLRHAGINREGN  178
             N+GA PM LGLDL GGVHFLL+VDM  A+  RL    +++++LLR  ++R  ++ + GN
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  AVVVKFRDADTRTKARIVLEDNQPDLTFVDGQDGSDLKLTASLKPTAVKRIQDFALKQNI  238
             + + F D   R +AR ++     D+ +  ++  +   L  +L P+ +  I+++++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  TTLHNRINELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDILGRTATLEIRMVDDTPGAL  298
            TT++NR+NELGVAEP++Q+QGA+RIVV+LPGVQDTA AK ILG+TA LE+R+  +     
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP----  292

Query  299  EAAMAGQAPFGTELYSERGGSPLLVKKQVVLTGDRLTDAQPGFDGQTHEPAVHLTLDSAG  358
            + + +    F    + E G ++  V + +++TGD++TDA+++FD + + P V++ LD+ G
Sbjct  293  DDSKGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHG  348

Query  359  ARIFKDITRENVGKRMAILLIE------------------------KGKGEVVTAPVIRT  394
            + +    TR NVG+ MA+++IE                        K    +++ + I++
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  395  EIGGGRVQISGKMSTMEANDTALLLRAGSLAAPMDIVEERTIGPSLGADNISKGFHSTLW  454
             +G+ + +I+G  +  E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+KG +++LW
Sbjct  409  PLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFLAIAAFMMCYYLMFGLISTLALAANLMFLVALLSLMQATLTLPGIAAIALTLGMAIDS  514
            G L ++ F+M  Y  FGLI+T+ALA N++ L+AL+SL+ ATLTLPGIA+I LT+GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVLINERVREELRNGASPQAAISAGYERAFGTILDSNVTTLIAGVALLAFGSGPIRGFAV  574
            NVLI  R+REE+ NG + Q AIS G++RA+ +ILD+N+TTL+ G  L+A G+GP++GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSSVVVSRALVNLIYGRR--KKL  605
               LGI+TSMF++++V+RA+VNLIYG R  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

403) secD in NC_016612


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  405 bits (1523),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 289/614 (48%), Positives = 435/614 (71%), Gaps = 35/614 (5%)

Query  12   YALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALEEGAI--LARFD  68
            Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L E +   L R+ 
Sbjct  23   YSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKGGLLRLS  82

Query  69   TTDIQLRAREALMGVLGDKYVVALNLAPATPRWLAALYAEPMKLGLDLRGGVHFLMEVDM  128
              + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL GGVHFL+EVDM
Sbjct  83   KQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVDM  142

Query  129  DTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNYGLSIAFRDSAARDQAISYLSPR  185
            D A++   K+ E ++ +L   LR   + Y ++ + +N  + ++F D A R+QA + +   
Sbjct  143  DKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAEREQARALVRKT  198

Query  186  HRDLVISS---QGSTGLKAVMTDDRLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGA  242
              D+ I++   +G   L+  +T  +L E REY+++QN+  +RNRVN+LGVAEPLVQRQGA
Sbjct  199  FTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGA  258

Query  243  DRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDSAAAAAGRVPGDSEV-KYTREGQP  301
            +RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +E+  +   G+P
Sbjct  259  NRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMFEFREGGRP  310

Query  302  VVLYKR-VILTGDHITDSTSSMDEYNQAQVNISLDSAGGNIMSNFTKDNIGKPMATLFVE  360
                 R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG++MS  T+ N+G++MA +F+E
Sbjct  311  AAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIE  370

Query  361  ------YK----DSGKKDASGRAILAKEEEVINIANIQSRLGNSFRITGISNPTEARQLS  410
                  Y     ++  KD + ++ +  +  +I++A IQS LG+ FRITG++   E+ +L+
Sbjct  371  QRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNGQGESSELA  429

Query  411  LLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATS  470
            LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ +Y+ FGLIAT 
Sbjct  430  LLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIATV  489

Query  471  ALVANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQA  530
            AL  N+V+++++MSL+ GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++NG +VQ+A
Sbjct  490  ALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRA  548

Query  531  IDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIV  590
            I EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMFTAI+ TRA+V
Sbjct  549  ISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMV  608

Query  591  NLLYGGKRVKKLSI  604
            NL+YGG+  KKL I
Sbjct  609  NLIYGGRDFKKLWI  622

404) A225_1236 in NC_018106


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  404 bits (1521),  Expect = 6e-114, Method: Compositional matrix adjust.
 Identities = 289/614 (48%), Positives = 434/614 (71%), Gaps = 35/614 (5%)

Query  12   YALPNLYGEDPAVQITGAR-GVAASEQTLIQVQKTLQEEKITAKSVALEEGAI--LARFD  68
            Y+ PNLY +D+A+QI+GA  ++  ++  + +  K+L +  I  K+ +L E +   L R+ 
Sbjct  23   YSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKGGLLRLS  82

Query  69   TTDIQLRAREALMGVLGDKYVVALNLAPATPRWLAALYAEPMKLGLDLRGGVHFLMEVDM  128
              + QL A++ +   LGD YVVALNLA +TP WL  + A PMKLGLDL GGVHFL+EVDM
Sbjct  83   KQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVDM  142

Query  129  DTALG---KLQEQNIDSLRSELRDKGIPYATVRKEDNYGLSIAFRDSAARDQAISYLSPR  185
            D A++   K+ E ++ +L   LR   + Y ++ + +N  + ++F D A R+QA + +   
Sbjct  143  DKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAEREQARALVRKT  198

Query  186  HRDLVIST---QGSTGLKAVMTDDRLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGA  242
              D+ I+    +G   L+  +T  +L E REY+++QN+  +RNRVN+LGVAEPLVQRQGA
Sbjct  199  FTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGA  258

Query  243  DRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDSAAAASGRVPGDSEV-KYTREGQP  301
            +RIVVELPG+QDTA AK ILG TA LEFRL        +A+++   G +E+  +   G+P
Sbjct  259  NRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGPDDSKGTTEMFEFREGGRP  310

Query  302  VVLYKR-VILTGDHITDSTSSMDEYNQAQVNISLDSAGGNIMSNFTKDNIGKPMATLFVE  360
                 R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG++MS  T+ N+G++MA +F+E
Sbjct  311  AAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIE  370

Query  361  ------YK----DSGKKDASGRAILAKEEEVINIANIQSRLGNSFRITGISNPTEARQLS  410
                  Y     ++  KD + ++ +  +  +I++A IQS LG+ FRITG++   E+ +L+
Sbjct  371  QRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNGQGESSELA  429

Query  411  LLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATS  470
            LLLRAG+L AP+ + EERTIGP+LG +NI +G++A L G++   LF++ +Y+ FGLIAT 
Sbjct  430  LLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIATV  489

Query  471  ALVANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQA  530
            AL  N+V+++++MSL+ GATLT+PGIAGIVLT+++AVDANVLI  RI+EE++NG +VQ+A
Sbjct  490  ALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRA  548

Query  531  IDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIV  590
            I EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++GI TSMFTAI+ TRA+V
Sbjct  549  ISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMV  608

Query  591  NLLYGGKRVKKLSI  604
            NL+YGG+  KKL I
Sbjct  609  NLIYGGRDFKKLWI  622

405) D7S_00531 in NC_017846


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  404 bits (1519),  Expect = 8e-114, Method: Compositional matrix adjust.
 Identities = 279/630 (45%), Positives = 447/630 (71%), Gaps = 26/630 (4%)

Query  1    MLNRYPLWKNLMVIFVVAIGILYALPNLYGEDPAVQISGTRGQ-EANSAVLSDVQSMLKD  59
            MLN+YPLWK ++++ V+ +G++Y+ PNLY +D+A+QISG+    +   A +      L D
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNLTTKSIVLENGSI--LVRFNNTDTQLLAKDKITEKLGTNYSVALNLAPATPKWLSSIG  117
              +  K+  L + +   L+R+++ + QL AKD +   LG +Y VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRKEKYQYSAIKSIDNFSTG  177
            + PMK GLDL GGV+FL+EVDM+ A+  R    ++ +++ LRKEK +Y ++  ++N    
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQ  179

Query  178  VTLTNSEQLSDVQRYLRKQHPNLDVRAT---SENTLSLGLSDSVLNEARESAIEQNLSIL  234
            + + +  +  + +  +RK   ++++ ++   +   L ++L+ + L E RE +I QNL+ +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRIVNASANLEAAA  294
            R+RV ELGVAE+++QRQGA+RIVVELPGVQDTA AK ILG TA LEFR+  ++ +    +
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD----S  295

Query  295  RGMVPSDSEVKYDRNNRPVVLYKRA-VLGGEHITNASYGVDQNTSLPQVSVTLDSEGGEI  353
            +G   +     +    RP     R+ ++ G+++T+A  + D++   PQV++ LD++GGE+
Sbjct  296  KG---TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGEL  351

Query  354  MSQTTRLNLKKPMATLYVE------YKD---SGKKDENGKTILQKHEEVINVATIQGRFG  404
            MS++TR N+ ++MA +++E      Y     +G   +     ++ +  +I++ATIQ+ +G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  405  SQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQGLQASFWGLMI  464
            SQF+ITG+++ +E+ +LA+LLR+G+L AP+ + EERTIGPSLGA+N+ +G++AS+WG+++
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  VVAFMVIYYRKFgiianialianivllvgliSLLPGATLTMPGIAGIVLAVGMSVDANVL  524
            V  F++  YR FG+IA +AL  N+V+L++L+SLL GATLT+PGIAGIVL++GM+VDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  525  IFERIKEEIRNGRPIQQAINEGYSGAFSSIFDANLTTILTAVALYAVGTGPIKGFAITLS  584
            IF RI+EEI NG  +Q+AI+EG+  A+++I+DANLTT+L +  L+A+GTGP+KGFA+T+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  585  LGIAISMFTAITGTRAIVNFLYGGKRIDKL  614
            LGI  SMFTAI  TRA+VN++YGG+ + KL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

406) secD in NC_021741


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  403 bits (1517),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 296/623 (48%), Positives = 444/623 (72%), Gaps = 31/623 (4%)

Query  1    MLIVVIFIGLLYALPNIYGEDPAVQITGAR-GVAASETTLDQVRTVLEKDKITSKSIALE  59
            +++ V+ +G++Y+ PN+Y +D+A+QI+GA  ++  +++ +D+    L    I  K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGAI--LARFSNPDIQLRAREALMAELGDKFVVALNLAPATPAWLAMLGAEPMKLGLDLR  117
            + +   L R+S+ + QL A++ +   LGD +VVALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALSKLQEQTMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQ  177
            GGVHFL+EVDMD A+        + +++ LR   + Y S+ +L+N  +++ F DDA R+Q
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQLGFGDDAEREQ  190

Query  178  AISYLSPRQRDMVFSA---NGSNTLKANLTDARLSEAREYAVQQNITILRNRVNQLGVAE  234
            A + +     D  +++   NG   L+  LT A+L+E REY+++QN+T +RNRVN+LGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  PLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLvntnadvtaaanGRVPGDSEVK  294
            PLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D          G +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEMF  302

Query  295  DTREG-QPVVLYKR-VILTGDHITDSTSSTDEYNQPQVNISLDSAGGTAMSNFTKDNIGK  352
            + REG +P     R +I+TGD++TD+ +S DE  +PQVNI+LD+ GG  MS  T+ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  353  PMATLFVE------YK----DSGKKDANGRAILVKQEE-VINVANIQSRLGNSFRITGIG  401
            +MA +F+E      Y     ++  KD   +++  K++  +I++A IQS LG+ FRITG+ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGSQFRITGLN  420

Query  402  NPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWY  461
               E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A LWG++   +F++  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  462  RKFGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL  521
            R FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  522  KNGRSVQQAIHEGYKGAFSSIVDANittlitaiilYAVGTGSIKGFAITTAIGVATSMFT  581
             NG +VQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TSMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  582  AIVGTRAIVNLLYGGKRINKLSI  604
            AI+ TRA+VNL+YGG+ ++KL I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

407) CYCME_1162 in NC_021917


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  403 bits (1516),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 285/618 (47%), Positives = 446/618 (73%), Gaps = 27/618 (4%)

Query  3    LVVAIIYALPNLYGEDPSVQISPLRGAV-INSSVLADVKDQLAQKGVALLKGELNDSQI-  60
            LVV++IY+ PNLY +D+++QIS    A+ +  + +      L++ G+++  + L ++   
Sbjct  17   LVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKG  76

Query  61   -LLRFKHSNDQLKAVDIIKSVLGNNYVVALNLAPTTPQWLRSLNAAPMYLGLDLRGGVHF  119
             LLR+   +DQL A D+++  LG++YVVALNLA TTP+WLR++ A+PM LGLDL GGVHF
Sbjct  77   GLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHF  136

Query  120  LLEVDMQAAEKQAVDRGAADFRQYLRENKLRYLSVMVNGHNVGIKFRNQQIHDEAISKLE  179
            LLEVDM+ A    +    ++ +  LR +K+RY S+   G+ + + F ++  +++A + + 
Sbjct  137  LLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGDDAEREQARALVR  196

Query  180  SQFRTWDFKPEVSE-SSTPTLTATMSDDELMDVRNYAVQQNIITLKNRVNELGVAEPVIQ  238
              F   DF    +E ++ P L  +++   L ++R+Y+++QN+ T++NRVNELGVAEP++Q
Sbjct  197  KTFT--DFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQ  254

Query  239  RQGESRIVVELPGVQDTARAKEILGATATLEYHLVDTQNSVSSALAGRVPIGSKLYNRRD  298
            RQG +RIVVELPGVQDTA AK ILG TA LE++L    +   ++        + +++ R+
Sbjct  255  RQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT--------TEMFEFRE  306

Query  299  GGQ--ILLKKQVIVTGNEIVDASSGIEGDTGSAMVSVSLDGPGGKKMSKTTRENIGKPMA  356
            GG+    + + +I+TG+++ DA ++++ + G + V+++LDG GG  MS++TR N+G++MA
Sbjct  307  GGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGGELMSRATRSNVGRSMA  365

Query  357  VVFIENRTDI----KMVNGE----PVR-YKTVVEEVINVATIRGHFSNRFQTTGLDNSae  407
            V+FIE+R       +MVNG     PV+ +K     +I++ATI++ ++++F+ TGL+  +E
Sbjct  366  VIFIEQRPTTTYTRQMVNGVEKDVPVQTFKED-KKIISLATIQSPLGSQFRITGLNGQGE  424

Query  408  ardlalllragalaaPIDIVEERTVGPSLGQDNIDKGFNSVMIGFVLVLIFMAIYYKTFG  467
            + +LALLLRAG+LAAP+ + EERT+GPSLG DNI KG ++ + G ++V +F+   Y+ FG
Sbjct  425  SSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFG  484

Query  468  LFADVALAFNLVFIVAVLSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEEIKNGNS  527
            L+A VALAFN+V ++A++SLL ATLTLPGIAGIVLT+GMAVDANVLIF RI+EEI NG +
Sbjct  485  LIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMT  544

Query  528  PQASIAAGYDKAFStiadanittliaaiiLFGFGTGPIKGFAITLSIGILTSMFTAIIGT  587
             Q +I+ G+D+A+++I DAN+TTL+ + ILF+ GTGP+KGFA+T+S+GI+TSMFTAI+ T
Sbjct  545  VQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVT  604

Query  588  RALVNVTFGSRQIEKLKI  605
            RA+VN+ +G+R++ KL I
Sbjct  605  RAMVNLIYGGRDFKKLWI  622

408) Tcr_1331 in NC_007520


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  403 bits (1518),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 292/633 (47%), Positives = 454/633 (72%), Gaps = 31/633 (4%)

Query  11   NQYPAWKYllllivlvlgviYAAPNIFGDDPAVQIS-PAKSVQFDASTEDLVTQTLQKAS  69
            N+YP WKY+L+L VLV+G IY+APN++ DD+A+QIS ++ ++Q   +  D  +++L  A+
Sbjct  3    NKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAG  62

Query  70   L--KPKSMAYQNGQFLIRFHNTDEQMKARSALKEVMGRQAVVALNLAPATPDILRAVGGE  127
            +  K+ S+A +    L+R+ + ++Q+ A+  ++  +G + VVALNLA +TP+ LR VG+ 
Sbjct  63   IPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGAT  122

Query  128  PMYLGLDLRGGVHFLMDVDMEAAVQKTYNRYVDEVKGAFREARIRYLSVSYETDHLMIKF  187
            PM LGLDL GGVHFL++VDM+ A++   + Y +EVK+ +R  ++RY S++   + + + F
Sbjct  123  PMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGF  182

Query  188  RDAKSVSAAQAEMEKQFPGEFNLAP--VDGQNALELRLQPKTIEEAKTYALKQNITTLRN  245
             D      A+A + K F  +F+++P  ++G   L + L P  + E + Y++KQN+TT+RN
Sbjct  183  GDDAEREQARALVRKTFT-DFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  246  RINELGVAEPVIQQQGDRRIVVQLPGVQDTAKAKEILGATATLEFRLVEERGDAYRAEKT  305
            R+NELGVAEP++Q+QG  RIVV+LPGVQDTA AK ILG TA LEFRL    +D+      
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS------  295

Query  306  GYAPNGSRLYHFRDG-RPIL-LKRSIIVSGDNVINAQSGIETESGSAQVTVTLDGAGGRK  363
                  + +++FR+G RP   + R++I++GD+V +A+++++ E G +QV + LDG GG  
Sbjct  296  ---KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDGHGGEL  351

Query  364  MLATTKENIGHRMAVVYIENR---------VETIEKNGEKVKKRITTKDVINAAVIRGQF  414
            M  +T+ N+G+ MAV++IE+R         V+ +EK+   V+     K +I+ A I++ +
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVP-VQTFKEDKKIISLATIQSPL  410

Query  415  ANRFQITGLDSPQEAQDlalllragalaaPMEIVEERTVGPSLGQDNINQGMMSVIVGFL  474
            +++F+ITGL++  E+ +LALLLRAG+LAAPM + EERT+GPSLG DNI +G+ + + G L
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  475  LV-LVIMVWRYKTLGMIANMALTLNLILIVAVLSLLQATLTLPGIAGIVLTVGMAVDANV  533
            +V L IM   Y+ +G+IA +AL++N+++++A++SLL ATLTLPGIAGIVLT+GMAVDANV
Sbjct  471  FVSLFIMA-IYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  534  LIFERIREELRTS-SVQSAINAGYEKAFVTIADANITTLLAALVLFSFGTGPIKGFAITL  592
            LIF RIREE+  + +VQ AI+ G+++A+ +I DAN+TTLL + +LF+ GTGP+KGFA+T+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  593  SIGIITSMFTAILGTRAIVNALYGNKPVEKLSV  625
            S+GI+TSMFTAI+ TRA+VN +YG +   KL +
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

409) Q7A_2355 in NC_017857


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  403 bits (1517),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 290/634 (46%), Positives = 454/634 (72%), Gaps = 29/634 (4%)

Query  1    MNRYPLWKNLLvvavivtaiiyaMPNLFGDDPAVQVSAGRLNSVDLQL----VNEIESTL  56
            +N+YPLWK +L++AV+V ++IY+ PNL+ DD+A+Q+S++   S  LQ+    V+    +L
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGA---STALQVTQADVDRAAKAL  58

Query  57   KQAEIPYKGVVLEENRL--LIRFSEADEQLEARELIQQNLSSEDYIVALNLAPNTPAWLR  114
             +A IP K+  L EN    L+R+S  ++QL A++++++ L+ +DY+VALNLA  TP WLR
Sbjct  59   TDAGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALG-DDYVVALNLARTTPNWLR  117

Query  115  SLGAEPMNLGLDLRGGVHFLMEVDMNAVLKQTLESYASDIRILLRDKTIRYTQVNVENGV  174
            ++GA PM+LGLDL GGVHFL+EVDM+  +   L  Y ++++ LLR   +RY  +     V
Sbjct  118  NVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV  177

Query  175  LAFGFRETADRDAAIIEIGREYNELEVVIDENAERPSIAINLNEATVRETQNLALQQNIT  234
            + +GF + A+R+ A   + + + ++E+   E    P + + L  A + E ++ +++QN+T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  235  TLRNRINELGVAEPTVQQQGQDRIVVQLPGVQDTAQAKKILGTTATLEFRLVDFESDVQD  294
            T+RNR+NELGVAEP VQ+QG +RIVV+LPGVQDTA+AK+ILG TA LEFRL    +   D
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPD  293

Query  295  AVNGRVPANSELY-YHRDGRP-YLLNKRVMLTGEHVINAASTIDGQTGSPAVSVTLDGKG  352
              +G     +E++ ++ +GRP   +++ +++TG++V +A +++D + G P V++ LDG G
Sbjct  294  DSKG----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  353  ARIFSNITRDNIGNPMSVVFIESKTET----QTIDG--EEVTVR--RQLPEIISVATIRD  404
            + + S  TR N+G +M+V+FIE +  T    Q ++G   +V V+  ++   IIS+ATI+ 
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  405  QLGKKFQITGLDSTTEardlalllragalaaPIDIVEERTVGPSLGQENIDQGFASVMIG  464
             LG +F+ITGL++  E+ +LALLLRAG+LAAP+ + EERT+GPSLG +NI +G  + + G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  465  FALVLVFMIIWYRLFGavanlalaanlvlivallSMLQATLTMPGIAGIVLTVGMAVDAN  524
              +V +F++  YR+FG +A +ALA N+V+++AL+S+L ATLT+PGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  525  VLIFERIREELKLGNSPRASIDAGYAKAFSTIADANITTLIAAIVLFGFGTGTIKGFAIT  584
            VLIF RIREE+  G + + +I  G+ +A+++I DAN+TTL+ + +LF+ GTG +KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  585  LTLGILTSMFTAIVGTRMVINLVYGRKQRPKLSI  618
            ++LGI+TSMFTAI+ TR ++NL+YG ++  KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

410) MEALZ_0496 in NC_016112


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  403 bits (1515),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 296/629 (48%), Positives = 458/629 (73%), Gaps = 25/629 (3%)

Query  1    MQNRFPLWKNllilivfligliYALPNLFGDDPSVQVSFSNAT-TVETAQVQQIEELVKQ  59
            M N++PLWK +LIL V+++G+IY+ PNL+ DD+++Q+S ++++  V  A+V++    + +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AGMIIKE---VETGNGNVLVRFNDTNDQLKAADLLRDRLGNDATVALNLAPATPGWLRAL  116
            AG+ +K     E G+G +L R++  +DQL A D++R  LG+D  VALNLA +TP WLR +
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  GASPMYLGLDLRGGVHFMLEVDMDAAVKQAEERYNDDVRSALRDAKIRYQSVSQETGYIR  176
            GA+PM LGLDL GGVHF+LEVDMD A+      Y+++V++ LR  K+RY+S++Q    I+
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  177  VKLRSEEDTNAAVAVLDKDFSTLNIERPNVEN--ELWLRITDAEQKEVKKFALAQNITTL  234
            + +  + + + A A++ K F+ ++I  ++++    L++ +T A   E++ +++ QN+TT+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  235  RNRVNELGVAEPVIQQQGNNRIVVQLPGIQDTTRAKDILGTTATLEYRLVDVEHDVQKAL  294
            RNRVNELGVAEP++Q+QG NRIVV+LPG+QDT+ AK ILG TA LE+RL    +D + + 
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT-  298

Query  295  KGRPPVGSRIY-YEKNGNPIL-LDRRIIVTGDQIVDASSGLDQNSSPAVFVTLNGIGAKK  352
                   + ++ +   G P   ++R +I+TGDQ+ DA +++D+++ P V + L+G G+  
Sbjct  299  -------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  353  MGKVTSENIGRPMAVVFVEYKVKT---RE-VNGekvrtkekv----ekvISIATIRDAFS  404
            M++ T  N+GR+MAV+F+E +  T   R+ VNG       +      K+IS+ATI+ +++
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  405  KRFQTTGLDSTTEarnlalllragalaaPVDIVEERTVGPSLGQDNIDQGMRSvmvgfvl  464
             +F+ TGL++  E+ +LALLLRAG+LAAP+ + EERT+GPSLG DNI +G+ + + G ++
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  vllfmAAYYRVFGLVANLALGFNLVLVVAVLSMLQATLTMPGIAGIVLTIGMAVDANVLI  524
            V LF+ A YR FGL+A +AL+FN+V+++A++S+L ATLT+PGIAGIVLT+GMAVDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  525  FERIREEIKNGNTPQSSIFAGYEKAFGTIFDANITTLLVALVLFGFGTGPVKGFAVTLSI  584
            F RIREEI NG T Q +I  G+++A+ +I+DAN+TTLLV+ +LF+ GTGPVKGFAVT+S+
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  585  GILSSMFTAILGTRMVINWIYGSRRVEKL  613
            GI++SMFTAI+ TR ++N IYG+R   KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

411) MU9_3268 in NC_020418


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  401 bits (1507),  Expect = 7e-113, Method: Compositional matrix adjust.
 Identities = 288/609 (48%), Positives = 440/609 (73%), Gaps = 31/609 (5%)

Query  15   PNLYGEDPAVQITGARGT-AANEQTLDQVRTILEKDQIASKSVALENGVI--LARFSNPD  71
            PNLY +D+A+QI+GA  +    +  +D+    L    I+ K+ +L +     L R+S+ +
Sbjct  26   PNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKGGLLRLSKQE  85

Query  72   IQLRAREELVKGLGEQYVVALNLAPATPKWLTAVGGEPMKLGLDLRGGVHFLMEVDMETA  131
             QL A++ + K+LG++YVVALNLA +TP+WL  VG+ PMKLGLDL GGVHFL+EVDM+ A
Sbjct  86   DQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKA  145

Query  132  L-GKLQEQNLDGIRSLLRENSIPFASVRKSADYGVEVRFRDDASRSEASSLLSKRLRDLV  190
            + ++L+  + + +++LLR + + + S+ + ++  +++ F DDA R +A +L+ K + D+ 
Sbjct  146  IDARLKVYE-GEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQARALVRKTFTDFE  203

Query  191  FKDGTDNTLTAV---MSDQRLSEARSYAVMQNITILRNRVNQLGVAEPLVQRQGADRIVV  247
            +  +  N +  +   ++  +L+E R Y++ QN+T +RNRVN+LGVAEPLVQRQGA+RIVV
Sbjct  204  ITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVV  263

Query  248  ELPGIQDTARAKEILGATATLEFRLVNGAVDPAAIEAGRIPGDTEV-KYTRDGRKVALYK  306
            ELPG+QDTA AK ILG TA LEFRL  G+ D+         G TE+  +  +GR  A   
Sbjct  264  ELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTTEMFEFREGGRPAAAVE  315

Query  307  R-VILTGDHITDSTSQSDEYGQPQVSISLDSAGGNTMSDFTKDNLYKPMATLFVE-----  360
            R +I+TGD++TD+ +  DE G+PQV+I+LD+ GG+ MS  T+ N+ ++MA +F+E     
Sbjct  316  RGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTT  375

Query  361  -YK----DSGRKDAAGRSILEKNEEVINIANIQSRLGSNFRITGIDNANEARQLSLLLRA  415
             Y     ++  KD + ++ +  +  +I++A IQS LGS+FRITG++   E+ +L+LLLRA
Sbjct  376  TYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRA  434

Query  416  GALIAPIQIVEERTIGPTLGLQNIEQGLEACLWGLMASILFMVIYYRKFGliassallan  475
            G+L AP+ + EERTIGP+LG +NI +G++A LWG++   LF++  YR FGLIA+ AL  N
Sbjct  435  GGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFN  494

Query  476  liliVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGY  535
            +++++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+EE+ NG +VQ+AI EG+
Sbjct  495  MVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAISEGF  553

Query  536  KGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYG  595
              A+++I+DANLTTL+ + IL+A+GTG++KGFA+T ++G+ TSMFTAI+ TRA+VNL+YG
Sbjct  554  DRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYG  613

Query  596  GKRINKLSI  604
            G+ ++KL I
Sbjct  614  GRDFKKLWI  622

412) secD in NC_006370


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  400 bits (1505),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 312/632 (50%), Positives = 458/632 (73%), Gaps = 25/632 (3%)

Query  1    MLNRYPLWKNlmvvlallvgllyalPNVYGEDPAIQITGARGA-SVDMSTLDTVTEDLKK  59
            MLN+YPLWK ++++  L+VG++Y+ PN+Y +D+AIQI+GA  A  V  + +D  +  L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NNISYKSVAFENGT--VLVRFNDTDTQISARDIINEQLGDDFVVALNLAALTPDWLESIG  117
              I+ K+ ++ +     L+R++  + Q++A+D++   LGDD+VVALNLA  TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ASPMKLGLDLRGGVHFLMEVDMDAAMEKLLGQQEETFRTELREAKVRYRAISKTDSSVAV  177
            A+PMKLGLDL GGVHFL+EVDMD A++  L   E   ++ LR  KVRYR++++ ++ + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  RLRNDEDLKAAETALAQLHPDMLFTDSNSNGRFVLTAQFTEARLKEIRNYAVEQNITILR  237
             + +D +   A + + +   D  +T ++ NG  VL   +T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGANRIVVELPGVQDTARAKEILGATATLEFREVDSTADLaaaaa  297
            NRVNELGVAEPLVQRQGANRIVVELPGVQDTA AK ILG TA LEFR   +  D      
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD------  294

Query  298  GRVPAGSEVKYT-RD--KRPAVLKKRIILAGSHITDASSSADEYGRPQVNISLDSEGGSK  354
               + G+   +  R+  + +A + + +I++G ++TDA +S DE GRPQVNI+LD++GG  
Sbjct  295  ---SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  MTAFSRNNVGKLMATVFTEYKDSG--KRQ----ADGKVILQKHEE---VINQATIQTALG  405
            M+  +R+NVG+ MA +F E + +    RQ     +  V +Q   E   +I+ ATIQ++LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  406  RNFRITGIDSQAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQAMIWGMVA  465
             +FRITG+++Q+E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  466  VMLFTLIYYRGFGLIANMALVMNLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVL  525
            V LF +  YR FGLIA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVL
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL  530

Query  526  IFerireelregrSPQQAIQQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLS  585
            IF RIREE+ +G + Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  586  IGILTSMFTAIIGTRAVVNFVYGGKRVDKLSI  617
            +GI+TSMFTAI+ TRA+VN++YGG+   KL I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

413) Thivi_3127 in NC_018012


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  400 bits (1504),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 289/628 (47%), Positives = 444/628 (71%), Gaps = 21/628 (3%)

Query  1    MNRYPLWKNllilgvilaslllaWPNLYSQDPSIEITAARGA-EVTEASVGEVRAALENA  59
            +N+YPLWK +LIL+V++ +++ + PNLY++D++I+I++A  A +VT+A V+    AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   GVPVKGIETREGGKL-LVRFAAPGEQLRGQEAIERSLSTKYRTALTQSADLPGWMRAVGL  118
            G+PVK+    E GK  L+R++   +QL +++ + ++L+  Y  AL  +   P W+R VG 
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMSLGLDLRGGIHVVIDVDMDAALDQTLERYLGDLRTQLRDKKIRYVTATREGGRILVK  178
             PM LGLDL GG+H +++VDMD A+D  L  Y G++++ LR  K+RY +  + G  I + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FNDAETRDAGEKVLSREFRDLTVQSSQDEDRYLVEASLPEVEQQKIKDFALEQNITTLRN  238
            F D   R+ +  ++ + F D+ + +++ ++  ++  +L       I+++++ QN+TT+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNALGVAEPSIARQGERRIVVQLPGAQDPGRLKELLGATATLEYRLVDTEGSVADAVAG  298
            RVN LGVAEP + RQG  RIVV+LPG QD +  K +LG TA LE+RL    G+ +D   G
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPDDSKG  297

Query  299  RVPVGSKLY-YERDGRPIL-LKRRVIVTGDQITDASAGFDGQSGTPAVFVNLDGQGARRM  356
                 + ++ +  +GRP   + R +I+TGDQ+TDA A+FD + G P V +NLDG+G+  M
Sbjct  298  ----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELM  352

Query  357  RDVTTENVGKPMAVVFIENRTTT----ELVNGE----PVKTTRKVEEVISVASIREPFGR  408
               T  NVG++MAV+FIE+R TT    ++VNG     PV+T +    +IS+A+I+ P+G 
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS  412

Query  409  RFQTTGLDSSAEAHDTALLLRSGALAAPIQIVEERTIGPSLGQDNIDQGVRSVLIGLALV  468
            +F+ TGL++ +E+ + ALLLR+G+LAAP+ + EERTIGPSLG DNI +GV + L G+ +V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  469  VIFMGLYYRAFGmvanlvlvvnlvmivailSMLQATLTLPGIAGIVLTVGMAVDANVLIF  528
             +F+   YR FG++A + L  N+VM++A++S+L ATLTLPGIAGIVLT+GMAVDANVLIF
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  529  ERIREEIRNGNSPQASIHAGYDKALSTIVDSNVTTLIAAVVLFSFGTGPVKGFAVTLFIG  588
             RIREEI NG + Q +I  G+D+A ++I+D+N+TTL+ + +LF+ GTGPVKGFAVT+ +G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  589  ILSSMFTAILGSRALINLIYGGRRLNKL  616
            I++SMFTAI+ +RA++NLIYGGR ++KL
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

414) D781_0981 in NC_020064


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  398 bits (1498),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 294/625 (48%), Positives = 445/625 (72%), Gaps = 35/625 (5%)

Query  1    MLIVVIAVGLLYALPNIYGEDPAVQITGAR-GVAASETTLDQVRTVLEKDHIASKSIALE  59
            +++ V+ VG++Y+ PN+Y +D+A+QI+GA  ++  +++ +D+    L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFKDPDVQLRAREALMSALGDKYVVALNLAPATPRWLSMLGAEPMKLGLDLR  117
            E +   L R+   + QL A++ +  ALGD YVVALNLA +TP WL  +GA PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALS---KLQEQTIDTLRSDLREKGIPYASIRKLDNNGVEVRFRDKDA  174
            GGVHFL+EVDMD A+    K+ E  + +L   LR   + Y S+ +L  N +++ F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQL-GNVIQLGFGDDAE  187

Query  175  RDRAISYMTPRQRDYVFSS---NGSNAMKVTLTDARLSEAREYAVQQNITILRNRVNQLG  231
            R++A + +     D+ +++   NG   ++++LT A+L+E REY+++QN+T +RNRVN+LG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLvntnvdataaanGRVPGDS  291
            VAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL     D+         G +
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK--------GTT  299

Query  292  EVKNTREG--QPIVLYKRVILTGDHITDSTSTMDEYNQPQVNISLDSAGGNSMSNFTKDN  349
            E+ + REG   +  + + +I+TGD++TD+ ++ DE  +PQVNI+LD+ GG+ MS  T+ N
Sbjct  300  EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSN  359

Query  350  IGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINVANIQSRLGNSFRITG  399
            +G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS LG+ FRITG
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITG  418

Query  400  IGNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLVASIVFMVV  459
            +    E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NI +G++A LWG++   +F++ 
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  460  WYRKFGVIATSALVVNLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE  519
             YR FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI  RI+E
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  520  ELKNGRSVQQAIHEGYKGAFSSiidanittlitaiilYAVGTGSIKGFAITTAIGVATSM  579
            E+ NG +VQ+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T ++G+ TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  580  FTAIVGTRAIVNLLYGGKRINKLSI  604
            FTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  598  FTAIMVTRAMVNLIYGGRDFKKLWI  622

415) vfu_A02793 in NC_016602


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  398 bits (1497),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 313/630 (50%), Positives = 455/630 (73%), Gaps = 21/630 (3%)

Query  1    MLNRYPLWKYLMVVFAIAISALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTKALDT  59
            MLN+YPLWKY++++  + ++ +Y+ PN+Y +D+AIQ++GA  A  V  + +D  +KAL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   AHLSHKSIALEDGSI--LVRFNDTDTQISARDVISEALGSDKIVALNLAASTPSWLESIG  117
            A ++ K+ +L + +   L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AAPMKLGLDLRGGVHFLMEVDMDAAMEKLIGQQEEAFRSELREEKIRYRAIRPLANSVEI  177
            A+PMKLGLDL GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L+N +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  TLRDAEQVEQARKALESKHRDMTFVPSGTEGRFTLTATFTEARLQEIRNYAVEQNITILR  237
             + D  + EQAR  +     D  + P+  +G   L  ++T A+L EIR+Y++ QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddqadlaaaaa  297
            NRVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPD  293

Query  298  GRVPAGSEIKLDRSGRP-VVLKKRVILGGSSITDASSSTDEYGRPQVNISLDSEGGSKMS  356
            +   +   + +  +GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG  MS
Sbjct  294  DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  AFSKKNIGKLMATVFAE------YKDSGEKTAEGKV---ILAKHEEVINQATIQSALGRN  407
              ++ N+G+ MA +F E      Y     +  E  V    +  +  +I+ ATIQS+LG +
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQ  413

Query  408  FRITGINSVAEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGLLAVM  467
            FRITG+N+ +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WG+L V 
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  468  IFTALYYRKFglianvalaanlvliigvMSMIPGATMTLPGIAGIVLTVGMAVDANVLIF  527
            +F    YR FGLIA VALA N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  528  erireelregrNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIG  587
             RIREE+ +G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+G
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  588  ILTSMFTAIIGTRCIVNLLYGGKRINKLSI  617
            I+TSMFTAI+ TR +VNL+YGG+ ++KL I
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

416) secD in NC_011901


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  398 bits (1498),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 302/625 (49%), Positives = 447/625 (72%), Gaps = 20/625 (3%)

Query  1    MINQYPLWKYllivvvvavgalyaMPNLYPEDPAVQISNTTTD-EVDEATRRQVEAVLAG  59
            M+N+YPLWKY+LI+ V+ VG +Y+ PNLYP+D+A+QIS ++T  +V +A   +    L++
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   RGLNPK-TGVEYDGQHVLLRFDNTDDQLQAADILRTALMGTQNVVALNLAPATPDWLRTF  118
             G+  K +++  +G+  LLR+ + +DQL A D++R AL G + VVALNLA +TP+WLR  
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-GDDYVVALNLARTTPNWLRNV  119

Query  119  NARPMSLGLDLRGGVHFLMEVDMAAVVTASHERYVGEFRSLLRDERIRYLSVERASEGVV  178
             A PM LGLDL GGVHFL+EVDM   + A    Y GE ++LLR E++RY S+ + ++ + 
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQ  179

Query  179  VRFRDAAERDQAGDFLRREYRGDLDFRSDQAGEVFLLIASLTQDTLTDQRRLALQQNITT  238
            + F D AER+QA  ++R+ +  D+++ + +   + +L  +LT   L++ R  +++QN+TT
Sbjct  180  LGFGDDAEREQARALVRKTF-TDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  239  LRNRVNELGVAEPIIQQQGEDRIVVQLPGVQDTARAKEILGATATLEFRLVDEENDPFEA  298
            +RNRVNELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG TA LEFRL    +D+   
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS---  295

Query  299  AATGRVPSASRLYRERNGNPVLLRRQVMLTGDYIVDAASGIAQDSGGPAVFINLDAQGAR  358
                +  +    +RE    +  + R +++TGD + DA +++ ++ G P V INLD++G+ 
Sbjct  296  ----KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDGHGGE  350

Query  359  IFSRVTGENIGRLMGTVFIETKTETV--------EENGEMVRRTTRTEEVINVARIQDQL  410
            + SR T  N+GR M+ +FIE +  T          E++  V+       +I++A IQ  L
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  411  GRRFQITGLESTREarnlalllragalaaPMTIVEERTVGPSLGRDNIERGFNSVVIGFI  470
            G +F+ITGL++  E+ +LALLLRAG+LAAPM + EERT+GPSLG DNI +G ++ + G +
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  471  LVLIFMALYYRVFGlvanvalalnlvlivsvlsMLQATLTLPGIAGIVLTVGMAVDANVL  530
            +V +F+   YR FGL+A VALA+N+V++++++S+L ATLTLPGIAGIVLT+GMAVDANVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  531  IFERIREELRNGNSPQAAIASGYDRAFSTIVDANITTLIAALVLFMFGTGPIKGFAITLS  590
            IF RIREE+ NG + Q AI+ G+DRA+++I+DAN+TTL+ + +LF  GTGP+KGFA+T+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  591  IGIVISMFTAILVTRAIINLIYGRR  615
            +GI  SMFTAI+VTRA++NLIYG R
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGR  615

417) secD in NC_021291


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  398 bits (1498),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 299/628 (48%), Positives = 437/628 (70%), Gaps = 27/628 (4%)

Query  1    MNRYPLWKYVLLVAVIAAGCLYALPNLFGQDPALQVTTADGSPPDERTQSE-ILTLLADE  59
            +N+YPLWKYVL++AV+  G +Y+ PNL+ +D+A+Q++ A  +    +++ +     L+D 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   GIDLGEAEVLDEQY--LLRLPDTDAQVRAADELDVALGRDFTVALNLAPATPDWLRNLGG  117
            GI +  + + ++    LLRL+  + Q+ A D +  ALG D+ VALNLA +TP+WLRN+G+
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  118  QPMYLGLDLRGGVHFLMEVDMDAVMEQTLSRYGDEFRRLLRESDIRYREVadaaadtead  177
             PM LGLDL GGVHFL+EVDMD  ++  L  Y +E + LLR   +RYR +++ +      
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV----  177

Query  178  MVIRFAGPDTRDAGISLLRDEYPELVFATDEDEEEARLTATLTDEERQEVRNFAVEQNIT  237
            + + F++   R+ + +L+R  + ++ ++  E +  + L  +LT     E+R++++ QN+T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  238  TLRNRVNELGVAEPIIQRQGAERVVVQLPGVQDTARAKDIIGATATLEFRMVDADNFPYR  297
            T+RNRVNELGVAEP++QRQGA+R+VV+LPGVQDTA AK I+G TA LEFR+         
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---------  288

Query  298  GGDDSPPPPGTERFPERDGGH--VLLEREVIITGEAITDAQSGLDTQTGQPEVNIRLSGA  355
            G++   +   TE F  R+GG+    +ER +IITG+ +TDA++++D + G+P+VNI L G 
Sbjct  289  GAGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGH  347

Query  356  GGNMMNRVTGDRVGDHMAVVFKET--------EIQAervgdevvreqvqveevINIARIQ  407
            GG++M+R T   VG  MAV+F E         ++      D  V+   +   +I++A IQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  408  EQLGSQFRITGLESSQEarnlslllragslaaPMQIIEERTIGPSLGQENIDQGIAAVAI  467
              LGSQFRITGL++  E+ +L+LLLRAG+LAAPM + EERTIGPSLG +NI +G+ A   
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  468  GFLLVVGFMAVYYKVFGlvanvalfvnlvlivaalsalqatltlPGIAGIVLTVGMAVDA  527
            G L+V  F+   Y+ FGL+A VAL  N+V+++A +S L ATLTLPGIAGIVLT+GMAVDA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  528  NVLIFERIREELRSGTSAQQAIEAGYGKALSTIADANVTTLIAAVVLFVFGTGPVKGFAV  587
            NVLIF RIREE+ +G + Q+AI  G+++A ++I DAN+TTL+ + +LF  GTGPVKGFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  588  TLSIGIVSSMFTAILGTRAIVNLIYGGR  615
            T+S+GI +SMFTAI+ TRA+VNLIYGGR
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGR  615

418) Nhal_2359 in NC_013960


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  398 bits (1498),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 300/631 (48%), Positives = 452/631 (72%), Gaps = 25/631 (3%)

Query  1    MNRYPLWKNllvlvvvlvGILYAAPNLFGDTPALQISATRGA-SLEPEILTRVEQLLKER  59
            +N+YPLWK +L+L V++VG++Y+APNL+ D +A+QIS++  A  +    + R  + L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   GLDYQSVRLEDQRL--LVRLRQAETQLKAQDALREELGSDYSIALHLAPATPSWLRTIGG  117
            G+  ++  L ++    L+RL + E QL A+D +R  LG DY +AL+LA +TP+WLR +G+
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  118  LPMNLGLDLRGGVHFLMEVDMEAAVQQAEERYVEDLRSLLRENRLRYLSIGRLGAGGVEI  177
             PM+LGLDL GGVHFL+EVDM+ A++     Y  ++++LLR +++RY S+ +LG   +++
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQL  180

Query  178  KFRNTEQRDQAETLIHDEYFDLLLQPVEEGGSPRLEITLSEEEKREIQRLALQQNITTLR  237
             F +  +R+QA +L++  + D+ + P E  G P L ++L+     EI+  +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRINELGVAEPTIQQQGRNRIVVQLPGVQDTARAKEILGATATLEFRLVDVTHEVQRAVE  297
            NR+NELGVAEP +Q+QG NRIVV+LPGVQDTA AK ILG TA LEFRL    ++ + + E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  298  GRVPAGSRLY-YERGGAPIL-LKKRVILTGDHIIDAASGIDQQSGSPAVFVTLDGQGARL  355
                    ++ +  GG P   + + +I+TGD++ DA +++D++ G P V + LDG+G+ L
Sbjct  301  --------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGEL  351

Query  356  FSKVTGENIGKPMAVVFIETKTETR--------MEEGESVKLHRRVPEVINVATIRDQLS  407
             S+ T  N+G++MAV+FIE +  T         +E + +V+  +    +I++ATI+  L+
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  408  KRFQITGLDSTEEarnlalllragalaaPIDIIEERTIGPSLGQDNIEKGFQSVLIGFAL  467
             +F+ITGL++  E+ +LALLLRAG+LAAP+ + EERTIGPSLG DNI KG ++ L G  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  468  VLVFMALYYRVFGLIADlaltvnlvllvsllsllqatltlPGIAGIVLTVGMAVDANVLI  527
            V +F+   YR FGLIA +AL+ N+V+L++L+SLL ATLTLPGIAGIVLT+GMAVDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FQRIREELRNGNSPQASIEAGYANALSTIADANITTLIAAIVLFGFGTGPIKGFAVTLSL  587
            F RIREE+ NG + Q +I  G+  A ++I DAN+TTL+ + +LF+ GTGP+KGFAVT+SL
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIIGTRAVINLIYGGR--RKVRL  616
            GI+TSMFTAI+ TRA++NLIYGGR  +K+++
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

419) secD in NC_013971


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  398 bits (1496),  Expect = 5e-112, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 461/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYIMlivvllvgllyalpnlYGEDPAVQVTGARGS-AASEQTLVQIQSALKQ  59
            MLN+YPLWKY++++ VL+VG++Y+ PNLY +D+A+Q++GA  +   ++  + +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSVALE---KGAILARFANTDVQLRAREAIIKVLGDDYVValnlapatpawlatl  116
              I  K+ +L    KG++L R+++ + QL A++ + K LGDDYVVALNLA +TP WL  +
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  saEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSVPYVNVRKTGNYGL  176
            +A PMKLGLDL GGVHFL+EVDMD A++       +++++ LR   V Y ++ + GN  +
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VI  178

Query  177  EIRFRDDKTRDEAVSYLTTRHRDMVINSS---GSNALTAVMSDERMREAREYAVQQNINI  233
            ++ F DD  R++A + +     D  I ++   G   L   ++  ++ E REY+++QN+  
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDATAA  293
            +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL      ++++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL------GAGP  292

Query  294  ANGRVPGDSEVKDTREG--QPVVLYKRVILTGDHITDSTSSNDEYNQPQVNISLDSAGGN  351
             +++  G +E+ + REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ GG+
Sbjct  293  DDSK--GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  352  IMSNFTKDSVGKAMATLFVE------YK----DSGKKDANGRAILEKHEEVINVANIQSR  401
            +MS  T+ +VG++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS 
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSP  409

Query  402  LGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEACLWGL  461
            LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP++GA+NIT+G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  IASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
            +   +F++  Y+ FGL+AT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAIT  581
            VLI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

420) secD in NC_013961


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  398 bits (1496),  Expect = 5e-112, Method: Compositional matrix adjust.
 Identities = 300/634 (48%), Positives = 461/634 (73%), Gaps = 31/634 (4%)

Query  1    MLNRYPLWKYIMlivvllvgllyalpnlYGEDPAVQVTGARGS-AASEQTLVQIQSALKQ  59
            MLN+YPLWKY++++ VL+VG++Y+ PNLY +D+A+Q++GA  +   ++  + +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSVALE---KGAILARFANTDVQLRAREAIIKVLGDDYVValnlapatpawlatl  116
              I  K+ +L    KG++L R+++ + QL A++ + K LGDDYVVALNLA +TP WL  +
Sbjct  61   AGIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNV  119

Query  117  saEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSVPYVNVRKTGNYGL  176
            +A PMKLGLDL GGVHFL+EVDMD A++       +++++ LR   V Y ++ + GN  +
Sbjct  120  GATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VI  178

Query  177  EIRFRDDKTRDEAVSYLTTRHRDMVINSS---GSNALTAVMSDERMREAREYAVQQNINI  233
            ++ F DD  R++A + +     D  I ++   G   L   ++  ++ E REY+++QN+  
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDATAA  293
            +RNRVN+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL      ++++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL------GAGP  292

Query  294  ANGRVPGDSEVKDTREG--QPVVLYKRVILTGDHITDSTSSNDEYNQPQVNISLDSAGGN  351
             +++  G +E+ + REG   +  + + +I+TGD++TD+ +S DE  +PQVNI+LD+ GG+
Sbjct  293  DDSK--GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  352  IMSNFTKDSVGKAMATLFVE------YK----DSGKKDANGRAILEKHEEVINVANIQSR  401
            +MS  T+ +VG++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQS 
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSP  409

Query  402  LGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEACLWGL  461
            LG+ FRITG+N   E+ +L+LLLRAG+L AP+ + EERTIGP++GA+NIT+G++A LWG+
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  462  IASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDAN  521
            +   +F++  Y+ FGL+AT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDAN
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDAN  528

Query  522  VLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAIT  581
            VLI  RI+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  582  TAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI  615
             ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

421) VPBB_0563 in NC_019955


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  397 bits (1492),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 296/616 (49%), Positives = 441/616 (72%), Gaps = 24/616 (3%)

Query  6    IITAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTTALDKEHLSHKSIALENGSI-  63
            ++ + +Y+ PN+Y +D+AIQ++GA  A  V  + +D  + AL    ++ K+ +L + +  
Sbjct  17   LVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKG  76

Query  64   -LVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLEAIGASPLKLGLDLRGGVHF  122
             L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL  +GA+P+KLGLDL GGVHF
Sbjct  77   GLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHF  136

Query  123  LMEVDMDAAMEKLVGQQEEAFRSELRDAKIRYRAIRPSGKEGVEVLLRDEEQLAEAKRTL  182
            L+EVDMD A++  +   E   ++ LR  K+RYR++   G + +++ + D+ +  +A+  +
Sbjct  137  LLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQLGFGDDAEREQARALV  195

Query  183  TKNHPDMNFVESDSNGRYALIATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQR  242
             K   D ++  ++ NG   L  ++T  +L EIR+Y++ QN+T +RNRVNELGVAEPLVQR
Sbjct  196  RKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQR  255

Query  243  QGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaangrapaGSEIKQDRDG  302
            QGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+ + + + +E+ + R+G
Sbjct  256  QGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAGPDDSKGTTEMFEFREG  307

Query  303  -RPVV-LKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATV  360
             RP   + + +I++G  +TDA +S DE GRPQVNI+LD++GG+ MS  ++ N+G+ MA +
Sbjct  308  GRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVI  367

Query  361  FAE------YKDSGRKTPEGKV---ILTKHEEVINQATIQSALGRNFRITGIDSAAEahn  411
            F E      Y     +  E  V    +  +  +I+ ATIQS+LG +FRITG+++ +E+ +
Sbjct  368  FIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSE  427

Query  412  lalllragaliaPISIVEERTIGPSMGQQNIDMGIQACVWGMVAVMLFTLLYYRGFGLIA  471
            LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V LF +  YR FGLIA
Sbjct  428  LALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIA  487

Query  472  NIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRSPQ  531
             +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF RIREE+ +G + Q
Sbjct  488  TVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQ  546

Query  532  QAIHQGYANAFStiadanittlitaiilfaVGTGAVKGFAVTLSIGILTSMFTAIIGTRC  591
            +AI +G+  A+++I DAN+TTL+ + ILFA+GTG+VKGFAVT+S+GI+TSMFTAI+ TR 
Sbjct  547  RAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRA  606

Query  592  IVNLLYGGKRVDKLSI  607
            +VNL+YGG+   KL I
Sbjct  607  MVNLIYGGRDFKKLWI  622

422) secD in NC_009778


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  397 bits (1495),  Expect = 6e-112, Method: Compositional matrix adjust.
 Identities = 286/631 (46%), Positives = 442/631 (71%), Gaps = 47/631 (7%)

Query  1    MLVAVLIVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQNTLQKEKISAKSVALE  59
            +++AVL+VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  ++L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMSTMGDQFVVALNLAPATPRWLTAISAEPMKLGLDLR  117
            E +   L R+   + QL A++ +  ++GD++VVALNLA +TP WL  ++A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNMDSL--RSDLREKGLSWTNVRKADNYGVTIQ--FR  170
            GGVHFL+EVDMD A++   K+ E ++ +L  +  +R ++L+        + G  IQ  F 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLP--------QLGNVIQLGFG  183

Query  171  DSDIRDAAVSYLTSRHRDMVISS---QGDNSLRAVMSDERLREAREYAVQQNINILRNRV  227
            D   R+ A + +     D  I++   +G   LR  ++  +L E REY+++QN+  +RNRV
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  228  NQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSSVDRSAAAAG--  285
            N+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  ++ D  +++    
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMFE  303

Query  286  -RVPGDSEVKMTREGQPVVLYKRVILTGDHITDSTSGVDQYNMPQVNISLDSAGGNIMSN  344
             R  G +   + R          +I+TGD++TD+ ++ D+   PQVNI+LD+ GG++MS 
Sbjct  304  FREGGRPAAAVERG---------LIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSR  354

Query  345  FTKDNIHKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQARLGQ  393
             T+ N+ ++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQ+ LG 
Sbjct  355  ATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGS  412

Query  394  NFVITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVS  453
            +F ITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A L G+   
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  454  ILFMILFYKKFGLIATTALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLI  513
             LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  514  NERIKEELSNGRSVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGI  573
              RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  574  GVATSMFTAIVGTRAIVNLLYGGKRINKLSI  604
            G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

423) secD in NC_017933


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  397 bits (1495),  Expect = 6e-112, Method: Compositional matrix adjust.
 Identities = 286/631 (46%), Positives = 442/631 (71%), Gaps = 47/631 (7%)

Query  1    MLVAVLIVGLLYALPNLYGEDPAVQITGAR-GVAASEQTLIQVQNTLQKEKISAKSVALE  59
            +++AVL+VG++Y+ PNLY +D+A+QI+GA  ++  ++  + +  ++L    I+ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   EGAI--LARFDSTDTQLRAREALMSTMGDQFVVALNLAPATPRWLTAISAEPMKLGLDLR  117
            E +   L R+   + QL A++ +  ++GD++VVALNLA +TP WL  ++A PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDTALG---KLQEQNMDSL--RSDLREKGLSWTNVRKADNYGVTIQ--FR  170
            GGVHFL+EVDMD A++   K+ E ++ +L  +  +R ++L+        + G  IQ  F 
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLP--------QLGNVIQLGFG  183

Query  171  DSDIRDAAVSYLTSRHRDMVISS---QGDNSLRAVMSDERLREAREYAVQQNINILRNRV  227
            D   R+ A + +     D  I++   +G   LR  ++  +L E REY+++QN+  +RNRV
Sbjct  184  DDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  228  NQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNSSVDRSAAAAG--  285
            N+LGVAEPLVQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL  ++ D  +++    
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMFE  303

Query  286  -RVPGDSEVKMTREGQPVVLYKRVILTGDHITDSTSGVDQYNMPQVNISLDSAGGNIMSN  344
             R  G +   + R          +I+TGD++TD+ ++ D+   PQVNI+LD+ GG++MS 
Sbjct  304  FREGGRPAAAVERG---------LIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSR  354

Query  345  FTKDNIHKPMATLFVE------YK----DSGKKDANGRSILVKQEE-VINVATIQARLGQ  393
             T+ N+ ++MA +F+E      Y     ++  KD   +++  K++  +I++ATIQ+ LG 
Sbjct  355  ATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTF--KEDKKIISLATIQSPLGS  412

Query  394  NFVITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVS  453
            +F ITG++   E+ +L+LLLRAG+L AP+ + EERTIGP+LG +NIT+G++A L G+   
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  454  ILFMILFYKKFGLIATTALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLI  513
             LF++ +Y+ FGLIAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANVLI
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLI  531

Query  514  NERIKEELSNGRSVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGI  573
              RI+EE++NG +VQ+AI EG+  A+++I+DAN+TTL+   IL+A+GTG++KGFA+T ++
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  574  GVATSMFTAIVGTRAIVNLLYGGKRINKLSI  604
            G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

424) Q7C_2363 in NC_017856


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  397 bits (1493),  Expect = 9e-112, Method: Compositional matrix adjust.
 Identities = 295/622 (48%), Positives = 443/622 (72%), Gaps = 23/622 (3%)

Query  1    MNRYPLWKNllllvvIATAVIYAMPNLYGDDPAVQISAGRQA-SLDNALVSNVETQLKEA  59
            +N+YPLWK +L+L V+  + IY+ PNLY DD+A+QIS++  A  + +A V      L +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   DLPYKGLTLEDNRL--LIRFADADSQLKAREMIAGSLAEQDYIVALNLAPTTPEWLTGLK  117
            ++P K+ +L +N    L+R++  + QL A++++  +L++ DY+VALNLA TTP+WL  + 
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGD-DYVVALNLARTTPNWLRNVG  120

Query  118  AEPMNLGLDLRGGVHFLMEVDMQAVQHQALTGIADDLRLLLRESVIRYTRVEVEGDTLFL  177
            A PM+LGLDL GGVHFL+EVDM+   +  L    ++++ LLR   +RY  +   G+ + L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  GFRDATERDKAEQEISRDYPDVVVSTDESADRPTLALNMTETFLRETQTLALQQNITTLR  237
            GF D +ER++A   + + + D  ++  E  + P L + +T + L E +  +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRINELGVAEPTVQQQGQNRIVVQLPGVQDTAQAKKILGATATLEFRLVDFESDVQSAVN  297
            NR+NELGVAEP VQ+QG NRIVV+LPGVQDTA+AK+ILG TA LEFRL        +A  
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------GAGP  292

Query  298  GRVPANSELFNHRDG--TPYLLNKRVMLTGENIINAASTLDAQTNSPAVSVTIDGKGARI  355
            +   + +E+F+ R+G   +  +++ +++TG+++ +A +++D +   P V++ +DG G+ +
Sbjct  293  DDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGEL  351

Query  356  FSNVTGDNIGNPMAVVFIESKSET----EVVAGEEVRVRKQ-FPE---IISVATIRDQLG  407
             S  T  N+G +MAV+FIE ++ T    ++V G E  V  Q F E   IIS+ATI+  LG
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  408  KKFQITGLDSTTEardlalllragalaaPIEIVEERTVGPSMGQENIDKGFKSVVIGLVL  467
             +F+ITGL++  E+ +LALLLRAG+LAAP+ + EERT+GPS+G +NI KG  + + G+++
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  468  VLVFMAVWYRVFGlvanlalavnlvllvallSMLQATLTMPGIAGIVLTVGMAVDANVLI  527
            V +F+   YR FGL+A +ALA N+V+L+AL+S+L ATLT+PGIAGIVLT+GMAVDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FERIREELHIGNSPQASIRAGYDKALSTIADANVTTLIAAVVLFGFGTGTIKGFAVTLSL  587
            F RIREE+  G + Q +I  G+D+A ++I DAN+TTL+ + +LF+ GTG +KGFAVT+SL
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIMGTRALVNLIYG  609
            GI+TSMFTAIM TRA+VNLIYG
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYG  613

425) Alvin_1199 in NC_013851


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  396 bits (1488),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 295/629 (47%), Positives = 446/629 (71%), Gaps = 23/629 (3%)

Query  1    MNRYPLWKNllilgvilvglllAWPNLYSQDPSIEITAAR-GHEIGAASSGEIKAALENA  59
            +N+YPLWK +LIL+V++VG++ + PNLY++D++I+I++A  + ++  A  +    AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   KVPLKGIESLEGGK--LLARFDTPGEQLRGQEAIERTLSERYRTALTQSADLPGWMRWLG  117
             +P+K+    E GK  LL R+    +QL +++ + ++L++ Y  AL  +   P W+R +G
Sbjct  62   GIPVKASSLAENGKGGLL-RLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  LNQMSLGLDLRGGIHVVIDVDMEAAIEQAVERYSGDLRTLLREDKIRYLTLTRDGTNILI  177
               M LGLDL GG+H +++VDM+ AI+  +  Y G++++LLR +K+RY +L + G  I +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  RFEDAASREAGEKKLKREFRELDFQPSEESGAFVLRAGLPETEQQKIKDFALQQNITTLR  237
             F D A RE +   +++ F ++++ P+E +G  VLR +L  +    I++++++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRVNALGVAEPSIARQGDRRIVVELPGAQDPGRLKDILGATATLEYRLVDTEGSVADAVA  297
            NRVN LGVAEP + RQG  RIVVELPG QD +  K ILG TA LE+RL    G+ +D   
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPDDSK  296

Query  298  GRPPVGSKLY-YERNGTPIL-LKRRVIVTGDQITDASAGFDSQSGSPAVFVNLDGQGARR  355
            G     + ++ +   G P   + R +I+TGDQ+TDA A+FD + G P V +NLDG+G+  
Sbjct  297  G----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGEL  351

Query  356  MRDVTTENVGKPMAVVFIENRTTT----QMVDGE----PVKTTRKVEEVISVATIREPFG  407
            M   T  NVG++MAV+FIE+R TT    QMV+G     PV+T +    +IS+ATI+ P+G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  408  RRFQTTGLDSSNEAHDTALLLRSGALAAPIEIVEERTIGPSLGQDNIDQglesvmlglgl  467
             +F+ TGL++  E+ + ALLLR+G+LAAP+ + EERTIGPSLG DNI +G+++ + G+ +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  468  vllFMAVYYRVFGlvanlalvvnlvltiavlSMLQATLTLPGIAGIVLTIGMAVDANVLI  527
            V LF+   YR FGL+A +AL  N+V+ +A++S+L ATLTLPGIAGIVLT+GMAVDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  YERIREEIRNGNSPQASIHAGYDKAFSTIVDANVTTLIAAVVLFSFGTGPVKGFAVTLFI  587
            + RIREEI NG + Q +I  G+D+A+++I+DAN+TTL+ + +LF+ GTGPVKGFAVT+ +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GIVTSMFTAILGSRALINLIYGGRRLNKL  616
            GI TSMFTAI+ +RA++NLIYGGR ++KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

426) secD in NC_006369


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  395 bits (1486),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 292/634 (47%), Positives = 449/634 (71%), Gaps = 30/634 (4%)

Query  1    MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKN  58
            M NKYPLWK ++++ + V+GF+Y+ PNLY +++ +QIS+++   + T++  ++    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   ANMDYKSLVVERDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIH  116
            A +  K+  +  +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  ADPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDK  173
            A PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  174  GIELRFRDSDSMENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTM  231
             I+L F D    E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q +
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPF  291
            + +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-  295

Query  292  IAKQTGVVPVNDKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGG  350
                 G   + +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G
Sbjct  296  ----KGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  351  ESLFTKVTRENIGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQN  402
              L ++ TR N+G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  ALGSNFQITGLTDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISLEVG  462
            +LGS+F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  463  MGLILALMLVYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDAN  522
            M ++  +++  Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvv  582
            VLI+ RIREE+ NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  lslglltsmltgITYTRAIVNWYYGGRNVKKLSI  616
            +SLG++TSM+T+I  TRA+VN  YGGR+ KKL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

427) VCLMA_A0655 in NC_017270


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  395 bits (1484),  Expect = 5e-111, Method: Compositional matrix adjust.
 Identities = 301/619 (49%), Positives = 444/619 (72%), Gaps = 21/619 (3%)

Query  1    MVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNKAQLSQKSIALE  59
            +++  + V+ +Y+ PN+Y +D+AIQI+GA  A  V  + +D  + AL  A ++ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPDWLESIGAAPMKLGLDLR  117
            + +   L+R++  + Q++A+D++  ALG D +VALNLA +TP+WL ++GA+PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLRDAEQLAQT  177
            GGVHFL+EVDMD A++  +   E   ++ LR EK+RYR++  L++ +++ + D  +  Q+
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGDDAEREQA  191

Query  178  KLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRVNELGVAEP  237
            + L+     D  +T +E +G  VL   +T A+L EIR+Y++ QN+T +RNRVNELGVAEP
Sbjct  192  RALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEP  251

Query  238  LVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaaagrapaGSEIKF  297
            LVQRQGA RIVVELPGVQDTA AK ILG TA LEFR       L+A++ +   +   + F
Sbjct  252  LVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LGAGPDDSKGTTEMFEF  304

Query  298  DRNGRP-VVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLM  356
               GRP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG+ MS  ++ N+G+ M
Sbjct  305  REGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSM  364

Query  357  ATVFAE------YKDSGKRSPEGKV---ILTKHEEVINQATIQSALGRNFRITGIDSPAE  407
            A +F E      Y      + E  V    +  +  +I+ ATIQS+LG +FRITG+++ +E
Sbjct  365  AVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGE  424

Query  408  ahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFG  467
            + +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V LF +  YR FG
Sbjct  425  SSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFG  484

Query  468  MIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVliferireelreGK  527
            +IA +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF RIREE+ +G 
Sbjct  485  LIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGM  543

Query  528  NPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIGILTSMFTAIVG  587
              Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+GI+TSMFTAI+ 
Sbjct  544  TVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMV  603

Query  588  TRCIVNLLYGGKRINKLSI  606
            TR +VNL+YGG+ ++KL I
Sbjct  604  TRAMVNLIYGGRDFKKLWI  622

428) secD in NC_007481


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  393 bits (1478),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 293/633 (47%), Positives = 454/633 (72%), Gaps = 25/633 (3%)

Query  1    MLNKFPLWKyllvlavvavgllyaSPNLYGRDPAIQVSGAKGA-DVDLSVIDKVNATLKK  59
            MLNK+PLWKY+L+LAV+ VG++Y++PNLY  D+AIQ+SGA  A +V  + +D+   +L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   HNVSVKSTKLEDGQI--LVRFRNVEEQLKAQDLLRNSLSDDYISAINMAPAQPAWLKAVG  117
              ++VK++ L +     L+R+ + E+QL A+D++R++L+DDY+ A+N+A + P WL+ VG
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEEDFRSDLREEKLRYRSVRRVAGSDRM  177
            + PMKLGLDLSGGVHF +E+DM  A+D +L   E + ++ LR EK+RYRS+ +++    +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV--I  178

Query  178  RVEMRSEEDKDAAERFLKTQYP-LNVYIDDSSNDNAFYATMSEQKLKEIRDYAIKQNETI  236
            ++    + +++ A  +++  +  +++   + +    +  +++  KL EIR+Y+IKQN T 
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  237  IRNRINQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEILGATATLEFREVEENADISAA  296
            +RNR+N++GVAEP VQRQGA+RI+V+LPG+QDTA AK ILG TA LEFR      D  ++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  297  AQGRIPPGTEMIMSRDG--YPVVLKKRIILEGSHITGAQSGSDEYQRPQVSITLDSKGGA  354
                    TEM+  R+G   +  + + +I+ G ++T+A+++ DE  RPQV+I LD+ GG 
Sbjct  299  --------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  355  KMNAFTKRAIGKRMATVFIEYKPSG---KKDADG--KALPPIKVEE---VINVATIQARL  406
             M+  T+  +G+ MA +FIE +P+    ++  +G  K +P     E   +I++ATIQ+ L
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  407  DRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEAGMTavalgfa  466
            +  FRITG++  +E+ +L+LLLRAG+L AP+ + EERT+GPSLG +NI  G+ A   G  
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  467  fvlafMLIYYKGFGMvanlalaanlvlIIGVMSLIPGATLTLPGIAGIVLTVGMAVDANV  526
            FV  F++  Y+ FG++A +ALA N+V+++++MSL+ GATLTLPGIAGIVLT+GMAVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  527  LIFERIREELADGRSPQQAVHFGYDSAFSTIFDANITTLIAAVILFAVGTGPIAGFAVTL  586
            LIF RIREE+A+G + Q+A+  G+D A+++I+DAN+TTL+ + ILFA+GTGP+ GFAVT+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  587  AIGILTSMFTAIVGTRAIINLFIGGKRVDKLSI  619
            ++GI+TSMFTAI+ TRA++NL+ GG+   KL I
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

429) secD in NC_003910


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  393 bits (1477),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 297/627 (48%), Positives = 459/627 (74%), Gaps = 21/627 (3%)

Query  1    MLNKYPLWKTLMVAMIVAIGALYATPMLYGESPAVQVSGLR-GVEANAATLDSIKAQLEE  59
            MLNKYPLWK +++  ++ +G +Y++P LY + +A+Q+SG   +++   A +D     L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   SNLSFASIAL-ENGQV-LTRFNNTEDQLKARDVLDDNLGKQFSVALNLTPNTPSWLAAIG  117
            + ++  + +L ENG+  L R+++ EDQL A+DV+   LG ++ VALNL+  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GKPMKLGLDLSGGVSFLMEVNMKEAINKAKIGMVSDFRGDLRNEKIRYRsvkevnnsvvv  177
            + PMKLGLDLSGGV FL+EV+M  AI+       ++ ++ LR+EK+RYRS+ ++ N + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  vFRKIEDLEAGQSLLKQRYRdlllstdddtltltAKM--TEPKLKEIREYALQQNITIIR  235
             F    + E +++L+++ + D+ ++  +       +M  T +KL EIREY+++QN+T +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  236  NRVNELGVAEPLVQRQGKKHIVIELPGVQDTAKAKEILNATATIEFRLVDTEGDLSNALN  295
            NRVNELGVAEPLVQRQG ++IV+ELPGVQDTA AK IL  TA +EFRL    +D      
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD------  294

Query  296  GRIPANSILLTDKDGRPSLLKKRIMLTGDHITDAKSGFDEYSRPQVNISLDSAGGSKMSS  355
            ++  ++ + + + +  ++ + + +++TGD++TDAK++FDE +RPQVNI+LD+ GG  MS 
Sbjct  295  SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSR  354

Query  356  GTKSNIGKPMATVFIEYKATDK------KDAEGNI---IFEKQQEIISVATIQSRLGKTF  406
            +T+SN+G++MA +FIE ++T        ++ E ++    F  ++ IIS+ATIQS LG  F
Sbjct  355  ATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQF  414

Query  407  RITGAGSAAEahnlalllragaliaPITIVEERTVGPTLGAENVRLGFEAILMGFGLVFI  466
            RITG  + +E+ +LALLLRAG+L AP+ + EERT+GP+LGA+N+  G +A L G  +V +
Sbjct  415  RITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSL  474

Query  467  FMMIYYRAFgvvanlalganlvlivgvMSMIPGATLTLPGMAGIVLTVGMAVDANVLife  526
            F+M  YR FG++A +AL+ N+V+++++MS++ GATLTLPG+AGIVLT+GMAVDANVLIF 
Sbjct  475  FIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFS  533

Query  527  rireeireGKTIQQSIHQGYDAAFSTIIDANITTLIAALILFAIGTGPVKGFAVTLSIGI  586
            RIREEI +G T+Q++I +G+D A+++I+DAN+TTL+ + ILFA+GTGPVKGFAVT+S+GI
Sbjct  534  RIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGI  593

Query  587  ITSMFTSVVGTRAVVNAIWGGKRLEKL  613
            +TSMFT+++ TRA+VN I GG+ + KL
Sbjct  594  FTSMFTAIMVTRAMVNLIYGGRDFKKL  620

430) secD in NC_011184


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  391 bits (1470),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 294/621 (48%), Positives = 449/621 (73%), Gaps = 24/621 (3%)

Query  1    MVVSVLLISALYALPNLYGEDPAVQITGSRGT-EVQTSTLDVVAENLKNNDIDYKSIAFE  59
            ++++VL+++ +Y+ PNLY +D+A+QI+G+  + +V  + +D  A  L + +I  K+ ++ 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGS--VLVRFNDTDSQISARDIINESLGKDYVVALNLAPLTPDWLTSIGAAPMKLGLDLR  117
            + +   L+R++  + Q++A+D++  +LG DYVVALNLA  TP+WL ++GA+PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDAAMSKLIGQQEESFRTDLREAKIRYRAIRDSGKDSVEVVLRSEEQLAE  177
            GGVHFL+EVDMD A+   +   E   ++ LR  K+RYR++ + G + +++ +  + +  +
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQLGFGDDAEREQ  190

Query  178  AKKVLSDAHRDMTFVESESNGQFKLIATFTEQRLQEIRNYAVEQNITIIRNRVNELGVAE  237
            A+ ++  +  D  +  +E NG   L  ++T  +L EIR+Y++ QN+T +RNRVNELGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  238  PLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaasgrapaGSEIK  297
            PLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+++ + + +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAGPDDSKGTTEMF  302

Query  298  EDRNG-RPVV-LKKRIILGGASITDASSSADEYGRPQVNISLDSEGGSKMTAFSRKNIGK  355
            E R+G RP   + + +I+ G  +TDA +S DE GRPQVNI+LD++GG  M+  +R N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  356  LMATVFTEYKDSG---RRTPEG--RVI----LSKTEEVINQATIQSALGRSFRITGIDSQ  406
             MA +F E + +    R+  +G  + +    +     +I+ ATIQS+LG  FRITG+++Q
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQ  422

Query  407  AEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMIFTLVYYRG  466
            +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V +F +  YR 
Sbjct  423  GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF  482

Query  467  FGlvanlalmanlvlIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRD  526
            FGL+A +AL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF RIREE+ +
Sbjct  483  FGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAN  541

Query  527  GRNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIGILTSMFTAI  586
            G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+GI+TSMFTAI
Sbjct  542  GMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAI  601

Query  587  VGTRCVINLVYGGKRVDKLSI  607
            + TR ++NL+YGG+   KL I
Sbjct  602  MVTRAMVNLIYGGRDFKKLWI  622

431) PARA_01430 in NC_015964


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  391 bits (1470),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 274/623 (44%), Positives = 440/623 (71%), Gaps = 30/623 (4%)

Query  1    MVILVVAIGALYSLPNIYGEDPAVQISGTRGQ-QADTTALTEVQNVLKENNLPTKSIVLE  59
            +++ V+ +G +YS PN+Y +D+A+QISG+    Q   + +    + L +  +P K+  L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LARFTNTDDQLLAKDKIAEKLGtnyttalnlapatpaWLSSIGANPMKWGLDLR  117
            + +   L R+++ +DQL AKD +   LG +Y  ALNLA +TP WL ++GA PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDMNSALAKRQEQLQDTLRNELRKEKIQFTAIKNGDKFGTTVTLENADQMSK  177
            GGV+FL+EVDM+ A+  R    ++ ++  LRKEK+++ ++ +   +G  + L  +D+  +
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQ---LGNVIQLGFGDDAER  188

Query  178  A-AR-IIRQLHPTLDVSDI---GDNTLNLALSEASLTESRNLAIEQNLTILRKRVAELGV  232
              AR ++R+    ++++     G   L +AL+ A L+E R+ +I QNLT +R+RV ELGV
Sbjct  189  EQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGV  248

Query  233  AEAVIQRQGAERIVIELPGVQDTARAKEILGATATLEFRIVNSLVNPESAARGMLPSDTE  292
            AE+++QRQGA+RIV+ELPGVQDTA AK ILG TA LEFR    L      ++G   +   
Sbjct  249  AEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR----LGAGPDDSKG---TTEM  301

Query  293  IKYDRQGRPVALYKRA-VLGGEHIINSSSGLDQNTSTPQVSVTLDSEGGEIMSQTTKKYY  351
            + +   GRP A   R+ ++ G+++ ++ +++D++ + PQV++ LD++GGE+MS++T+   
Sbjct  302  FEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELMSRATRSNV  360

Query  352  KKPMATLYVE------YKD---NGKKDENGKTILEKSEEVINVATIQGRFSSNFQITGVS  402
             ++MA +++E      Y     NG   +     +     +I++ATIQ+ ++S+F+ITG++
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  403  SSAEAQNLSMLLKSGALIAPVQIVEERTIGPSLGAQNVEQGIDASFWGLIAVIVFMLVYY  462
            + +E+ +L++LL++G+L AP+ + EERTIGPSLGA+N+ +G+DAS+WG++ V +F++  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  463  KVFGIIASFALVINIVLLVGLMSILPGATLTMPGIAGIVLTLGMSVDANVLIFERIKEEI  522
            + FG+IA+ AL +N+V+L++LMS+L GATLT+PGIAGIVLT+GM+VDANVLIF RI+EEI
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  523  RNGRPIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAVTLALGVAISMFT  582
             NG  +Q+AI+EG++ A+T+I+DANLTT+L + IL+A+GTGP++GFAVT++LG+  SMFT
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  583  AITGTRAIVNFLYGGKRLEKLSI  605
            AI  TRA+VN++YGG+ + KL I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

432) secD in NC_007484


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  390 bits (1466),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 299/631 (48%), Positives = 454/631 (72%), Gaps = 23/631 (3%)

Query  1    MNRYPLWKNllvvavvlvgilyavPNLFGDTPALQISATRGA-SLKPETLARVERLLQEQ  59
            +N+YPLWK +L++AV++VG++Y+ PNL+ D +A+QIS++  A  +    + R  + L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   GLDYQSVRLEDQRL--LVRLRRLETQLKAQDALRAELGSDYSIALHLSPATPDWLRAIGG  117
            G+  ++  L ++    L+RL + E QL A+D +R  LG DY +AL+L+ +TP+WLR +G+
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  118  LPMNLGLDLRGGVHFLMEVDMEAAVQQAEERYVEDLRSLLRENKIRYLSIGRLGAGGVEI  177
             PM+LGLDL GGVHFL+EVDM+ A++     Y  ++++LLR +K+RY S+ +LG   +++
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQL  180

Query  178  KFRNEQQREQAETLIHDEYFDLLLEPAEGERAPRLEIKLSEKEQREIQRLALQQNITTLR  237
             F ++ +REQA +L++  + D+ + PAE +  P L + L+     EI+  +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRINELGVAEPTIQQQGENRIVVQLPGVQDTARAKEILGATATLEFRLVDTSHDVQRAVE  297
            NR+NELGVAEP +Q+QG NRIVV+LPGVQDTA AK ILG TA LEFRL   ++D + + E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  298  GRVPVGSRLYHERGGA--PILLKKRVILTGDHVTDASSGIEQQGGSPAVFVSLDGQGARH  355
                    +++ R G+  +  + + +I+TGD+VTDA ++++++G  P V ++LDG+G+  
Sbjct  301  --------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVNINLDGHGGEL  351

Query  356  FSQVTGENIGKPMAVVFIETKSEIR--------MeegepvkvrrrvpevINVATIRDQLS  407
             S+ T  N+G++MAV+FIE ++           +E + PV+  +    +I++ATI+  L+
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  408  KRFQITGLDSTEEarnlalllragalaaPIDIVEERTIGPSLGQDNIDKGFQSVLIGFAL  467
             +F+ITGL++  E+ +LALLLRAG+LAAP+ + EERTIGPSLG DNI KG ++ L G  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  468  VLVFMALYYRVFGlvanlalaanlvlvvsllsMLQATLTLPGIAGIVLTVGMAVDANVLI  527
            V +F+   YR FGL+A +ALA N+V++++L+S+L ATLTLPGIAGIVLT+GMAVDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FERIREELRNGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTGPIKGFAVTLSL  587
            F RIREE+ NG + Q +I  G+  A ++I+DAN+TTL+ + +LF+ GTGP+KGFAVT+SL
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIVGTRAVINLIYGRRRKVKLSI  618
            GI+TSMFTAI+ TRA++NLIYG R   KL I
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

433) secD in NC_014125


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  390 bits (1467),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 293/634 (47%), Positives = 450/634 (71%), Gaps = 30/634 (4%)

Query  1    MQNKYPLWKNLMLIVIAVIGFIYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKN  58
            M NKYPLWK ++++ + V+GFIY+ PNLY +++ +QIS+++   + T++  ++    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   ANMDYKSLVVERDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIH  116
            A +  K+  +  +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  ADPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDK  173
            A PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  174  GIELRFRDSDSMENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTM  231
             I+L F D    E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q +
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPF  291
            + +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-  295

Query  292  IAKQTGVVPVNDKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGG  350
                 G   + +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G
Sbjct  296  ----KGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  351  ESLFTKVTRENIGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQN  402
              L ++ TR N+G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  ALGSNFQITGLTDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevg  462
            +LGS+F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  463  mglilvlmlvYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDAN  522
            M ++ ++++  Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvv  582
            VLI+ RIREE+ NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  lslglltsmltgITYTRAIVNWYYGGRNVKKLSI  616
            +SLG++TSM+T+I  TRA+VN  YGGR+ KKL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

434) lp12_1941 in NC_016811


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  390 bits (1468),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 292/634 (47%), Positives = 450/634 (71%), Gaps = 30/634 (4%)

Query  1    MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKN  58
            M NKYPLWK ++++ + V+GF+Y+ PNLY +++ +QIS+++   + T++  ++    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   ANMDYKSLVVERDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIH  116
            A +  K+  +  +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  ADPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDK  173
            A PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  174  GIELRFRDSDSMENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTM  231
             I+L F D    E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q +
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPF  291
            + +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-  295

Query  292  IAKQTGVVPVNDKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGG  350
                 G   + +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G
Sbjct  296  ----KGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  351  ESLFTKVTRENIGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQN  402
              L ++ TR N+G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  ALGSNFQITGLTDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevg  462
            +LGS+F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  463  mglilvlmlvYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDAN  522
            M ++ ++++  Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvv  582
            VLI+ RIREE+ NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  lslglltsmltgITYTRAIVNWYYGGRNVKKLSI  616
            +SLG++TSM+T+I  TRA+VN  YGGR+ KKL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

435) secD in NC_009494


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  390 bits (1467),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 293/634 (47%), Positives = 450/634 (71%), Gaps = 30/634 (4%)

Query  1    MQNKYPLWKNLMLIVIAVIGFIYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKN  58
            M NKYPLWK ++++ + V+GFIY+ PNLY +++ +QIS+++   + T++  ++    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   ANMDYKSLVVERDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIH  116
            A +  K+  +  +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  ADPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDK  173
            A PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  174  GIELRFRDSDSMENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTM  231
             I+L F D    E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q +
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPF  291
            + +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-  295

Query  292  IAKQTGVVPVNDKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGG  350
                 G   + +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G
Sbjct  296  ----KGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  351  ESLFTKVTRENIGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQN  402
              L ++ TR N+G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  ALGSNFQITGLTDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevg  462
            +LGS+F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  463  mglilvlmlvYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDAN  522
            M ++ ++++  Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvv  582
            VLI+ RIREE+ NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  lslglltsmltgITYTRAIVNWYYGGRNVKKLSI  616
            +SLG++TSM+T+I  TRA+VN  YGGR+ KKL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

436) secD in NC_006368


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  390 bits (1467),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 293/634 (47%), Positives = 450/634 (71%), Gaps = 30/634 (4%)

Query  1    MQNKYPLWKNLMLIVIAVIGFIYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKN  58
            M NKYPLWK ++++ + V+GFIY+ PNLY +++ +QIS+++   + T++  ++    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   ANMDYKSLVVERDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIH  116
            A +  K+  +  +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  ADPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDK  173
            A PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  174  GIELRFRDSDSMENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTM  231
             I+L F D    E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q +
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPF  291
            + +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-  295

Query  292  IAKQTGVVPVNDKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGG  350
                 G   + +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G
Sbjct  296  ----KGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  351  ESLFTKVTRENIGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQN  402
              L ++ TR N+G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  ALGSNFQITGLTDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevg  462
            +LGS+F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  463  mglilvlmlvYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDAN  522
            M ++ ++++  Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvv  582
            VLI+ RIREE+ NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  lslglltsmltgITYTRAIVNWYYGGRNVKKLSI  616
            +SLG++TSM+T+I  TRA+VN  YGGR+ KKL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

437) LPE509_01181 in NC_020521


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  390 bits (1468),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 292/634 (47%), Positives = 450/634 (71%), Gaps = 30/634 (4%)

Query  1    MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKN  58
            M NKYPLWK ++++ + V+GF+Y+ PNLY +++ +QIS+++   + T++  ++    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   ANMDYKSLVVERDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIH  116
            A +  K+  +  +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  ADPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDK  173
            A PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  174  GIELRFRDSDSMENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTM  231
             I+L F D    E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q +
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPF  291
            + +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-  295

Query  292  IAKQTGVVPVNDKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGG  350
                 G   + +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G
Sbjct  296  ----KGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  351  ESLFTKVTRENIGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQN  402
              L ++ TR N+G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  ALGSNFQITGLTDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevg  462
            +LGS+F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  463  mglilvlmlvYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDAN  522
            M ++ ++++  Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvv  582
            VLI+ RIREE+ NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  lslglltsmltgITYTRAIVNWYYGGRNVKKLSI  616
            +SLG++TSM+T+I  TRA+VN  YGGR+ KKL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

438) secD in NC_002942


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  390 bits (1468),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 292/634 (47%), Positives = 450/634 (71%), Gaps = 30/634 (4%)

Query  1    MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKN  58
            M NKYPLWK ++++ + V+GF+Y+ PNLY +++ +QIS+++   + T++  ++    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   ANMDYKSLVVERDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIH  116
            A +  K+  +  +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  ADPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDK  173
            A PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  174  GIELRFRDSDSMENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTM  231
             I+L F D    E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q +
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPF  291
            + +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-  295

Query  292  IAKQTGVVPVNDKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGG  350
                 G   + +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G
Sbjct  296  ----KGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  351  ESLFTKVTRENIGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQN  402
              L ++ TR N+G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  ALGSNFQITGLTDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevg  462
            +LGS+F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  463  mglilvlmlvYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDAN  522
            M ++ ++++  Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvv  582
            VLI+ RIREE+ NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  lslglltsmltgITYTRAIVNWYYGGRNVKKLSI  616
            +SLG++TSM+T+I  TRA+VN  YGGR+ KKL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

439) secD in NC_021350


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  390 bits (1468),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 292/634 (47%), Positives = 450/634 (71%), Gaps = 30/634 (4%)

Query  1    MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKN  58
            M NKYPLWK ++++ + V+GF+Y+ PNLY +++ +QIS+++   + T++  ++    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   ANMDYKSLVVERDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIH  116
            A +  K+  +  +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  ADPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDK  173
            A PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  174  GIELRFRDSDSMENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTM  231
             I+L F D    E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q +
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  SILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPF  291
            + +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-  295

Query  292  IAKQTGVVPVNDKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGG  350
                 G   + +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G
Sbjct  296  ----KGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  351  ESLFTKVTRENIGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQN  402
              L ++ TR N+G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  403  ALGSNFQITGLTDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevg  462
            +LGS+F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  463  mglilvlmlvYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDAN  522
            M ++ ++++  Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  523  VLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvv  582
            VLI+ RIREE+ NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  583  lslglltsmltgITYTRAIVNWYYGGRNVKKLSI  616
            +SLG++TSM+T+I  TRA+VN  YGGR+ KKL I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

440) VVMO6_02446 in NC_014965


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  388 bits (1460),  Expect = 4e-109, Method: Compositional matrix adjust.
 Identities = 299/621 (49%), Positives = 451/621 (73%), Gaps = 24/621 (3%)

Query  1    MVMFAIAIAALYALPNIYGEDPAIQVTGARGA-SVDMSTLDAVTNALNKENLSHKSIALE  59
            +++  + ++ +Y+ PN+Y +D+AIQ++GA  A  V  + +D  ++AL    ++ K+ +L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   NGSI--LVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLESIGAAPMKLGLDLR  117
            + +   L+R++  + Q++A+DV+  ALG D +VALNLA +TP+WL ++GA+PMKLGLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKIRYRSIRPVGSDAIEVLLRDGEELSQ  177
            GGVHFL+EVDMD A++  +   E+  ++ LR  K+RYRS+  +G + I++ + D+ E  Q
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQLGFGDDAEREQ  190

Query  178  AKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITILRNRVNELGVAE  237
            A+  + K   D  +  ++ +G   L  ++T ++L EIR+Y++ QN+T +RNRVNELGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  238  PLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVddkadlaaaasgrapaGSEIK  297
            PLVQRQGA+RIVVELPGVQDTA AK ILG TA LEFR         +A+++ + + +E+ 
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------LGAGPDDSKGTTEMF  302

Query  298  QDRN-GRP-VVLKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNKMAAFSKKNIGK  355
            + R+ GRP   + + +I++G  +TDA +S DE GRPQVNI+LD++GG+ M+  ++ N+G+
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGR  362

Query  356  LMATVFAE------YKDSGRKSPEGKV---ILTKHEEVINQATIQSALGRNFRITGIDSA  406
             MA +F E      Y     ++ E  V    +  +  +I+ ATIQS+LG +FRITG+++ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQ  422

Query  407  AEahnlalllragaliaPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRK  466
            +E+ +LALLLRAG+L AP+ + EERTIGPS+G +NI  G++A +WGM+ V LF +  YR 
Sbjct  423  GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF  482

Query  467  FGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFerireelre  526
            FGLIA VAL  N+V+++++MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF RIREE+ +
Sbjct  483  FGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAN  541

Query  527  grNPQQAIHQGYANAFStiadanittlitaiilfaVGTGAIKGFAVTLSIGILTSMFTAI  586
            G   Q+AI +G+  A+++I DAN+TTL+ + ILFA+GTG++KGFAVT+S+GI+TSMFTAI
Sbjct  542  GMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAI  601

Query  587  IGTRCIVNLLYGGKRINKLSI  607
            + TR +VNL+YGG+ ++KL I
Sbjct  602  MVTRAMVNLIYGGRDFKKLWI  622

441) ANH9381_2187 in NC_016513


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  388 bits (1458),  Expect = 5e-109, Method: Compositional matrix adjust.
 Identities = 272/621 (44%), Positives = 438/621 (71%), Gaps = 26/621 (4%)

Query  1    MVIFVVAIGILYALPNLYGEDPAVQISGTRGQ-EANSAVLSDVQSVLKDNNLTTKSIVLE  59
            +++ V+ +G++Y+ PNLY +D+A+QISG+    +   A +      L D  +  K+  L 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  60   SGSI--LVRFNNTDTQLLAKDKITEKLGTNYSVALNLAPATPKWLSSIGGNPMKWGLDLR  117
              +   L+R+++ + QL AKD +   LG +Y VALNLA +TP+WL ++G+ PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  118  GGVRFLMEVDMNSALSKRQEQLQDSLRTELRKEKYQYSAIKSIDNFSTGVTLTNSEQLSD  177
            GGV+FL+EVDM+ A+  R    ++ +++ LRKEK +Y ++  ++N    + + +  +  +
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN-VIQLGFGDDAEREQ  190

Query  178  VQRYLRKQHPNLDVS---VTSENTLSLGLSDSVLNEARESAIEQNLSILRKRVTELGVAE  234
             +  +RK   +++++   + +   L ++L+ + L E RE +I QNL+ +R+RV ELGVAE
Sbjct  191  ARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAE  250

Query  235  AVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRIVNASANLEAAARGMVPSDSEVK  294
            +++QRQGA+RIVVELPGVQDTA AK ILG TA LEFR+  ++ +    ++G   +     
Sbjct  251  PLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD----SKG---TTEMFE  303

Query  295  YDRNNRPVVLYKRA-VLGGEHITNASSGVDQNTSLPQVSVTLDSEGGEIMSQTTRLNLKK  353
            +    RP     R+ ++ G+++T+A ++ D++   PQV++ LD++GGE+MS++TR N+ +
Sbjct  304  FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGELMSRATRSNVGR  362

Query  354  PMATLYVE------YKD---SGKKDENGKTILQKHEEVINVATIQGRFGSQFQITGIDSP  404
            +MA +++E      Y     +G   +     ++ +  +I++ATIQ+ +GSQF+ITG+++ 
Sbjct  363  SMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQ  422

Query  405  AEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYRK  464
            +E+ +LA+LLR+G+L AP+ + EERTIGPSLGA+N+ +G++AS+WG+++V  F++  YR 
Sbjct  423  GESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF  482

Query  465  FgiianialianivllvgliSLLPGATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIRN  524
            FG+IA +AL  N+V+L++L+SLL GATLT+PGIAGIVL++GM+VDANVLIF RI+EEI N
Sbjct  483  FGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAN  541

Query  525  GRPIQQAINEGYSGAFSSIFDANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAI  584
            G  +Q+AI+EG+  A+++I+DANLTT+L +  L+A+GTGP+KGFA+T+SLGI  SMFTAI
Sbjct  542  GMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAI  601

Query  585  TGTRAIVNFLYGGKRIDKLSI  605
              TRA+VN++YGG+ + KL I
Sbjct  602  MVTRAMVNLIYGGRDFKKLWI  622

442) secD in NC_014306


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  387 bits (1454),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 300/636 (48%), Positives = 457/636 (72%), Gaps = 35/636 (5%)

Query  1    MLNRYPLWKyimlivvllggllyalpnlygEDPAVQITGARGS-AASEQTLVQIQDALKQ  59
            MLN+YPLWKY++++ VL+ G++Y+ PNLY +D+A+QI+GA  +   ++  + +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNIQSKSIALENGAI--LARFANGDVQLRARDAITKVLGEDFVValnlapatptwltlla  117
              I  K+ +L + +   L R+++ + QL A+D + K LG+D+VVALNLA +TP WL  ++
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  aepMKLGLDLRGGVHFLMEVDMDTALG---KLQEQNIDNLRSDLRDKNIPYTNVRKTDNY  174
            A PMKLGLDL GGVHFL+EVDMD A++   K+ E ++  L   LR  ++ Y ++ + +N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-  176

Query  175  GLEIRFRDAASRDAAVSYLSDRHRDLVISGT---SGNTLRAVMTDDRLREAREYAVQQNI  231
             +++ F D A R+ A + +     D+ I+ +   +   LR  +T  +L E REY+++QN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  232  NILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTTVDPT  291
              +RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL     D+ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  292  AAANGRVPGDSEVKNTRDG-QPVTLYKR-VILTGDHITDSTSSQDEYNQAQVNISLDSAG  349
                    G +E+ + R+G +P +   R +I+TGD++TD+ +S DE  ++QVNI+LD+ G
Sbjct  297  --------GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  350  GNIMSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAILAKQEEVINVANIQ  399
            G++MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++A IQ
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQ  407

Query  400  SRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEACLW  459
            S LG+ FRITG++   E+ +L+LLLRAG+L AP+ + EERTIGP++GA+NIT+G++A LW
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  460  GLIASIVFMVVYYRKFGVIATSALVANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVD  519
            G++   +F++  YR FG+IAT AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVD
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVD  526

Query  520  ANVLINERIKEEIKNGRSIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVGTGSIKGFA  579
            ANVLI  RI+EEI NG ++Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  580  ITTAIGVVTSMFTAIVGTRALVNLLYGGKRITKLSI  615
            +T ++G+ TSMFTAI+ TRA+VNL+YGG+ + KL I
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

443) secD in NC_016808


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  387 bits (1457),  Expect = 7e-109, Method: Compositional matrix adjust.
 Identities = 285/622 (46%), Positives = 443/622 (72%), Gaps = 28/622 (4%)

Query  1    MVILVIAIGVLYSLPNLYGEDPAVQISGTRG--QEANAQIFSEVQTLLNQNNLETKSIIL  58
            +++ V+ +G +YS PNLY +D+A+QISG+    Q ++A++       L +  +  K+  L
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADV-DRAAKALTDAGIPVKASSL  70

Query  59   ENGSI--LARFHNTDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSVGAYPMKWGLDL  116
             + +   L R+ + +DQL AKD +   LG++Y VALNLA +TP+WL +VGA PMK GLDL
Sbjct  71   AENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDL  130

Query  117  RGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRKEKYQYTGIKSAENFSTLVTLLKPEQLD  176
             GGV+FL+EVDM  A++ R    ++++++ LRKEK +Y ++    N   L  +    + +
Sbjct  131  SGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL-GFGDDAERE  189

Query  177  EVQRFLRKQHHNLEIKSV---SDNTLALTLSEAALNESRESAIEQNLTILRKRVSELGVS  233
            + + ++RK   ++EI +    +   L ++L+ A L E RE +I QNLT +R+RV+ELGV+
Sbjct  190  QARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVA  249

Query  234  EAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSATRGFVPNDSEV  293
            E+++QRQGA+RIVVELPGVQDTA AK ILG TA LEFRL     +  ++T  F       
Sbjct  250  EPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMF-------  302

Query  294  KLDRNGRPVVLYKRA-VLGGEHITNASSGLDQQTSRPQVSVTLDSEGGEIMSQATRLNLK  352
             +   GRP     R+ ++ G+++T+A +++D++ +RPQV++ LD++GGE+MS+ATR N+ 
Sbjct  303  EFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELMSRATRSNVG  361

Query  353  KPMATLYVE------YKD---SGKKDENGKAILEKHEEVINVATIQGRFGSQFQITGIDS  403
            ++MA +++E      Y     +G   +     +  +  +I++ATIQ+ +GSQF+ITG+++
Sbjct  362  RSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNG  421

Query  404  PAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYR  463
             +E+ +LA+LLR+G+L AP+ + EERTIGPSLGA+N+ +G++AS+WG+L V +F+   YR
Sbjct  422  QGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYR  481

Query  464  KFglianialianivlvvglMSLLPGATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIR  523
             FGLIA +AL  N+V++++LMSLL GATL++PGIAGIVL++GM++DANVLIF RI+EEI 
Sbjct  482  FFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  524  NGRPIQQAIHEGYSGAFTSIFDANLTTILTSVILYAVGAGPVKGFAITLALGVGISMFTA  583
            NG  +Q+AI EG+  A+T+I+DANLTT+L + IL+A+G+GPVKGFA+T++LG+  SMFTA
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  584  IVGTRAIVNFLYGGKRINKLSI  605
            I+ TRA+VN++YGG+ ++KL I
Sbjct  601  IMVTRAMVNLIYGGRDFKKLWI  622

444) Rmag_1006 in NC_008610


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  386 bits (1453),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 283/632 (45%), Positives = 449/632 (72%), Gaps = 28/632 (4%)

Query  1    MNHYSRLKNALIIFVLLLSMLYALPNIFGSDLAVQVSSVGNTLIVDQ-DLNKIKNVLKAQ  59
            +N Y+  K  LI+ VL+++ +Y+ PN++  D A+Q+S+ + +L V Q D+++  + L   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   QIEFKSVELTNQRI--LVRFKDNTQQLLAKDVLKQALGRRYVVALNLAPSVPVWLTILGG  117
             I  K+  L+++    L+R+  + +QL AKDV+++ALG  YVVALNLA + P WL  +G+
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  118  KAMSLGLDLRGGVYFLLEVDMETVISALMNKVYN-ELRVLLRKDRL-YKSIKQENGSIVI  175
             +M LGLDL GGV FLLEVDM+  I A + KVY+ E++ LLRK+++ Y+S+ Q    I +
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARL-KVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  176  RFKHAELKDKAAQLIKLELGDLVMLDNNSDELS-LNIGISESAQRQAKKSALKQNITTLR  234
             F +   +++A  L++  + D+ +   + + ++ L ++++ +   + +  ++KQN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNELGVTEPIIQ-QSSERIMVQLPGVQDTARAKEILGTVATLEFRLVDEKNDPQIAIQ  293
            NRVNELGV+EP++Q Q+++RI+V+LPGVQDTA AK ILG  A LEFRL    +D++ + +
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  294  SGRVPIGSKLYYFKDGS-PLLLKDR-VITTGENITGAASSIDQENNIPMVNITLDSIGGR  351
                     ++ F++G+ P    +R +I TG+++T+A +S+D++   P VNI LD+ GG 
Sbjct  301  ---------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGE  350

Query  352  AMLNTTKKYLHHRMAVVFIENKVETI--------IKNGKTIKKHTTTRDIINAATIQSAF  403
             M  +T+  + + MAV+FIE++  T         + ++  ++     + II+ ATIQS++
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  404  SSRFQITGIDsarearnlalllragslsaPIEIIEERTIGPSLGADNITKGMTSvlvgfv  463
            +S+F+ITG+++  E+ +LALLLRAG+L+AP+ + EERTIGPSLGADNITKG+ + L G +
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  464  lvllfMAIRYRIFGIVANVALTFNLVMIVSVLSLLQATLTLPGIAGIVLTVGMAVDANVL  523
            +V LF+   YR+FG++A VAL+FN+VM+++++SLL ATLTLPGIAGIVLT+GMAVDANVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  524  IFERIKEELCVNSKIQKAISNGYDKALLTIADANITTLIAALVLFSFGTGPIKGFAITLS  583
            IF RI+EE+     +Q+AIS+G+D+A  +I DAN+TTL+ + +LF+ GTGP+KGFA+T+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  584  IGIVTSMFTAIIVSRAIINKIYGGKKLEEISI  615
            +GI TSMFTAI+V+RA++N IYGG+ +  + I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

445) secD in NC_009727


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  386 bits (1452),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 270/634 (43%), Positives = 446/634 (71%), Gaps = 36/634 (5%)

Query  1    MNRYPLWRyillavliiisliyalPNLYGEDPAIQISAKNSAPIEAVEEKIKSTLNAQHI  60
            +N+YPLW+Y+L+  ++++++IY+ PNLY +D+AIQIS+  S++++  +  +  + +A   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISG-ASTALQVTQADVDRAAKALTD  60

Query  61   SYLSVRPV-----DNTVLVRFPSTEDQLKAQDVIQAVVGTDYSVALNLAPRTPRWLQAIG  115
            + ++V++      ++  L+R++  EDQL A+DV++  +G DY VALNLA  TP WL+ +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  116  AKPMRLGLDLRGGIHFLLDVDVGAMVKAQET---GDLHTMSTALREARIRYTEMSSDQNG  172
            A PM+LGLDL GG+HFLL+VD++  + A+     G++ ++   LR  ++RY  ++   N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGNV  177

Query  173  VMIHFRDQAARDQARTLLEKQFPDYRFEATA----SSLRGTISITALHQIQQNAVDQITT  228
            + + F D+A R+QAR+L+ K F D+ + ++     + LR +++ + L +I++ ++ Q  T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  229  ILRNRVNELGVAEPVIQQQGESQISVDLPGIQDTARAKDIIGKVATIRLQLVDVEHDAET  288
             +RNRVNELGVAEP++Q+QG ++I V+LPG+QDTA AK I+GK A + ++L     +A  
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-----GAGP  292

Query  289  ASSTGTVPFGSKLYTF---EKQPVLLKQQVVLKGTSIINASSVIGEDGRPAVRVRVSGSD  345
              S GT    + ++ F    + +  + + +++ G  + +A + ++E+GRP V + + G +
Sbjct  293  DDSKGT----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  346  VPSFNRITGENVGKPLAVVYVETQTT----RHLVDG--KVVTQH--RQIERIINIATIQT  397
                +R T  NVG+++AV+++E + T    R++V+G  K V  +  ++  +II++ATIQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  398  ALGNDFQITNLSTMDYAKNLALLLRSGAYPVPVDFVQERVVGPSLGQENIHMGVLSTEIG  457
            +LG++F+IT L+  + + +LALLLR+G+ + P+ F +ER +GPSLG +NI  GV ++  G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  458  ALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLPGIAGIVLTVGMAVDAN  517
             L+V +F+   YR+FG+IA +ALA+N+V ++A++S+LGATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  518  VLINERIREELRNGMSTQASIKAGYDRAFATIVDANVTTLIVMIILFALGSGPVQGFAVT  577
            VLI  RIREE+ NGM+ Q +I  G+DRA+++I+DAN+TTL+V  ILFA+G+GPV+GFAVT
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  578  TTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSI  611
             ++G+++SM TAI  TRA+VNL+YG R   +L I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

446) secD in NC_013722


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  385 bits (1448),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 274/631 (44%), Positives = 434/631 (69%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYVLILIVLGLSALYALPNVYQKDPSVQITASRGG-KLDDALRERVLADLKA  58
            ML+ +P WKYVLIL VL ++ +Y+ PN+Y  D+++QI+++  + ++ +A  +R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPK--SVANEGDSLMVRLPTLQAQTRANDILREQVGENYTVALNLASTVPGWLSKLG  116
            AGI  K  S+A++G + ++RL+  + Q  A+D++R  +G++Y VALNLA T P WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GKPMVLGLDLVGGVHFALQVDQKAALEKRLDAFAEDLRTTLRDNRIPYRSVERRPDNSIQ  176
            + PM LGLDL GGVHF L+VD   A++ RL  +  ++++ LR +++ YRS+   P+ +  
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL---PQLGNV  177

Query  177  ANLGEGadasaarallakaQPTLSYAVSGQTIA------VTVPDAELKQIAAGAIEQNLT  230
             +LG G DA   +A     +    + ++   +       +++  A L +I   +I QNLT
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNQLGVAEPIIQRQGEDRIVVELPGVQDTAEAKRMIGATATLEFRGVVDGNAEDA  290
            T+RNRVN+LGVAEP++QRQG +RIVVELPGVQDTAEAKR++G TA LEFR  +++ ++D+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPAEAKVY-YRRDNGAPVLLNKRVLVSGDQMVNASVSIDQNGLPAVAVTLNNVAG  349
                   + + ++ +R +  ++  +++ ++++GDQ+ +A  S+D++G P V + L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANTGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEEA--LAPTRIAGV  401
            + M   T +N G+ M+V++IE+ PT T    MV+G  K+V     KE+   ++ + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFQTTGLE-KTEAENLAKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGITAVVYAF  460
            +G +F+ TGL+ + E+ +LA LLRAG+LAAPM F EE  IGPSLGA+N+ +G+ A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFGVYYRMFGAITSVALLMNLLIVVSVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL  N+++++++MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPPKSAIASGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+VG  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  IIGIFASMFTAITVSRALAVLIYGRR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

447) secD in NC_011528


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  385 bits (1449),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 270/634 (43%), Positives = 446/634 (71%), Gaps = 36/634 (5%)

Query  1    MNRYPLWRyillavliiisliyalPNLYGEDPAIQISAKNSAPIEAVEEKIKSTLNAQHI  60
            +N+YPLW+Y+L+  ++++++IY+ PNLY +D+AIQIS+  S++++  +  +  + +A   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISG-ASTALQVTQADVDRAAKALTD  60

Query  61   SYLSVRPV-----DNTVLVRFPSTEDQLKAQDVIQAVVGTDYSVALNLAPRTPRWLQAIG  115
            + ++V++      ++  L+R++  EDQL A+DV++  +G DY VALNLA  TP WL+ +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  116  AKPMRLGLDLRGGIHFLLDVDVGAMVKAQET---GDLHTMSTALREARIRYTEMSSDQNG  172
            A PM+LGLDL GG+HFLL+VD++  + A+     G++ ++   LR  ++RY  ++   N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGNV  177

Query  173  VMIHFRDQAARDQARTLLEKQFPDYRFEATA----SSLRGTISITALHQIQQNAVDQITT  228
            + + F D+A R+QAR+L+ K F D+ + ++     + LR +++ + L +I++ ++ Q  T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  229  ILRNRVNELGVAEPVIQQQGESQISVDLPGIQDTARAKDIIGKVATIRLQLVDVEHDAET  288
             +RNRVNELGVAEP++Q+QG ++I V+LPG+QDTA AK I+GK A + ++L     +A  
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-----GAGP  292

Query  289  ASSTGTVPFGSKLYTF---EKQPVLLKQQVVLKGTSIINASSVIGEDGRPAVRVRVSGSD  345
              S GT    + ++ F    + +  + + +++ G  + +A + ++E+GRP V + + G +
Sbjct  293  DDSKGT----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  346  VPSFNRITGENVGKPLAVVYVETQTT----RHLVDG--KVVTQH--RQIERIINIATIQT  397
                +R T  NVG+++AV+++E + T    R++V+G  K V  +  ++  +II++ATIQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  398  ALGNDFQITNLSTMDYAKNLALLLRSGAYPVPVDFVQERVVGPSLGQENIHMGVLSTEIG  457
            +LG++F+IT L+  + + +LALLLR+G+ + P+ F +ER +GPSLG +NI  GV ++  G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  458  ALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLPGIAGIVLTVGMAVDAN  517
             L+V +F+   YR+FG+IA +ALA+N+V ++A++S+LGATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  518  VLINERIREELRNGMSPQASIKAGYDRAFATIVDANVTTLIVMIILFALGSGPVQGFAVT  577
            VLI  RIREE+ NGM+ Q +I  G+DRA+++I+DAN+TTL+V  ILFA+G+GPV+GFAVT
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  578  TTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSI  611
             ++G+++SM TAI  TRA+VNL+YG R   +L I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

448) secD in NC_010117


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  385 bits (1449),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 270/634 (43%), Positives = 446/634 (71%), Gaps = 36/634 (5%)

Query  1    MNRYPLWRyillavliiisliyalPNLYGEDPAIQISAKNSAPIEAVEEKIKSTLNAQHI  60
            +N+YPLW+Y+L+  ++++++IY+ PNLY +D+AIQIS+  S++++  +  +  + +A   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISG-ASTALQVTQADVDRAAKALTD  60

Query  61   SYLSVRPV-----DNTVLVRFPSTEDQLKAQDVIQAVVGTDYSVALNLAPRTPRWLQAIG  115
            + ++V++      ++  L+R++  EDQL A+DV++  +G DY VALNLA  TP WL+ +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  116  AKPMRLGLDLRGGIHFLLDVDVGAMVKAQET---GDLHTMSTALREARIRYTEMSSDQNG  172
            A PM+LGLDL GG+HFLL+VD++  + A+     G++ ++   LR  ++RY  ++   N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGNV  177

Query  173  VMIHFRDQAARDQARTLLEKQFPDYRFEATA----SSLRGTISITALHQIQQNAVDQITT  228
            + + F D+A R+QAR+L+ K F D+ + ++     + LR +++ + L +I++ ++ Q  T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  229  ILRNRVNELGVAEPVIQQQGESQISVDLPGIQDTARAKDIIGKVATIRLQLVDVEHDAET  288
             +RNRVNELGVAEP++Q+QG ++I V+LPG+QDTA AK I+GK A + ++L     +A  
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-----GAGP  292

Query  289  ASSTGTVPFGSKLYTF---EKQPVLLKQQVVLKGTSIINASSVIGEDGRPAVRVRVSGSD  345
              S GT    + ++ F    + +  + + +++ G  + +A + ++E+GRP V + + G +
Sbjct  293  DDSKGT----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  346  VPSFNRITGENVGKPLAVVYVETQTT----RHLVDG--KVVTQH--RQIERIINIATIQT  397
                +R T  NVG+++AV+++E + T    R++V+G  K V  +  ++  +II++ATIQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  398  ALGNDFQITNLSTMDYAKNLALLLRSGAYPVPVDFVQERVVGPSLGQENIHMGVLSTEIG  457
            +LG++F+IT L+  + + +LALLLR+G+ + P+ F +ER +GPSLG +NI  GV ++  G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  458  ALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLPGIAGIVLTVGMAVDAN  517
             L+V +F+   YR+FG+IA +ALA+N+V ++A++S+LGATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  518  VLINERIREELRNGMSPQASIKAGYDRAFATIVDANVTTLIVMIILFALGSGPVQGFAVT  577
            VLI  RIREE+ NGM+ Q +I  G+DRA+++I+DAN+TTL+V  ILFA+G+GPV+GFAVT
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  578  TTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSI  611
             ++G+++SM TAI  TRA+VNL+YG R   +L I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

449) secD in NC_006834


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  384 bits (1444),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 281/631 (45%), Positives = 436/631 (70%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNIYQKDPSVQITASRGA-QLDDALRSRIDADLKA  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPKA--VTKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIAYRSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VSLGEGADADAARVTLAKAQPTLTYDVSGQNIA------VKVPEAELKQIASGAIEQNLT  230
            +++G++A+ + AR  + K+     ++++  ++       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNAEDA  290
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ ++D+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPPEAKVYRVRDTGAPVLLNKRALV-TGDQMVSASVSNDQNGMPAVAVTLNNVAG  349
                     + ++  R+ G P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALPATRIAGV  401
            + M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   ++ + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFQTTGLE-KTEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  460
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  MIGIFASMFTAITVSRALAVLIYGSR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

450) secD in NC_007705


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  384 bits (1444),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 281/631 (45%), Positives = 436/631 (70%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNIYQKDPSVQITASRGA-QLDDALRSRIDADLKA  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPKA--VTKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIAYRSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VSLGEGADADAARVTLAKAQPTLTYDVSGQNIA------VKVPEAELKQIASGAIEQNLT  230
            +++G++A+ + AR  + K+     ++++  ++       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNAEDA  290
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ ++D+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPPEAKVYRVRDTGAPVLLNKRALV-TGDQMVSASVSNDQNGMPAVAVTLNNVAG  349
                     + ++  R+ G P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALPATRIAGV  401
            + M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   ++ + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFQTTGLE-KTEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  460
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  MIGIFASMFTAITVSRALAVLIYGSR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

451) secD in NC_008789


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  384 bits (1443),  Expect = 8e-108, Method: Compositional matrix adjust.
 Identities = 291/632 (47%), Positives = 447/632 (71%), Gaps = 29/632 (4%)

Query  1    MNRYPLWKYllvvavlvvgglfalPNLFGEDPSVVITTGDD--EVPSEEVQSDVLGFLEE  58
            +N+YPLWKY+L++AVLVVG +++ PNL+ +D+++ I+ +    +V   +V+    + L +
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKA-LTD  60

Query  59   EGY----KPLSAEVLEGQWVLRYGSTDEQMRASDLISAKLDREYSVAMTLVPATPQWLRA  114
             G      +L+ +   G  +LR +  ++Q+ A D++   L+ +Y VA+ L  +TP+WLR 
Sbjct  61   AGIPVKASSLAENGKGG--LLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRN  118

Query  115  MGAEPMFLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREERIRFSALEVTDEQQ  174
            +GA PM LGLDL GGVHFLL+VD+D  ++  +   + ++++L+R E++R+ +L   ++  
Sbjct  119  VGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-  177

Query  175  IRMAFADTDLRARALEALEEHIEGLNYSEEEDEDTYTLIASMDEEELQEMKDLAVQQNIT  234
            I+++F+D   R +A   +   + +++ +  E ++   L  ++    L E+++ +++QN+T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  235  TLRNRVDELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILGATATLEFRFVDHANFPFT  294
            T+RNRV+ELGVAEP++QRQGA+RIVV+LPG+QD ++AK ILG TA LEFR+         
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------G  289

Query  295  GDPDDPPEGSEVFPQRDGG--YVALERQRILSGDRIIDASSGFDQESGSPEVNIRLSGTG  352
            ++PDD+   +E+F  R+GG    A+ER  I++GD++ DA ++FD++ G P+VNI L G G
Sbjct  290  AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  353  GRIMNRATRDRVGDHMAVLFQERISET----QMVDGE----PERVIRELEEVISVARIRE  404
            G +M+RATR  VG  MAV+F E+ + T    QMV+G     P + ++E   +IS+A I+ 
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  405  GLGSRFRITGLDSSQEASNlalllragalaaPIDIVEERTIGPSLGAENVERGFMAVVIG  464
             LGS+FRITGL++  E+S+LALLLRAG+LAAP+ + EERTIGPSLGA+N+ +G  A + G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  465  FLLVIAFMALYYRTFGlvanlallsnlviivavlsMLQATLTLPGIAGIVLTVGMAVDAN  524
             L+V  F+   YR FGL+A +AL  N+V+++A++S+L ATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  525  VLIFQRIREELKAGAPIQTAIDAGYGKALSTIADANVTTLIAALVLFLFGTGPVQGFAVT  584
            VLIF RIREE+  G  +Q AI  G+++A ++I DAN+TTL+ + +LF  GTGPV+GFAVT
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  585  LAIGLATSMFTAIVGTRAVINLIYGGRKVSEL  616
            +++G+ TSMFTAI+ TRA++NLIYGGR    L
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

452) secD in NC_016010


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  384 bits (1444),  Expect = 8e-108, Method: Compositional matrix adjust.
 Identities = 282/631 (45%), Positives = 436/631 (70%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDGELKS  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPKA--ITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VNLGEGANADAARVTLAKAQPTLTYDVSGQNIA------VKVPEAELKQIASGAIEQNLT  230
            + +G++A+ + AR  + K+     ++++  ++       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDA  290
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ +DD+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPPEAKVYRLRDSNAPVLLNKRALV-TGDQMVSASVSTDQNGMPAVAVTLNNVAG  349
                     + ++ +R++  P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALSPTRIAGV  401
            + M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   +S + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFQTTGLE-KTEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  460
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  MIGIFASMFTAITVSRALAVLIYGSR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

453) secD in NC_007508


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  384 bits (1443),  Expect = 8e-108, Method: Compositional matrix adjust.
 Identities = 282/631 (45%), Positives = 436/631 (70%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDGELKS  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITQKA--ITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VNLGEGANADAARVTLAKAQPTLTYDVSGQNIA------VKVPEAELKQIASGAIEQNLT  230
            + +G++A+ + AR  + K+     ++++  ++       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDA  290
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ +DD+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPPEAKVYRLRDSNAPVLLNKRALV-TGDQMVSASVSTDQNGMPAVAVTLNNVAG  349
                     + ++ +R++  P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALSPTRIAGV  401
            + M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   +S + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFQTTGLE-KTEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  460
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  MIGIFASMFTAITVSRALAVLIYGSR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

454) secD in NC_011527


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  384 bits (1444),  Expect = 8e-108, Method: Compositional matrix adjust.
 Identities = 266/634 (42%), Positives = 444/634 (71%), Gaps = 36/634 (5%)

Query  1    MNRYPLWRyillavliiisliyalPNLYGEDPAIQISAKNSAPIEAVEEKIKSTLNAQHI  60
            +N+YPLW+Y+L+  ++++++IY+ PNLY +D+AIQIS+  S++++  +  +  + +A   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISG-ASTALQVTQADVDRAAKALTD  60

Query  61   SYLSVRPV-----DNTVLVRFPSTEDQLKAQDVIQAVVGTDYSVALNLAPRTPRWLQAIG  115
            + ++V++      ++  L+R++  EDQL A+DV++  +G DY VALNLA  TP WL+ +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  116  AKPMRLGLDLRGGIHFLLDVDVGAMVKAQET---GDLHTMSTALREARIRYTEMSSDQNG  172
            A PM+LGLDL GG+HFLL+VD++  + A+     G++ ++   LR  ++RY  ++   N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGNV  177

Query  173  VMIHFREQAARDQARTLLEKQFPDYRFEATA----SSLRGTISITALHQIQQNAVDQITT  228
            + + F ++A R+QAR+L+ K F D+ + ++     + LR +++ + L +I++ ++ Q  T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  229  ILRNRVNELGVAEPVIQQQGESQISVDLPGIQDTARAKDIIGKVATIRLQLVDVEHDAET  288
             +RNRVNELGVAEP++Q+QG ++I V+LPG+QDTA AK I+GK A + ++L    +D+  
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  289  ASSTGTVPFGSKLYTF---EKQPVLLKQQVVLKGTSIINASSVIGEDGRPAVRVRVSGSD  345
            ++          ++ F    + +  + + +++ G  + +A + ++E+GRP V + + G +
Sbjct  298  TTE---------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  346  VPSFNRITGENVGKPLAVVYVETQTT----RHLVDG--KVVTQHC--QIERIINIATIQT  397
                +R T  NVG+++AV+++E + T    R++V+G  K V  +   +  +II++ATIQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  398  ALGNDFQITNLSTMDYGKNLALLLRSGAYPVPVDFVQERVVGPSLGQENIHMGVLSTEIG  457
            +LG++F+IT L+  + + +LALLLR+G+ + P+ F +ER +GPSLG +NI  GV ++  G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  458  ALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLPGIAGIVLTVGMAVDAN  517
             L+V +F+   YR+FG+IA +ALA+N+V ++A++S+LGATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  518  VLINERIREELRNGMSPQASIKAGYDRAFATIVDANVTTLIVMIILFALGSGPVQGFAVT  577
            VLI  RIREE+ NGM+ Q +I  G+DRA+++I+DAN+TTL+V  ILFA+G+GPV+GFAVT
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  578  TTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSI  611
             ++G+++SM TAI  TRA+VNL+YG R   +L I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

455) secD in NC_010717


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  383 bits (1439),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 280/631 (45%), Positives = 436/631 (70%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNIYQKDPSVQITASRGA-QLDDALRSRIDADLKA  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPKA--VTKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIAYHSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ Y+S+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VSLGEGADADAARVTLAKAQPTLTYDVSGQNIA------VKVPEAELKQIASGAIEQNLT  230
            +++G++A+ + AR  + K+     ++++  ++       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNAEDA  290
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ ++D+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPPEAKVYRVRDTGAPVLLNKRALV-TGDQMVSASVSNDQNGMPAVAVTLNNVAG  349
                     + ++  R+ G P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALPATRIAGV  401
            + M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   ++ + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFQTTGLE-KTEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  460
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  MIGIFASMFTAITVSRALAVLIYGSR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

456) secD in NC_012751


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  382 bits (1437),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 290/641 (46%), Positives = 457/641 (72%), Gaps = 43/641 (6%)

Query  1    MLNRYPLWKYVMLIFVILLSFLYALPNFYGEDPAVQITGVRGNAASELTLNQVHDILKKN  60
            MLN+YPLWKYV+++ V++++F+Y+ PN+Y +D+A+QI+G    A++ L + Q +     +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISG----ASTALQVTQADVDRAAK  56

Query  61   HLTSQSIALKNGTI-------LVRFKDPNVQLAARDVLISILGDSYVVALNLAPATPIWL  113
             LT  +I++K +++       L+R+   + QL+A+DV+   LGD YVVALNLA +TP WL
Sbjct  57   ALTDAGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWL  116

Query  114  RALGADPMKLGLDLRGGVHFLMEVDMD-AILSKLQIQNMDSLRRELQEKNITYTQITKQN  172
            R +GA PMKLGLDL GGVHFL+EVDMD AI ++L++ + + ++  L+  ++ Y  + +  
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYE-GEVKALLRKEKVRYRSLPQLG  175

Query  173  STHGYGIEIDFSDAKSRDEAMSYLSSRQKHMLINADRGNKLKAL---MTSDRLREVREYA  229
            +     I+++F+D   R++A + +     +  I +   N +  L   +T+ +L E+REY+
Sbjct  176  NV----IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  230  VQQNMTILRNRVNQIGVAEPLVQRQG-DRIVVELPGIQDTARAKEILGATASLEFHLVNT  288
            ++QN+T +RNRVN++GVAEPLVQRQG +RIVVELPG+QDTA AK ILG TA+LEF+L   
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  289  KVTPEAAAIGRVPADTEIKKDRDG--RLVALYKKVIMTGDHITDAFFGIDEYNRPQVNIS  346
               P+ +      + TE+   R+G     A+ + +I+TGD++TDA  ++DE  RPQVNI+
Sbjct  292  ---PDDSK-----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNIN  343

Query  347  LDSLGSAIMSDFTKDNIGKLMASLYVE------YK----DSGNKDINGRPILVKQEEVIN  396
            LD+ G+ +MS  T+ N+G+ MA +++E      Y     ++ +KD+  +  +  +  +I+
Sbjct  344  LDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIIS  402

Query  397  AANISSRFGGRFQITGIGTPSEarqlalllragaliaPIQIVEERTIGPTLGAQNISQGL  456
             A I S +G++F+ITG+   +E+ +LALLLRAG+L AP+ + EERTIGP+LGA+NI++G+
Sbjct  403  LATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGV  462

Query  457  DACLAGLAASILFMVVYYRKFGMIASTALLVNLVLIVGVMSLLPGVTLTMPGIAGIVLTL  516
            DA L G+    LF++  YR FG+IA+ AL  N+V+++++MSLL G TLT+PGIAGIVLT+
Sbjct  463  DASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTM  521

Query  517  AVAVDANVLINERIKEELRNARSIQQAIHEGYKGAFSSiidanittlitaiilYAVGTGS  576
            ++AVDANVLI  RI+EE+ N+ ++Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG+
Sbjct  522  GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP  581

Query  577  IKGFAITTIIGVLTSMFTAILGTRAIVNMLYGAKRIEKLSI  617
            +KGFA+T  +G++TSMFTAI+ TRA+VN++YG++ + KL I
Sbjct  582  VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

457) secD in NC_017271


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  380 bits (1429),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 282/631 (45%), Positives = 432/631 (69%), Gaps = 33/631 (5%)

Query  9    MLE-FPRWKYFlilvvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDADLKS  66
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  67   AGITPKA--VTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  124
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  125  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGDNSIQ  184
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+ + G N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  185  VSLGEGASADAARTALAKSQPTLTYDVSGQTIA------VKVPEAELKQIASGAIEQNLT  238
            +++G++A  + AR+ + K+     ++++   +       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  239  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDA  298
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR    G + D 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGPDD  294

Query  299  VRSGSIPPEAKVYRVRDTGAPVLLNKRALV-TGDQMVSASVSTDQNGMPAVAVTLNNVAG  357
             ++ +      ++  R+ G P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  295  SKGTT-----EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  358  QRMLDYTSANVGKLMSVVYIERIPTVS----MVDG--KEVRSVRVKEE--ALSPTRIAGV  409
            + M   T +NVG+ M+V++IE+ PT +    MV+G  K+V     KE+   +S + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  410  FGKNFQTTGLE-KVEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVIYSF  468
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  469  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  528
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  529  LINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLRGFALTM  588
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP++GFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  589  MIGIFASMFTAITVSRALAVLIYGRR--KKL  617
             +GIF+SMFTAI V+RA+  LIYG R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

458) secD in NC_017075


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  380 bits (1429),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 261/629 (42%), Positives = 428/629 (69%), Gaps = 43/629 (6%)

Query  1    MNRYPWWKYAILAFAFVVGLLYTVPNFYGEAPAVQVSSGKATVKMDPAMVQRVEQILSSA  60
            +N+YP WKY ++   +VVG++Y+ PN+Y + +A+Q+S++ +++++  A V+R  + L+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GL--KADFVQLDGTSVRARFDDTDTQIKAKDAIAHALNPDANDPTWIVALNLVSRSPQWM  118
            G+  KA  +  +G +   R+   + Q+ AKD +  AL  D      +VALNL   +P+W+
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  ARIHALPMYLGLDLRGGVHFLMQVDMKAALTKKAEAVAGDVRTLLRDKNIRHAGITREGN  178
              + A PM LGLDL GGVHFL++VDM  A+  +     G+V++LLR  ++R  ++ + GN
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  AVEVRFRETALAEQARSLLTDQLPDLQWTPTADAATGDTKLVGTLKPQAATRVQEQALKQ  238
             +++ F + A  EQAR+L+   + D++ TP+   +    ++  +L P   + ++E ++KQ
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRM--ALTPAKLAEIREYSIKQ  234

Query  239  NISTLNNRVNELGVAEPVIQQQGIDRVVVQLPGVQDTAKAKDIIGRTATLEIRLVNETNE  298
            N++T+ NRVNELGVAEP++Q+QG +R+VV+LPGVQDTA AK I+G+TA LE+RL    ++
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  299  AMDAVRGSGPVPFGSERFLERGGQPVIVYRNVVLTGENLTDAQPGFDGQTHEPTVNLTLD  358
            +    +G+  + F    F E G  +  V R +++TG+++TDA+++FD + + P VN+ LD
Sbjct  295  S----KGTTEM-FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  359  ARGARIFKDVTRENVGKRMAILLFE------------------------KGKGEVVTAPV  394
            ++G+ +    TR NVG+ MA++++E                        K    +++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  395  IRSEIGGGRVQISGRMTTEEASDQALLLRAGSLAAPMEIIEERTIGPSLGAENIAKGFHS  454
            I+S + G++ +I+G     E+S+ ALLLRAG+LAAPM + EERTIGPSLGA+NI+KG ++
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  455  VLWGFVAIAIFMCLYYMLFGVFSTLALAFNLLMLIAVLSMLQATLSLPGIAAIALVLGMA  514
             LWG + +++F+   Y +FG+++T+ALAFN++ML+A++S+L ATL+LPGIA+I L +GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  515  IDSNVLINERVREELRHGATPQVAINAGYERAFGTILDSNVTTLIAGLALLAFGSGPVRG  574
            +D+NVLI  R+REE+ +G T Q AI+ G++RA+ +ILD+N+TTL+ G  L+A G+GPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  575  FAVVHCLGILTSMFSSVMFSRGLVNLWYG  603
            FAV   LGI+TSMF+++M +R++VNL YG
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYG  613

459) secD in NC_010688


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  380 bits (1430),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 283/631 (45%), Positives = 433/631 (69%), Gaps = 33/631 (5%)

Query  9    MLE-FPRWKYFlilvvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDADLKS  66
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  67   AGITPKA--VTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  124
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  125  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGDNSIQ  184
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+ + G N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  185  VSLGEGASADAARTALAKSQPTLTYDVSGQTIS------VKVPEAELKQIASGAIEQNLT  238
            +++G++A  + AR+ + K+     ++++   ++      + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  239  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDA  298
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR    G + D 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGPDD  294

Query  299  VRSGSIPPEAKVYRVRDTGAPVLLNKRALV-TGDQMVSASVSTDQNGMPAVAVTLNNVAG  357
             ++ +      ++  R+ G P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  295  SKGTT-----EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  358  QRMLDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALSPTRIAGV  409
            + M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   +S + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  410  FGKNFQTTGLE-KVEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  468
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  469  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  528
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  529  LINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLRGFALTM  588
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP++GFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  589  MIGIFASMFTAITVSRALAVLIYGRR--KKL  617
             +GIF+SMFTAI V+RA+  LIYG R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

460) secD in NC_002971


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  379 bits (1423),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 270/634 (43%), Positives = 445/634 (71%), Gaps = 36/634 (5%)

Query  1    MNRYPLWRyillavliiisliyalPNLYGEDPAIQISAKNSAPIEAVEEKIKSTLNAQHI  60
            +N+YPLW+Y+L+  ++++++IY+ PNLY +D+AIQIS+  S++++  +  +  + +A   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISG-ASTALQVTQADVDRAAKALTD  60

Query  61   SYLSVRPV-----DNTVLVRFPSTEDQLKAQDVIQAVVGTDYSVALNLAPRTPRWLQAIG  115
            + ++V++      ++  L+R++  EDQL A+DV++  +G DY VALNLA  TP WL+ +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  116  AKPMRLGLDLRGGIHFLLDVDVGAMVKAQET---GDLHTMSTALREARIRYTEMSSDQNG  172
            A PM+LGLDL GG+HFLL+VD++  + A+     G++ ++   LR  ++RY  ++   N 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGNV  177

Query  173  VMIHFRDQAARDQARTLLEKQFPDYRFEATA----SSLRGTISITALHQIQQNAVDQITT  228
            + + F D+A R+QAR+L+ K F D+ + ++     + LR +++ + L +I++ ++ Q  T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  229  ILRNRVNELGVAEPVIQQQGESQISVDLPGIQDTARAKDIIGKVATIRLQLVDVEHDAET  288
             +RNRVNELGVAEP++Q+QG ++I V+LPG+QDTA AK I+GK A + ++L     +A  
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-----GAGP  292

Query  289  ASSTGTVPFGSKLYTF---EkqlvllkqqvvlkGTSIINASSVIGEDGRPAVRVRVSGSD  345
              S GT    + ++ F    +    + + +++ G  + +A + ++E+GRP V + + G +
Sbjct  293  DDSKGT----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  346  VPSFNRITGENVGKPLAVVYVETQTT----RHLVDG--KVVTQH--RQIERIINIATIQT  397
                +R T  NVG+++AV+++E + T    R++V+G  K V  +  ++  +II++ATIQ+
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  398  ALGNDFQITNLSTMDYAKNLALLLRSGAYPVPVDFVQERVVGPSLGQENIHMGVLSTEIG  457
            +LG++F+IT L+  + + +LALLLR+G+ + P+ F +ER +GPSLG +NI  GV ++  G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  458  ALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLPGIAGIVLTVGMAVDAN  517
             L+V +F+   YR+FG+IA +ALA+N+V ++A++S+LGATLTLPGIAGIVLT+GMAVDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  518  VLINERIREELRNGMSPQASIKAGYDRAFATIVDANVTTLIVMIILFALGSGPVQGFAVT  577
            VLI  RIREE+ NGM+ Q +I  G+DRA+++I+DAN+TTL+V  ILFA+G+GPV+GFAVT
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  578  TTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSI  611
             ++G+++SM TAI  TRA+VNL+YG R   +L I
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

461) Nwat_2196 in NC_014315


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  378 bits (1422),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 296/631 (47%), Positives = 456/631 (73%), Gaps = 25/631 (3%)

Query  1    MNRYPLWKNllvvavvlvgilyavPNLFGDTPALQISATRGA-NLKPETLARVERLLQEQ  59
            +N+YPLWK +L++AV++VG++Y+ PNL+ D +A+QIS++  A ++    + R  + L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   GLDYQSVRLEDQRL--LVRLRRLETQLKAQDALRAELGSDYSIALHLSPATPDWLRAMGG  117
            G+  ++  L ++    L+RL + E QL A+D +R  LG DY +AL+L+ +TP+WLR +G+
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  118  LPMNLGLDLRGGVHFLMEVDMKAAVQQAEERYVEDLRTLLRENRIRYLSIGRLGAGGVEI  177
             PM+LGLDL GGVHFL+EVDM  A++     Y  ++++LLR +++RY S+ +LG   +++
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV-IQL  180

Query  178  KFRNEEQRERAETLIHDEYFDLLLESTEGERSPRLEIKLSEKEQREIQRLALQQNMTTLR  237
             F ++ +RE+A +L++  + D+ + ++E +  P L + L+     EI+  +++QN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  238  NRINELGVAEPTIQQQGENRIVVQLPGVQDTARAKEILGATATLEFRLVDTSHDVQRAVE  297
            NR+NELGVAEP +Q+QG NRIVV+LPGVQDTA AK ILG TA LEFRL   ++D + + E
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  298  GRVPVGSRLY-YERGGAPIL-LKKRVILTGDHVTDASSGIEQQGGSPAVFVSLDGQGARH  355
                    ++ +  GG P   + + +I+TGD+VTDA ++++++G  P V ++LDG+G+  
Sbjct  301  --------MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVNINLDGHGGEL  351

Query  356  FSQVTGENIGKPMAVVFIETKSETR--------MeggepvkvrrrvpevINVATIRDQLS  407
             S+ T  N+G++MAV+FIE ++ T         +E + PV+  +    +I++ATI+  L+
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  408  KRFQITGLDSTEEarnlalllragalaaPIDIVEERTIGPSLGQDNIDKGFQSVLIGFAL  467
             +F+ITGL++  E+ +LALLLRAG+LAAP+ + EERTIGPSLG DNI KG ++ L G  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  468  VLVFMALYYRVFGlvadlaltanlvllvsllsmlqatlTLPGIAGIVLTVGMAVDANVLI  527
            V +F+   YR FGL+A +AL+ N+V+L++L+S+L ATLTLPGIAGIVLT+GMAVDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  528  FERIREELRNGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTGPIKGFAVTLSL  587
            F RIREE+ NG + Q +I  G+  A ++I+DAN+TTL+ + +LF+ GTGP+KGFAVT+SL
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  588  GILTSMFTAIMGTRAVINLIYGKR--RKVRL  616
            GI+TSMFTAIM TRA++NLIYG R  +K+++
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

462) secD in NC_016147


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  378 bits (1422),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 274/639 (43%), Positives = 433/639 (68%), Gaps = 35/639 (5%)

Query  1    MLE-FPRWKYVLIVLVLVFSTVYALPNIYPQDPSVQITASRGA-AIDEALRQKVAAAL--  56
            ML+ +P WKYVLI+ VLV + +Y+ PN+YP+D+++QI+++  A  + +A  ++ A AL  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  57   ATVQITPKQLETRDGDLLVRLASPEAQAKANDVLRQSLGDDYTVALNLAPTVPRWLSSLG  116
            A + + +  L   + + L+RL+  E Q  A+DV+R++LGDDY VALNLA T P WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  AKPMVRGLDLQGGVHFTLQVDQKAALDKRVEAYVEDARVTLRDARIRVDSVTRGPDNTIV  176
            A PM  GLDL GGVHF L+VD   A+D R+  Y  + +  LR  ++R  S+   P+   V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL---PQLGNV  177

Query  177  VNVAQGQDvaaarkalattlsasssasgalvgasplsYQVQGNRI-TIGLPESELARISG  235
            ++++ G+D    +       + +     +         +++G  +  ++L  + LA I  
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPA--------ELNGIPVLRMALTPAKLAEIRE  229

Query  236  DAIAQNIATLRNRVNALGVAEPVIQQQGSDRIVVELPGVQDTAAAKRLIGATATIEFRAV  295
             +I QN++T+RNRVN LGVAEP++Q+QG++RIVVELPGVQDTA AKR++G TA +EFR  
Sbjct  230  YSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG  289

Query  296  VDGDALEAQRTGNIPPEAKLYPLRDAPGVPVLLNKRVLASGEQMVNAVATVDQNGQPAVD  355
             + D        +    + ++ +R++   +  +++ ++ +G+Q+ +A A+ D++G+P V+
Sbjct  290  AGPD--------DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVN  341

Query  356  ITLNNVAGQRMFDFTSANVGKKMAVVYIERIPEV----KVVDGKE----VRSVRVSEQAL  407
            I L+  +G+ M   T +NVG+ MAV++IE+ P      ++V+G E    V++ +   + +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKII  401

Query  408  APSTIQGVFSKNFQTTGLS-KDEADNLAKLLRAGSLAAPMSFVEEYVIGPSLGAENVERG  466
            + +TIQ+ ++ +F+ TGL+ ++E+ +LA LLRAG+LAAPM F EE  IGPSLGA+N+ +G
Sbjct  402  SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG  461

Query  467  IKAVVYSFLFTLVFFTIYYRVFGAITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSV  526
            + A + + LF  +F+   YR FG I+++AL FN+++++A+MSL+GAT+TLPG+AG+ L++
Sbjct  462  VDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTM  521

Query  527  GLSVDANVLINERIREELRNGMPPKSAINAGYDKAGGTILDANLTGLIVGIALFAFGTGP  586
            G++VDANVLI  RIREE+ NGM  + AI+ G+D+A  +ILDANLT L+VG  LFA GTGP
Sbjct  522  GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP  581

Query  587  LRGFALTMIIGIFASMFTAITVSRALAVLIYGRR--KKL  623
            ++GFA+TM +GIF+SMFTAI V+RA+  LIYG R  KKL
Sbjct  582  VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

463) secD in NC_003919


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  377 bits (1419),  Expect = 7e-106, Method: Compositional matrix adjust.
 Identities = 282/631 (45%), Positives = 435/631 (69%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDGELKS  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPKA--ITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VNLGEGASADAARVALAKAQPTLTYDVSGQNIA------VKVPEAELKQIASGAIEQNLT  230
            + +G++A  + AR  + K+     ++++  ++       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDA  290
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ +DD+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPPEAKVYRLRDSNAPVLLNKRALV-TGDQMVDATVGNDENGMPAVNVTLNNAAG  349
                     + ++ +R++  P     R+L+ TGDQ+ DA  + DE+G P VN+ L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANVGKLMSVVFIERVPTVT----VVDG--KEIRSVRVKEE--ALPSTRIAGV  401
            + M   T +NVG+ M+V+FIE+ PT T    +V+G  K++     KE+   ++ + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFRTTG-lekkeaenlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  460
            +G +FR TG   + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  MIGIFASMFTAITVSRALAVLIYGSR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

464) secD in NC_020800


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  377 bits (1419),  Expect = 7e-106, Method: Compositional matrix adjust.
 Identities = 282/631 (45%), Positives = 435/631 (69%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDGELKS  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPKA--ITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VNLGEGASADAARVALAKAQPTLTYDVSGQNIA------VKVPEAELKQIASGAIEQNLT  230
            + +G++A  + AR  + K+     ++++  ++       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDA  290
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ +DD+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPPEAKVYRLRDSNAPVLLNKRALV-TGDQMVDATVGNDENGMPAVNVTLNNAAG  349
                     + ++ +R++  P     R+L+ TGDQ+ DA  + DE+G P VN+ L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANVGKLMSVVFIERVPTVT----VVDG--KEIRSVRVKEE--ALPSTRIAGV  401
            + M   T +NVG+ M+V+FIE+ PT T    +V+G  K++     KE+   ++ + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFRTTG-lekkeaenlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  460
            +G +FR TG   + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  MIGIFASMFTAITVSRALAVLIYGSR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

465) secD in NC_020815


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  377 bits (1419),  Expect = 7e-106, Method: Compositional matrix adjust.
 Identities = 282/631 (45%), Positives = 435/631 (69%), Gaps = 33/631 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDGELKS  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPKA--ITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VNLGEGASADAARVALAKAQPTLTYDVSGQNIA------VKVPEAELKQIASGAIEQNLT  230
            + +G++A  + AR  + K+     ++++  ++       + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  231  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDA  290
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ +DD+
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDS  295

Query  291  VRSGNIPPEAKVYRLRDSNAPVLLNKRALV-TGDQMVDATVGNDENGMPAVNVTLNNAAG  349
                     + ++ +R++  P     R+L+ TGDQ+ DA  + DE+G P VN+ L+  +G
Sbjct  296  ------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  350  QRMFDYTSANVGKLMSVVFIERVPTVT----VVDG--KEIRSVRVKEE--ALPSTRIAGV  401
            + M   T +NVG+ M+V+FIE+ PT T    +V+G  K++     KE+   ++ + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  402  FGKNFRTTG-lekkeaenlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYSF  460
            +G +FR TG   + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  461  LFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANV  520
            LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  521  LINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTM  580
            LI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  581  MIGIFASMFTAITVSRALAVLIYGSR--KKL  609
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

466) Psesu_1869 in NC_014924


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  376 bits (1415),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 274/616 (45%), Positives = 432/616 (71%), Gaps = 28/616 (4%)

Query  1    MLE-FPRWKylvilvvlaisalyalPNIYQNDYAVQITGSRGA-ALDQALADRVSAQLST  58
            ML+ +P WKY++IL VL ++ +Y+ PN+Y +D A+QI+G+  A  + QA  DR +  L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGVTPKSVAI--EGDNLMVRlddadaqtlaadalRGSLGENYTVALNLASTVPDWLDRIG  116
            AG+  K+ ++  +G   ++RL   + Q  A D +R +LG++Y VALNLA T P+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  AKPMVLGLDLQGGVHFVLQVDQNAALEKRVDAYAEDVRVTLRDKRIRYTAVDRRPDHTIV  176
            A PM LGLDL GGVHF+L+VD + A++ R+  Y  +V+  LR  ++RY ++  + ++ I 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  ATLGTGTDPEQARTTLAQAMPAMNV---ELQGNR-LVVRIPDAELNQIAGSAIEQNIATL  232
              +G +++ EQAR+ + ++    ++   EL+G   L + +  A L +I   +I QN++T+
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  233  RNRVNELGVAEPIIQRQGEERIVVQLPGVQDTAEAKRMIGATATLEYRAVIEGNAMDAVS  292
            RNRVNELGVAEP++QRQG +RIVV+LPGVQDTAEAKR++G TA LE+R  + + + D+ +
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDDSKG  297

Query  293  TGRVPPEAKVY-YRRDGSPVLLSKR-VIVTGDQMVAAQSSVDQNGLPAVSVTLNNVGGDR  350
            T      + ++ +R +G P     R +I+TGDQ+  A++S D++G P V++ L+  GG+ 
Sbjct  298  T------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  351  MFDFTSASVGKPMAVVYTERVPQV----KVVNGEE----VRSFRVKEEVISVANINGVFG  402
            M   T ++VG++MAV++ E+ P      ++VNG E    V++F+    +IS+A I++ +G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  403  KNFQTTGLE-KTEADDLAKLLRAGSLAAPMDFVEEKIVGPSLGKENVQRGVTAVLYAFLF  461
             +F+ TGL+ + E+ +LA LLRAG+LAAPM F EE+ +GPSLG +N+ +GV A L + LF
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  462  TLVFFAVYYRMFGVLTGIALMFNLLIVVAVMSLFGATMTLPGFAGLALSIGLSVDANVLI  521
              +F+   YR FG+++ +AL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  522  NERIREELRAGVPPKAAIANGYEKASGTIFDANLTGILAGVALYAFGTGPLKGFAVTMVI  581
              RIREE+  G+  + AI++G+++A  +I+DANLT +L G  L+A GTGP+KGFAVTM +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  582  GIFASMFTAITVSRAL  597
            GIF+SMFTAI V+RA+
Sbjct  592  GIFTSMFTAIMVTRAM  607

467) Kkor_1070 in NC_013166


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  376 bits (1413),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 275/639 (44%), Positives = 444/639 (70%), Gaps = 30/639 (4%)

Query  13   INTYPKWKYVLILFVVAISLLYAAPNIYGEDPAVQLSALRDA-TISEQQVEQIEAAWQQE  71
            +N YP WKYVLIL V+ ++++Y+APN+Y +D+A+Q+S+   A  +++ +V++   A  + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  72   GLASKAIE-RDGEKLVIARFQSNEEQLQAQEIANKILNPSLENQSYVVALNLAPATPDWL  130
            G++ KA    +  K  + R+  +E+QL A+++  K L      + YVVALNLA +TP+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALG-----DDYVVALNLARTTPNWL  116

Query  131  SSLGGKPMKLGLDLRGGIHFLMQVDMEQAMARQQEQLRRDFIESLTAEKPSIRGRVETID  190
             ++G+ PMKLGLDL GG+HFL++VDM++A+  +      +    L  EK   R+ +  ++
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRS-LPQLG  175

Query  191  NGLVISFRNQDDAERAFSVLYQNYIDRIDINLAEQNNRPVVRATFNQTKLQAIQDNAIDQ  250
            N + ++F ++ + E+A +++ + + D ++I  AE N  PV+R ++  +KL  I++ +I Q
Sbjct  176  NVIQLGFGDDAEREQARALVRKTFTD-FEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  251  NRLILSNRVNSLGVAEPLIQRQGSDRIVVQLPGVQDSALAKRILGATATLEFRLVNHEAD  310
            N   + NRVN LGVAEPL+QRQG++RIVV+LPGVQD+A AKRILG TA LEFRL      
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGA----  290

Query  311  IVAAQQGRVPAGSKLFE---SERGPIVVFDEVQVSGDHLTDAFSSFHPQTNQPIVSVRLD  367
              ++++++  + + +FE   + R +  V   + ++GD++TDA +SF+ +  +P V++ LD
Sbjct  291  --GPDDSK--GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLD  345

Query  368  GEGGARMLRTTTANRGNSLAMILKESVPVFE-IKDGKRELVKSSVVET------LVSAPR  420
            G+GG  M R+T +N G S+A+I+ E  P     ++    + K   V+T      ++S + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  421  INGAFGTDFFIEGPDFTPANTKDLATQLRSGALIAPTFIVEERTIGASLGAENIEKGINS  480
            I++++G++F I G +   +++ +LA  LR+G+L AP ++ EERTIG+SLGA+NI KG+++
Sbjct  406  IQSPLGSQFRITGLN-GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  481  VIIGFSLVVLFMLLYYKAFGVVANIALIFNVVTIVAVMSIMGATLTLPGIAGIVLTVGMA  540
             + G  +V LF++  Y+ FG++A +AL FN+V ++A+MS++GATLTLPGIAGIVLT+GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  541  VDANVIIFERIREELRHGTGVAQAIDKGYSQALStiadanittaiaaiiLYAVGTGPIKG  600
            VDANV+IF RIREE+ +G  V +AI  G+ +A ++I DAN+TT + + IL+A+GTGP+KG
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  601  FAITLFIGILTSMFTAILVSRGIINLIYGRGKKPSKLWI  639
            FA+T+ +GI+TSMFTAI+V+R+++NLIYG G+   KLWI
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYG-GRDFKKLWI  622

468) secD [H] in NC_019902


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  375 bits (1409),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 279/624 (45%), Positives = 441/624 (71%), Gaps = 24/624 (3%)

Query  1    MRNTYPVWVYALIALAIVTGGLYALPNIFPEDPAVQVANSRTG--VVDENIASIIDVILG  58
            M N YP+W Y LI   +V G +Y+ PN++P+D+A+Q++ + T+  V + ++      + +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AQ-GLTPHRIEEPDGQKLLRFDSAERQLRAADVLRGALDDDHVVALSLAPATPEWLRAIN  117
            A   + +  + E +   LLR+   E QL A DV+R AL+DD VVAL+LA +TP+WLR + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GRPMSLGLDLRGGVHFLMEVDLNAVIGTAMERYTNEFRGRLREERLAFDEIERGARDLMI  177
            + PM LGLDL GGVHFL+EVD++  I++ +  Y  E ++ LR E++ +  + + +  + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  RFASEQDRAQALTWLRRNYRGELNFVERGLGADSSLEVTLDAEHLTELRRLALQQNISTL  237
             F+ + +R QA + +R+ +  ++++    L + + L ++L +  L+E+R  +++QN++T+
Sbjct  181  GFGDDAEREQARALVRKTF-TDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  238  RKRVDELGVAEPIIAQQGESRIVVQLPGVQDTARAKEILGATATLEFRMVaegedapaaa  297
            R+RV+ELGVAEP++ +QG +RIVV+LPGVQDTA AK ILG TA LEFR+         +A
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---------GA  290

Query  298  asgrapagTRLYYERDGA--PVLLQRRVMLTGDYITGASSGIAQDTGGPAVFINLDGQGA  355
            +++ + + T ++  R+G+  +  ++R +++TGD +T+A +++ ++ G P V INLDG+G+
Sbjct  291  GPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDGHGG  349

Query  356  RIFSRVTAENVGRLMATVFIetrtett-------eeDGELVRRTSRSEE-VINIARINEP  407
             + SR T  NVGR MA +FIE R  TT         + ++  +T + +  +I++A I+ P
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  408  LGRRFQITGLESTREAHNlalllragalaaPMSIVEERTVGPSLGQENIDRGMQSVIIGF  467
            LG +F+ITGL++  E+ +LALLLRAG+LAAPM + EERT+GPSLG +NI +G+++ + G 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  468  IAVMLFMVLYYRVFGLIANFALALNLVFIVSILSMLQATLTLPgiagivlvvgiavdaNV  527
            + V LF++  YR FGLIA  ALA+N+V +++++S+L ATLTLPGIAGIVL +G+AVDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  528  LIFERIREELRNGMSPKAAISGGYERAFSTIADANVTTLIAAVVLFLFGTGPIKGFAITL  587
            LIF RIREE+ NGM+ + AIS G++RA+++I DAN+TTL+ + +LF  GTGP+KGFA+T+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  588  SIGVVVSMFTAIVVTRAIVNLTYG  611
            S+G+  SMFTAI+VTRA+VNL YG
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYG  613

469) secD in NC_008782


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  375 bits (1409),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 260/637 (41%), Positives = 436/637 (69%), Gaps = 49/637 (7%)

Query  1    MNRYPVWKYAilvivlliGALYTLPNFFGEAPAVQVSSAKATLKVDAAVQQRVEDALKAA  60
            +N+YP+WKY +++ VL++G +Y+ PN++ + +A+Q+S+A ++L+V  A  +R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NVA--SDSIVFDGNSVRARFDTPDNQLKAKDAIEKALIPDPSDPSYIVALNLVSRSPDWL  118
             ++  + S+  +G++   R+   ++QL AKD + KAL     +  Y+VALNL   +P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-----GDDYVVALNLARTTPNWL  116

Query  119  TALHARPMYLGLDLRGGVHFMLQVDMQAAITKKIESYAGDLRSALREKNIRHGGIGREGQ  178
              + A PM LGLDL GGVHF+L+VDM+ AI  ++  Y G++++ LR  ++R  ++ + G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  AVDIRVRDEATLTAARNLIADQFPDLAVVSSADGDGMR-LRATIKPEALRKVQEQALKQN  237
             +++   D+A    AR L+   F D+  +++A+ +G+  LR ++ P  L  ++E ++KQN
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  238  MVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDEGTEA  297
            + T++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE R+     ++
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  298  RAAEMGTGPVPFGAEKYLDRNG--QAVIVKKQVVLTGENLTDAQPGFDGQTQEPTVNLTL  355
            +++          +E +  R+G   A  V + +++TG+++TDA+++FD + + P VN+ L
Sbjct  296  KGT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINL  344

Query  356  DAKGSRIFKDITRENVGKRMAIVLFE------------------------KGKGEVVTAP  391
            D+ G+ +    TR NVG+ MA++++E                        K    +++ +
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  392  VIRSEIGGGRVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIERGIQ  451
             I+S + G++ +I+G    +E+++ ALLLRAG+LAAPM + EE TIGPSLGADNI +G++
Sbjct  405  TIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  452  SVVWGMVAIAAFMCVYYRLFGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGV  511
            + +WGM+ ++ F+   YR+FG+++T+AL+ N+++L+A++S+L ATLTLPGIA++ L++G+
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  512  AIDSNVLINERIREELRAGVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVR  571
            A+D+NVLI  RIREE+  G++ Q AI+ G++RA ++ILD+N+TTL+ G  L+A GTGPV+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  572  GFAVVHCIGILTSMFSAVFFSRGLVNLWYGRK--KKL  606
            GFAV   +GI+TSMF+A+  +R++VNL YG +  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

470) secD in NC_018140


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  374 bits (1404),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 285/623 (46%), Positives = 441/623 (71%), Gaps = 30/623 (4%)

Query  1    MLIVIAVIGFIYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKNANMDYKSLVVE  58
            +++ + V+GFIY+ PNLY +++ +QIS+++   + T++  ++    L +A +  K+  + 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  59   RDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLR  116
             +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + A PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  117  GGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDKGIELRFRDSDS  173
            GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++  I+L F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  174  MENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTMSILRNRVNELG  231
             E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q ++ +RNRVNELG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVN  291
            V+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+      G   + 
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-----KGTTEMF  302

Query  292  DKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTREN  350
            +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G  L ++ TR N
Sbjct  303  E--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELMSRATRSN  359

Query  351  IGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQNALGSNFQITGL  402
            +G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ++LGS+F+ITGL
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGL  419

Query  403  TDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevgmglilvlmlvY  462
             +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   GM ++ ++++  
Sbjct  420  NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI  479

Query  463  YHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREEL  522
            Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDANVLI+ RIREE+
Sbjct  480  YRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  523  RNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvvlslglltsmlt  582
             NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV +SLG++TSM+T
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  583  gITYTRAIVNWYYGGRNVKKLSI  605
            +I  TRA+VN  YGGR+ KKL I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

471) secD in NC_016002


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  374 bits (1407),  Expect = 6e-105, Method: Compositional matrix adjust.
 Identities = 263/623 (43%), Positives = 426/623 (69%), Gaps = 39/623 (6%)

Query  1    MNRYPLWKYFIIVVALVVSTIYTLPNFFGETPAVQISSSRQSIPVDTALMGRVEAALTAQ  60
            +N+YPLWKY +I+  LVV+ IY+ PN++ + +A+QIS++  ++ V  A ++R   ALT  
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   --HITPDGLFLDGNSLKVRFHDPDTQIKGRDAIQQALGDNYIIALNLLAASPDWLTKLKA  118
               + + +L  +G++  +R+   + Q+ ++D +++ALGD+Y++ALNL  ++P+WL ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  YPMFLGLDLRGGVHFLLEVDMKAATDKTMERYAGDIRREFKDKKVRYGTIKRNGNTLEVQ  178
             PM LGLDL GGVHFLLEVDM  A D  +  Y G+++  ++  KVRY ++ + GN +++ 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LRDAATLKAAEDAVARALPSLSFTSDD-NSYK-LSLTLKPEEITRIQSDAVKQNITTLHN  236
            + D A    A   V +++  + +T+ + N+   L ++L P  ++ I+  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  237  RVNELGVAEPIIQQSGANRIVVQLPGVQDTAKAKDILGRTATLEVRMVSDDQSMVAEALA  296
            RVNELGVAEP++Q+ GANRIVV+LPGVQDTA AK ILG+TA LE R+ ++         +
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG---------P  292

Query  297  GNVPGGYELLDELTPRGPQKILVSKEVELTGDNINDAQPGFDENGTPAVHINLDSTGASI  356
            ++  G  E++ E+   G     V + + +TGD++ DA+++FDE+G P V+INLD+ G+ +
Sbjct  293  DDSKGTTEMF-EFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  357  FRQVTAENIGKRMAMVLVE------------------------KGRAEVVTAPVIRSEIG  392
              + T  N+G+ MA++++E                        K    +++ + I+S + 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-  410

Query  393  GGRVQISGSMNAAEANDTALLLRAGSLAAPMNIIEERTVGPSLGKENIEKGFHSTLWGFA  452
            G++ +I+G    +E+++ ALLLRAG+LAAPM + EERT+GPSLG +NI KG +++LWG  
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  453  VIAVFMLIYYRVFGLISALSLGVNLFMLVAVLSMLQATLTLPGIAAIALTLGMAIDANVL  512
             +++F++  YR FGLI++++L+ N+ ML+A++S+L ATLTLPGIA+I LT+GMA+DANVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  513  INERIREELRNGVPPHSAIQAGYQHAWATILDSNittliaglalliFGSGPVRGFAVVHC  572
            I  RIREE+ NG+  + AI  G+++A ++ILD+N+TTL+ G  L+  G+GPV+GFAV   
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  573  LGIMTSMFSAVLVSRGFVNLWYG  595
            LGI TSMF+A++V+R+ VNL YG
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYG  613

472) secD in NC_009465


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  374 bits (1405),  Expect = 9e-105, Method: Compositional matrix adjust.
 Identities = 283/632 (45%), Positives = 439/632 (70%), Gaps = 28/632 (4%)

Query  1    MNHYS-WHKNALIVFVLLLSILYALPNIFGSDLAIQVSSVDNALIVDQ-DLVKIKNVLKI  58
            +N Y+ W K  LI+ VL+++++Y+ PN++  D AIQ+S+   AL V Q D+ +  + L  
Sbjct  2    LNKYPLW-KYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   QQIKFKSIELINQRI--LVRFKNKMQQLLAKDALNKALSRSYVVALNLAPSVPVWLASLG  116
              I  K+  L ++    L+R+ ++ +QL AKD + KAL+  YVVALNLA + P WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GKAMSLGLDLRGGVHFLLEVDMKAVISASMDTAYNELRVLLRKDRL-YKSIKQKGNSIVI  175
            + +M LGLDL GGVHFLLEVDM   I A +     E++ LLRK+++ Y+S+ Q GN I +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  176  HFKRSELKDEASQLIKSElsdlvllsntddlllnIGISESVQK--QAKKSALKQNITTLR  233
             F     +++A  L++  ++D+ + +   + +  + ++ +  K  + +  ++KQN+TT+R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  234  NRVNELGVAEPIIQQQGLERIVVQLPGVQDTARAKEILGAVATLEFRLVDEKNDPQIAIQ  293
            NRVNELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG  A LEFRL    +D++ + +
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  294  SGRLPIGSKLYYFKDG-RPLL-LKSHVITTGENITGATSGVHQENNTPMVNITLDSAGGR  351
                     ++ F++G RP   +   +I TG+++T+A ++  +E+  P VNI LD+ GG 
Sbjct  301  ---------MFEFREGGRPAAAVERGLIITGDQVTDAKASF-DEHGRPQVNINLDGHGGE  350

Query  352  AMFNTTKKYLHHRMAVVFIENKVETI--------VKNGktikkrtttrdiiNAATIKGIF  403
             M  +T+  + + MAV+FIE++  T         V ++  ++     + II+ ATI++ +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  404  SSRFQVTGIDNIKEarnlalllragslsaPIEIIEERTIGPSLGSDNITKGVISILVGFI  463
            +S+F++TG++   E+ +LALLLRAG+L+AP+ + EERTIGPSLG+DNITKGV + L G +
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  464  LVLLFMAMRYQLFGMVANVALTLNLVMILSILSLLQATLTLPGIAGIVLTVGMAVDANVL  523
            +V LF+   Y++FG++A VAL++N+VM+L+++SLL ATLTLPGIAGIVLT+GMAVDANVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  524  IFERIKEEMVINRNLPKAISVGYDKALLTILDANITTLIAALILFSFGTGVIKGFAITLS  583
            IF RI+EE+     + +AIS G+D+A  +ILDAN+TTL+ + ILF+ GTG +KGFA+T+S
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  584  IGIITSMFTAIIVSRAIINKIYSGKKLEEISI  615
            +GI+TSMFTAI+V+RA++N IY+G+ +  + I
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

473) secD in NC_018139


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  373 bits (1403),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 284/623 (46%), Positives = 441/623 (71%), Gaps = 30/623 (4%)

Query  1    MLIVIAVIGFVYAIPNLYTENPVVQISAGTD--EDTETIKNQVESILKNANMDYKSLVVE  58
            +++ + V+GF+Y+ PNLY +++ +QIS+++   + T++  ++    L +A +  K+  + 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  59   RDGVEVVF--SSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLR  116
             +G   ++  S  + QL A+DV++++LG DY VALNLA +TP WL  + A PMK GLDL 
Sbjct  72   ENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLS  131

Query  117  GGVHFLLEVDVESVISRR---YEGIMKNIGQELREAGIRYSGIRYLSDKGIELRFRDSDS  173
            GGVHFLLEVD++  I  R   YEG +K +   LR   +RY ++  L++  I+L F D   
Sbjct  132  GGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQLGFGDDAE  187

Query  174  MENALVELRQKISDVVFVKTKTQN-SILG-AISPAELNSIRQNTIEQTMSILRNRVNELG  231
             E+A   +R+ ++D  +  +  +  ++L  A++PA L  IR+ +I Q ++ +RNRVNELG
Sbjct  188  REQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELG  247

Query  232  VGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVN  291
            V+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA LEF+L    +D+      G   + 
Sbjct  248  VAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS-----KGTTEMF  302

Query  292  DKLYMMDGHPIL-LKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTREN  350
            +  +  +G+P   + R ++++GD +T A +SFD++ + P V+I+L+G G  L ++ TR N
Sbjct  303  E--FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELMSRATRSN  359

Query  351  IGKRMAIVFVETKTTT----QTINGeekrvtkke----ervISAPVIQNALGSNFQITGL  402
            +G+ MA++F+E + TT    Q +NG EK V  +      ++IS + IQ++LGS+F+ITGL
Sbjct  360  VGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGL  419

Query  403  TDSKEASNlalllragalpaaIYPVEERTVGPTLGKENIRRGLISlevgmglilvlmlvY  462
             +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   GM ++ ++++  
Sbjct  420  NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI  479

Query  463  YHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREEL  522
            Y+FFGLIA +AL +N+V L AL+S+++ATLTLPGIAGIVLT+GMAVDANVLI+ RIREE+
Sbjct  480  YRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI  539

Query  523  RNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAvvlslglltsmlt  582
             NG++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV +SLG++TSM+T
Sbjct  540  ANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT  599

Query  583  gITYTRAIVNWYYGGRNVKKLSI  605
            +I  TRA+VN  YGGR+ KKL I
Sbjct  600  AIMVTRAMVNLIYGGRDFKKLWI  622

474) secD in NC_017267


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  373 bits (1402),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 282/632 (45%), Positives = 438/632 (70%), Gaps = 35/632 (5%)

Query  1    MLE-FPRWKYFlillvlavsalyalPNIYQKDPSVQITASRGA-QLDDALRSRIDADLKA  58
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGITPKA--VTKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  116
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIAYRSVERRADNSIQ  176
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+  + +N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQ  179

Query  177  VSLGEGadadaarvalakaQPTLT-YDVSGQNIA------VKVPEAELKQIASGAIEQNL  229
            +++G++A+ + AR  +   + T+T ++++  ++       + +  A L +I   +I QNL
Sbjct  180  LGFGDDAEREQARALV---RKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  230  TTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNAED  289
            TT+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR  +++ ++D
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGPDD  294

Query  290  AVRSGNIPPEAKVYRVRDTGAPVLLNKRALV-TGDQMVSASVSNDQNGMPAVAVTLNNVA  348
            +         + ++  R+ G P     R+L+ TGDQ+  A  S D++G P V + L+  +
Sbjct  295  S------KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  349  GQRMFDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALPATRIAG  400
            G+ M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   ++ + I +
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  401  VFGKNFQTTGLE-KTEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGVTAVVYS  459
             +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + +
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  460  FLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDAN  519
             LF  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  520  VLINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALT  579
            VLI  RIREE+  G+  + AI+ G+++A  +ILDANLT L+V+  L+A GTGP+KGFA+T
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  580  MMIGIFASMFTAITVSRALAVLIYGSR--KKL  609
            M +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

475) secD in NC_007614


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  373 bits (1402),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 263/628 (42%), Positives = 431/628 (69%), Gaps = 39/628 (6%)

Query  1    MNRYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGLLNRVEEALKKA  60
            +N+YP WKY++I   +++G++Y+ PN+Y + +A+QIS    A +   + ++R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   DLPTTGMFL--EGGSIKVRFADTDTQIRARDALQSLLGNGYMVALNLLPNSPQWLTSIGA  118
            ++P  +  L  +G +  +R++  + Q+ A+D ++  LG++Y+VALNL   +P+WL ++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFLLEVDMKGALSKALDRFSSDIRGSLREKKIPYAGLDKRGSLIIVK  178
             PM LGLDL GGVHFLLEVDM  A+   L  + +++++ LR  K+ Y +L + G++I + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FRNAESRAQAEAEIKKNYPDLDLREENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRN  238
            F +   R QA A ++K + D+++   +++    L  +L P     I++ +++QN+TT+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPIIQQAGADRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRG  298
            RVNELGVAEP++Q+ GA+R+VV+LPGVQDTA AK ILG+TA LE R+    +D  ++   
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT---  298

Query  299  QIPFGSELYSERGGG--PLLVKKQVVLTGDRINDAQPGFDNNNQPAVHLNLDNSGARIFQ  356
                 +E++  R GG  +  V + +++TGD++ DA+++FD++ +P V++NLD  G+ +  
Sbjct  299  -----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  QLTRDNVGKRMAILLIE------------------------KNQAEVITAPVIREEIGGG  392
            + TR NVG+ MA+++IE                        K++  +I+ + I+  +G+ 
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-  412

Query  393  RVQISGRMTSEEARDValllragalaaPMDIVEERTVGPSLGAENIESGFNSTLYGFAAI  452
            + +I+G     E+ ++ALLLRAG+LAAPM + EERT+GPSLGA+NI  G +++L G   +
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  453  AVFMTIYYLVFGFisvlalgvnllllvgllsilQATLTLPGMAAIALTLGMAIDANVLIN  512
            ++F+   Y  FG+I+ +AL+ N+++L++L+S+L ATLTLPG+A+I LT+GMA+DANVLI 
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  513  ERIRDELREGMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSGPIKGFAVVLCLG  572
             RIR+E+ +GM+ Q AI+ G++RA ++ILD+N+TTL+ G  LFA G+GP+KGFAV + LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  573  ILTSMFSAVMVSRGFVNLVYGSR--RKL  598
            I+TSMF+A+MV+R+ VNL+YG+R  +KL
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

476) secD in NC_002977


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  372 bits (1400),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 278/622 (45%), Positives = 434/622 (70%), Gaps = 25/622 (4%)

Query  1    MRNRFPLWKNLMVAAVLILGIIYALPNFFGEDPSVQLSA------VRAAKVDDSLKVQVQ  54
            M N++PLWK +++ AVL++G+IY+ PN++ +D+++Q+S+      V  A VD + K   +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  55   glldaaglkakaVEMADKRMLIRFGDTDSQLKASDVLNEKLGDAYTVALNLAPSTPSWLR  114
            + +   +     +   +K  L+R++  + QL A DV+   LGD Y VALNLA +TP+WLR
Sbjct  61   AGIPVKASS---LAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLR  117

Query  115  AFGAKPMYLGLDLRGGVHFLLQVDMDAAIKQAEDRYAEDARSLLRENKIRYQSVEKQNGV  174
              GA PM LGLDL GGVHFLL+VDMD AI      Y  + ++LLR +K+RY+S+ +   V
Sbjct  118  NVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV  177

Query  175  IQVRLPDPNALSQAQVLLKRELRGLQIDVKE--GENLLEGRLSEVERREIKRFAVAQNTT  232
            IQ+ + D     QA+ L+++ + +++I   E  G  +L   L+     EI+ +++ QN T
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  233  TLRNRVNELGVAEPVIQQQGEDRIVVQLPGVQDTARAKEILGATATLEFRLVDNEHPVPA  292
            T+RNRVNELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG TA LEFRL        +
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG-----P  292

Query  293  EGEKAPLGSHLYRDRQNRPVLLERKIIVTGDQVVDAASGIDQQSGQPAVYVTLNSVGAKK  352
            ++ K+      +R+    +  +ER +I+TGDQV DA +++D++ G+P V + L++ G+  
Sbjct  293  DDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGEL  351

Query  353  MGDTTRENVGRAMAVVYIENKSET-------KEVDGQkvttk-kkveevINIATIRDRFS  404
            M+ +TR NVGR+MAV++IE+++ T       + V+ +      K    +I++ATI+  ++
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  405  KRFQITGLDSTEEarnlalllragalaaPVDIVEERTVGPSMGKENIDRGVKSNGYGFIA  464
             +F+ITGL++  E+ +LALLLRAG+LAAP+ + EERT+GPS+G +NI +GV ++  G + 
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  465  IAVFMILYYRMFGLFSIlalaanvlllvavlsllqatltlpglaGIALTVGMAIDANVLI  524
            +++F++  YR FGL++ +ALA N+++L+A++SLL ATLTLPG+AGI LT+GMA+DANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  525  NERIREELRAGSTPHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAGPVRGFALVLCI  584
              RIREE+  G T + AI  G++RA+++ILD+N+TT++ G  LF +G+GPV+GFA+ + +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  585  GILTSMFSAVLVSRALVNFTYG  606
            GI+TSMF+A++V+RA+VN+ YG
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYG  613

477) secD in NC_011992


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  372 bits (1399),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 259/637 (41%), Positives = 435/637 (69%), Gaps = 49/637 (7%)

Query  1    MNRYPVWKYAilvivlliGALYTLPNFFGEAPAVQVSSAKATLKVDAAVQQRVEDALKAA  60
            +N+YP+WKY +++ VL++G +Y+ PN++ + +A+Q+S+A ++L+V  A  +R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NVA--SDSIVFDGNSVRARFDTPDNQLKAKDAIEKALIPDPSDPSYIVALNLVSRSPDWL  118
             ++  + S+  +G++   R+   ++QL AKD + KAL     +  Y+VALNL   +P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-----GDDYVVALNLARTTPNWL  116

Query  119  TALHARPMYLGLDLRGGVHFMLQVDMQAAITKKIESYAGDLRSALREKNIRHGGIGREGQ  178
              + A PM LGLDL GGVHF+L+VDM+ AI  ++  Y G++++ LR  ++R  ++ + G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  AVDIRVRDEATLTAARNLIADQFPDLAVVSSADGDGMR-LRATIKPEALRKVQEQALKQN  237
             +++   D+A    AR L+   F D+  +++A+ +G+  LR ++ P  L  ++E ++KQN
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  238  MVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDEGTEA  297
            + T++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE R+     ++
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  298  RAAEMGTGPVPFGAEKYLDRNG--QAVIVKKQVVLTGENLTDAQPGFDGQTQEPTVNLTL  355
            +++          +E +  R+G   A  V + +++TG+++TDA+++FD + + P VN+ L
Sbjct  296  KGT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINL  344

Query  356  DAKGSRIFKDITRENVGKRMAIVLFE------------------------KGKGEVVTAP  391
            D+ G+ +    TR NVG+ MA++++E                        K    +++ +
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  392  VIRSEIGGGRVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIQ  451
             I+S + G++ +I+G    +E+++ ALLLRAG+LAAPM + EE TIGPSLGADNI +G++
Sbjct  405  TIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  452  SVVWGMVAIAAFMCVYYMLFGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGV  511
            + +WGM+ ++ F+   Y +FG+++T+AL+ N+++L+A++S+L ATLTLPGIA++ L++G+
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  512  AIDSNVLINERIREELRAGVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVR  571
            A+D+NVLI  RIREE+  G++ Q AI+ G++RA ++ILD+N+TTL+ G  L+A GTGPV+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  572  GFAVVHCIGILTSMFSAVFFSRGLVNLWYGRK--KKL  606
            GFAV   +GI+TSMF+A+  +R++VNL YG +  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

478) secD in NC_007086


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  369 bits (1385),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 284/631 (46%), Positives = 434/631 (69%), Gaps = 33/631 (5%)

Query  9    MLE-FPRWKYFlilvvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDADLKS  66
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  67   AGITPKA--VTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  124
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  125  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGDNSIQ  184
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+ + G N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  185  VSLGEGASADAARTALAKSQPTLTYDVSGQTIS------VKVPEAELKQIASGAIEQNLT  238
            +++G++A  + AR+ + K+     ++++   ++      + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  239  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDA  298
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR    G + D 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGPDD  294

Query  299  VRSGTIPPEAKVYRLRDSNAPVLLNKRALV-TGDQMVSASVSNDQNGMPAVAVTLNNVAG  357
             ++ T      ++ +R++  P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  295  SKGTT-----EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  358  QRMLDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALSPTRIAGV  409
            + M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   +S + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  410  FGKNFQTTGLE-KTEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGvtavvfsf  468
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  469  vftlvfftvYYRMFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANV  528
            +F  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  529  LINERIREELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTM  588
            LI  RIREE+  G+  + AI  G+++A  +ILDANLT L+VG  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  589  IIGIFASMFTAITVSRALAVLIYGSR--KKL  617
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

479) secD in NC_003902


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  369 bits (1385),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 284/631 (46%), Positives = 434/631 (69%), Gaps = 33/631 (5%)

Query  9    MLE-FPRWKYFlilvvlavsalyalPNVYQKDPSVQITASRGA-QLDDALRSRIDADLKS  66
            ML+ +P WKY LIL VL V+ +Y+ PN+Y  D+++QI+++  A Q+ +A   R    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  67   AGITPKA--VTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLG  124
            AGI  KA  ++ +G + ++RL+  + Q  A+DV+R+ LG++Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  125  GRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGDNSIQ  184
            + PM LGLDL GGVHF ++VD   A++ RL  +  ++++ LR  ++ YRS+ + G N IQ
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG-NVIQ  179

Query  185  VSLGEGASADAARTALAKSQPTLTYDVSGQTIS------VKVPEAELKQIASGAIEQNLT  238
            +++G++A  + AR+ + K+     ++++   ++      + +  A L +I   +I QNLT
Sbjct  180  LGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  239  TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDA  298
            T+RNRVN LGV+EP +QRQG +RIVVELPG+QDTAEAKR++G TA+LEFR    G + D 
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGPDD  294

Query  299  VRSGTIPPEAKVYRLRDSNAPVLLNKRALV-TGDQMVSASVSNDQNGMPAVAVTLNNVAG  357
             ++ T      ++ +R++  P     R+L+ TGDQ+  A  S D++G P V + L+  +G
Sbjct  295  SKGTT-----EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  358  QRMLDYTSANVGKLMSVVYIERIPTVT----MVDG--KEVRSVRVKEE--ALSPTRIAGV  409
            + M   T +NVG+ M+V++IE+ PT T    MV+G  K+V     KE+   +S + I + 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  410  FGKNFQTTGLE-KTEAENlakllksgslaaPMDFVEEYVIGPSLGAENVERGvtavvfsf  468
            +G +F+ TGL+ + E+ +LA LL++G+LAAPM F EE  IGPSLGA+N+ +GV A + + 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  469  vftlvfftvYYRMFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANV  528
            +F  +F+   YR FG I++VAL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  529  LINERIREELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTM  588
            LI  RIREE+  G+  + AI  G+++A  +ILDANLT L+VG  L+A GTGP+KGFA+TM
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  589  IIGIFASMFTAITVSRALAVLIYGSR--KKL  617
             +GIF+SMFTAI V+RA+  LIYG+R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

480) secD in NC_012559


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  368 bits (1382),  Expect = 6e-103, Method: Compositional matrix adjust.
 Identities = 266/626 (43%), Positives = 424/626 (68%), Gaps = 41/626 (6%)

Query  1    MNRYPLWKYliialalivsaiYTVPNFYGESPAVQISSTRSAYPVNTSLMDQVETLLKTR  60
            +N+YPLWKY++I   L+V+ IY+ PN+Y + +A+QIS++ +A  V  + +D+    L   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   ELSPDGIYLDG---GSLKVRFRSPDEQLKARDAIQQALGDHYIVALNLLSSSPAWLASIK  117
             ++  +  L     G+L +R+   ++QL A+D +++ALGD+Y+VALNL  ++P WL ++ 
Sbjct  62   GIPVKASSLAENGKGGL-LRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AHPMFLGLDLRGGVHFLLEVDMKAAVDKTLERYAGDIRRELKAKKIRYGQIRRTGDSLEI  177
            A PM LGLDL GGVHFLLEVDM  A+D  L  Y G+++  L+  K+RY  + + G+ +++
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  GARDEATLKAIEDVIARQLPNLTLRADDNTGR--LIASLSEPEIRKVQEDAVRQNITTLH  235
            G  D+A       ++ + + ++ + + +  G   L  +L+ + +  ++E +++QN+TT++
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  236  NRVNELGVAEPVIQQSGANRIVVQLPGVQDTAKAKDILGRTATLEVRMVEDDSQKLSDAI  295
            NRVNELGVAEP++Q+ GANRIVV+LPGVQDTA AK ILG+TA LE R+  +  +      
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD------  294

Query  296  AGVTPAGYELMQEMTSRGPQPILVKKEVELTGDNINDAQPGFDENGTPAVHINLDSTGSS  355
            +  T   +E+ +     G  +  V + + +TGD++ DA+++FDE+G P V+INLD+ G+ 
Sbjct  295  SKGTTEMFEFREG----GRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  356  IFRQVTAENIGRRMAMILVE------------------------KGKGEVVTAPVIRSEI  391
            +  + T  N+GR MA+I++E                        K    +++ + I+S +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  392  GGGRVQISGSMNAAEANDVALLLRAGSLAAPMNIIEERTVGPSLGADNIRMGFNSTVYGF  451
            G+ + +I+G    +E++++ALLLRAG+LAAPM + EERT+GPSLGADNI  G ++++ G 
Sbjct  411  GS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  452  LAIAVFMVFYYRVFGTISTLSLGANVMFLIALLSMLQATLTLPGIAAIALTLGMAIDANV  511
            L +++F++  YR FG I+T++L+ N++ L+AL+S+L ATLTLPGIA+I LT+GMA+DANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  512  LINERVREELRNGMPPQAAIRAGYDHAWHTILDSNittliaglalliFGSGPVRGFAVVH  571
            LI  R+REE+ NGM  Q AI  G+D+A  +ILD+N+TTL+ G  L+  G+GPV+GFAV  
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  572  CLGILTSMFSAVMVSRGLVNLVYGSR  597
             LGI+TSMF+A+MV+R++VNL+YG+R
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGR  615

481) Mmol_1937 in NC_012968


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  367 bits (1380),  Expect = 8e-103, Method: Compositional matrix adjust.
 Identities = 255/628 (41%), Positives = 430/628 (69%), Gaps = 42/628 (6%)

Query  1    MNRYPLWKNIFVVFMILMGLIYAIPNLFGESPAIQVTPTKSTSKIDPALLAQVEQILQKE  60
            +N+YPLWK ++++ ++++G+IY+ PNL+ + +AIQ++ + ++ ++  A + +  + L   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   KIAYDGIYL--DARGVKARFANTDTQIKAKDLLQANLSSDYTVALNLLSRSPDWLRSIGA  118
             I+  +  L  +++G   R+++ + Q+ AKD+++  L+ DY VALNL   +P+WLR++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  KPMYLGLDLRGGVHFLLQVDMKAALDKAAERFVGDFRTALRKERVSYAGVTREGQTVQIR  178
             PM LGLDL GGVHFLL+VDM  A+D     + G+ ++ LRKE+V Y ++ + G+ +Q+ 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FTSAAELAKARKIISNQYPDLTLKDSANGEDIVLSASLNAVEQKRIQEFALKQNIQTLHN  238
            F   AE  +AR ++ + + D+ +  +      VL  +L +     I+E+++KQN+ T++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RINELGVAEPIIQQQGMDRVVVQLPGVQDTAKAKEILGRTATLEIRLVDEEKSDAMTLEK  298
            R+NELGVAEP++Q+QG +R+VV+LPGVQDTA AK ILG+TA LE+RL             
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL------------G  289

Query  299  AAQGQAPIGTDAFKDRE-GRP-ILVKKNVVLTGDYITDAGPGVNGQTGQSVVNVTLDARG  356
            A+ +++   T+ F  RE GRP   V + +++TGD +TDA ++ + + G++ VN+ LD++G
Sbjct  290  AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHG  348

Query  357  ARVFQQVTRENVGKRMAILLIE------------------------KGNTEVVTAPVINE  392
            + +  + TR NVG+ MA+++IE                        K +  +++ + I+ 
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  393  EIGGGRVQISGMANTQEATDISLLLRAGALAAPMDIVEERTVGPSMGEENIKRGMHSTLW  452
             + G++ +I+G+    E+++++LLLRAG+LAAPM + EERT+GPS+G +NI +G++++LW
Sbjct  409  PL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  453  GFAAIAVFMIVYYMVFGGISvlalginllllvavlsmlqaTLTLPGLAAVALTLGMAIDA  512
            G   +++F++  Y  FG I+ +AL++N+++L+A++S+L ATLTLPG+A++ LT+GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  513  NVLVNERIREELRSGNTPQASIHIGYDRAWDTILDSNVTTMIAGIALFLFGSGPVKGFAV  572
            NVL+  RIREE+ +G T Q +I  G+DRA  +ILD+N+TT++ G  LF  G+GPVKGFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  573  VHVLGILTSMFSAVVVSRAIVNWVYGSR  600
               LGI+TSMF+A++V+RA+VN +YG+R
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGR  615

482) secD in NC_004757


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  367 bits (1379),  Expect = 9e-103, Method: Compositional matrix adjust.
 Identities = 262/628 (42%), Positives = 435/628 (70%), Gaps = 37/628 (5%)

Query  1    MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRAGIQTDMALLQRAEQVLKQH  60
            +N+YPLWKY++I   +++G++Y+ PN++ + +A+QIS   +++Q   A ++RA + L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GLPYNGTILESTGIK--IRFSDTDTQIKARDILDAEVGSDYIVALNLLPNSPQWMRHIGA  118
            G+P +++ L   G    +R+S  + Q+ A+D++   +G DY+VALNL   +P+W+R++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFMLQVDMAGALTKALDRYNADLRSTLREQRIPSAGIDRDRSRIIIK  178
             PM LGLDL GGVHF+L+VDM  A+   L  Y++++++ LR +++   ++ +  + I + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FRDEQAREKAISELGKTFEDLAFRSEDVNGERRLVASIKPEALIRMQNTAVQRNITTLRN  238
            F D+  RE+A + + KTF D+ + + ++NG   L  ++ P  L  +++ ++++N+TT+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEDGDIDAALRG  298
            RVNELGVAEP++Q+ GA+R++V+LPGVQDTA AK ILG+TA LE R+    +D  ++   
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT---  298

Query  299  SVPSGTELLSERGGGH--LLVKKQVLLTGDRITDAQPGFDQDRQAAVHVTLDNNGSRIFK  356
                 TE++  R GG+    V + +++TGD++TDA+++FD++ ++ V++ LD +G+ +  
Sbjct  299  -----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  QLTRNNVGKRMAILLVE------------------------KNVTEVVTAPVIREEIGGG  392
            + TR+NVG+ MA++++E                        K+   +++ + I+  +G+ 
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-  412

Query  393  RVQISGQMNSIEARDValllragalaaPMEIIEERTVGPSLGAENIERGFNSTLYGFLIV  452
            + +I+G     E+ ++ALLLRAG+LAAPM + EERT+GPSLGA+NI +G +++L G L+V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  453  SVFIMIYYSAIGVISVVALATNllfligllsilQATLTLPGMAGMALTVGMAIDANVLIN  512
            S+FIM  Y  +G+I+ VALA N++ L++L+S+L ATLTLPG+AG+ LT+GMA+DANVLI 
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  513  ERIRDELRHGATPQAAIHAGYERAWDAIIDTNlttllaglglmmFGSGPIKGFAVVLCLG  572
             RIR+E+ +G T Q AI  G++RA  AI+D+NLTTLL G  L   G+GP+KGFAV + LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  573  ILTTLFSAVTVSRAMVNLFYGNRKLTHV  600
            I+T++F+A+ V+RAMVNL+YG R +  +
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

483) secD in NC_010513


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  366 bits (1375),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 428/625 (69%), Gaps = 36/625 (5%)

Query  5    PRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGG-HIDDAFRQQVMSDLQASGIVP  63
            P WKYVLI+ VLV++ +Y+ PN+Y  D+++QI++   + ++ +A  ++    L  +GI  
Sbjct  6    PLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPV  65

Query  64   KA--VTKDGESLMVRLMSLEMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMV  121
            KA  ++ +G + ++RL   E Q  A DV+R  +G++Y VALNLA T P+WL ++G+ PM 
Sbjct  66   KASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMK  125

Query  122  LGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSNRIGFRMVERRPDNTIRVTFDD  181
            LGLDL GGVHF L+VD   A++ R+  +  EV++ L  +++ +R +  + +N I++ F+D
Sbjct  126  LGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQLGFGD  184

Query  182  DAHLNEARMVL---FKEQVGLSYSVSGNTLIA------RVSENELRQIASGAVEQNLTTL  232
            DA+ ++AR ++   F +     + ++   L +       ++   L +I   ++ QNLTT+
Sbjct  185  DAEREQARALVRKTFTD-----FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  233  RNRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVR  292
            RNR+NELGVAEP++QRQG +RIVVELPGVQDTAEAKR++G TA LEFR   + D      
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD------  293

Query  293  TGNVPPEARVYYIRGTNQPVL-LNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNVAGQR  351
              +    + ++ +R   +P   +++ +I++GD++ +A  + DE+G P VN+ L   +G+ 
Sbjct  294  --DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  352  MLDYTQRNLYKLMSVVYIERIPTVS----MVDG--KEVRGVRLKEEA--LSPTRIAGVFG  403
            M   T+ N+ + M+V++IE+ PT +    MV+G  K+V    +KE+   +S + I + +G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  404  KNFRTTGLE-KTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGvtavvfsflf  462
             +FR TGL+ + E+ +L+ LLRAG+LAAPM F EE  IGPSLGA+N+ +GV A + + LF
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  463  tlvfftIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLI  522
              +F+   YR FG+I+++AL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  523  NERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMII  582
              RIREE+ +GM  + AI  G+D+A ++ILDANLT L+VG  L+A GTGP+KGFA+TM +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  583  GIFASMFTAITVSRSLSALIYGTRN  607
            GIF+SMFTAI V+R++  LIYG R+
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRD  616

484) secD in NC_004556


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  366 bits (1374),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 427/625 (69%), Gaps = 36/625 (5%)

Query  12   PRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGG-HIDDAFRQQVMTDLQASGIVP  70
            P WKYVLI+ VLV++ +Y+ PN+Y  D+++QI++   + ++ +A  ++    L  +GI  
Sbjct  6    PLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPV  65

Query  71   KA--VTKEGESLMVRLMSLEMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMV  128
            KA  ++ +G + ++RL   E Q  A DV+R  +G++Y VALNLA T P+WL ++G+ PM 
Sbjct  66   KASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMK  125

Query  129  LGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSKRIGFRMVERRPDNTIRVTFDD  188
            LGLDL GGVHF L+VD   A++ R+  +  EV++ L   ++ +R +  + +N I++ F+D
Sbjct  126  LGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQLGFGD  184

Query  189  DAHLNEARMVL---FKEQVGLSYSVSGNTLIA------RVSENELRQIASGAVEQNLTTL  239
            DA+ ++AR ++   F +     + ++   L +       ++   L +I   ++ QNLTT+
Sbjct  185  DAEREQARALVRKTFTD-----FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  240  RNRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVR  299
            RNR+NELGVAEP++QRQG +RIVVELPGVQDTAEAKR++G TA LEFR   + D      
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD------  293

Query  300  TGNVPPEARVYYIRGTNQPVL-LNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNAAGQR  358
              +    + ++ +R   +P   +++ +I++GD++ +A  + DE+G P VN+ L   +G+ 
Sbjct  294  --DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  359  MLDYTQRNLYKLMSVVYIERIPTVS----MVDG--KEVRGVRLKEEA--LSPTRIAGVFG  410
            M   T+ N+ + M+V++IE+ PT +    MV+G  K+V    +KE+   +S + I + +G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  411  KNFRTTGLE-KTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGvtavvfsflf  469
             +FR TGL+ + E+ +L+ LLRAG+LAAPM F EE  IGPSLGA+N+ +GV A + + LF
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  470  tlvfftIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLI  529
              +F+   YR FG+I+++AL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  530  NERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMII  589
              RIREE+ +GM  + AI  G+D+A ++ILDANLT L+VG  L+A GTGP+KGFA+TM +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  590  GIFASMFTAITVSRSLSALIYGTRN  614
            GIF+SMFTAI V+R++  LIYG R+
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRD  616

485) HEAR0306 in NC_009138


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  366 bits (1376),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 271/633 (43%), Positives = 430/633 (68%), Gaps = 41/633 (6%)

Query  1    MNRYPLWKYITIVIALLLGALYTIPNFFGESPAVQISSAKATVKVDSSLMTQVEQVLQKA  60
            +N+YPLWKY+ I+  L++G +Y+ PN++ + +A+QIS+A ++++V  + + +  + L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GLQSDGMVYETIGTQGTVRVRFPNTDVQFKAKGLLEANLNLDPADPTYLVAFNLLPNTPA  120
            G+   +      G  G +R+  ++ + Q+ AK+++   L  D     Y+VA+NL   TP 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLQSLHAAPMYLGLDLRGGVHFLMQVDTKAVMNKRVLGLQASARAILRDKNVRHAGIARN  180
            WL+++ A+PM LGLDL GGVHFL++VD    ++ R+   ++  +A+LR  +VR  ++++ 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GDNIEILFRDAETRSKARTALGDELRELLLTDAGSGDELKLVGALQPAALKQTVEDAVQQ  240
            G+ I++ F D   R +AR+ +   + ++ +T A   +   L  AL PA L +  E +++Q
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NITTLSKRVNELGVAEPLIQRQGADRIVVQLPGVQDVSRAKDIIGKTATLEVRL-VDETV  299
            N+TT+ +RVNELGVAEPL+QRQGA+RIVV+LPGVQD + AK I+GKTA LE RL  +   
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  300  TRGTEDTATIPFGSELFKVGKNAPVVLYKDPIITGEYISSASASFDQNQQPSVSIDLNGD  359
            ++GT +     F    F+ G  ++  + ++ IITG+ ++ A ASFD++ +P V+I+L+G+
Sbjct  295  SKGTTEM----FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  360  GGRRMREATRTRVGKAMAIVLFE------------------------KNKGEVLTVATIR  395
            GG  M  ATR+ VG++MA++++E                        K+   ++++ATI+
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  396  DELGARFQITGMGsseaasdlalllragslaaPMEIIEERTIGPQLGAENIKKGFDATLY  455
              LG++F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGP LGA+NI KG DA+L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  456  GFIGIAIFMIIYYRAFGFFSVFALAVNVMLLIALLSMLQATLTLPGIAAIALTLGMAIDA  515
            G + +++F++  YR FG+++  ALA N+++L+AL+S+L ATLTLPGIA+I LT+GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  516  NVLINERIREELRAGHSPQTAIAMGFERAWATILDSNVTTLIAGLALLIFGSGAVRGFAV  575
            NVLI  RIREE+  G + Q AI+ GF+RA ++ILD+N+TTL+ G  L+  G+G+V+GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  576  VHCLGILTSIFSAVFVSRGVVNLWYGRK--KKL  606
               LGI+TS+F+A+ V+R++VNL YG +  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

486) Mfla_0512 in NC_007947


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  366 bits (1374),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 273/636 (43%), Positives = 440/636 (70%), Gaps = 43/636 (6%)

Query  1    MNRYPLWKYlmvlvvvllgllYAAPNLFGESPAVQITAAKSNIQVDSALLENTENILKQE  60
            +N+YPLWKY+++L V+++G++Y+APNL+ + +A+QI++A + +QV  A ++ + + L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIPFEALFL--DATGVKVRFPSTDIQLQAKDALQARLGKDYVIALNLLSRSPEWLRSIGA  118
             IP  A  L  ++ G  +R++  + QL AKD ++  LG DYV+ALNL   +P+WLR++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  RPMYLGLDLRGGVHFLLQVDMKSALDQAAERYVGDFRSVLRTARINYLGVSRDGQAVNIR  178
             PM LGLDL GGVHFLL+VDM  A+D     Y G+ +++LR  ++ Y ++++ G+ +++ 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FKDTAELSKAQRVLEKEYPDLTFRTSNRGEDSILTAVLSEPAKKRIQEFAIKQNIQTLHN  238
            F D AE  +A+ ++ K + D+ +  ++    ++L   L+ +    I+E++IKQN+ T++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RINELGVAEPVIQQQGIDRVVVQLPGVQDTAKAKEILGRTATLEIRMVDEDRSNAVTLEN  298
            R+NELGVAEP++Q+QG +R+VV+LPGVQDTA AK ILG+TA LE+R+            +
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG--------PD  293

Query  299  ASKGQVPFGTEFYIDRNG--IPMLVKKNVVLTGDYITDAGPGMDPQGGGAVVHVTLDARG  356
             SKG     TE +  R+G   +  V + +++TGD +TDA ++ D +G   V ++ LD++G
Sbjct  294  DSKG----TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQV-NINLDGHG  348

Query  357  ARIFKQVTRENVGKRMAILLIE------------------------KGQAEVITAPVIRE  392
            + +  + TR NVG+ MA+++IE                        K +  +I+ + I+ 
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  393  EIGGGRVQISGMANTQEATDValllragalaaPMEIIEERTVGPSMGEANIERGMHSTLW  452
             +G+ + +I+G+    E++++ALLLRAG+LAAPM + EERT+GPS+G  NI +G++++LW
Sbjct  409  PLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  453  GFVAISIFMIAYYMLFGTvsvlalsinlillvallsmlqatlTLPGIAAVALTLGMAIDA  512
            G + +S+F++A Y +FG ++ +AL++N+++L+AL+S+L ATLTLPGIA++ LT+GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  513  NVLINERIREEMRNGNTPQASIHAGYERAFGTILDANVTTMIAGLALFMFGTGPVKGFAV  572
            NVLI  RIREE+ NG T Q +I  G++RA+ +ILDAN+TT++ G  LF  GTGPVKGFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  573  VHVLGILTSMFSAVLVSRAVINLIYGYRRKISKLSI  608
               LGI+TSMF+A++V+RA++NLIYG  R + KL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYG-GRDFKKLWI  622

487) NAL212_1060 in NC_015222


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  366 bits (1374),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 267/628 (43%), Positives = 431/628 (69%), Gaps = 39/628 (6%)

Query  1    MNRYALWQYLIIAVSlllgllYTLPNFYGEspaiqispirisissDTALLQRVEDTLKQA  60
            +N+Y+LW+Y++I   L++G++Y+ PN+Y + +AIQIS    ++    A ++R   +L +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLEMNGIFLEEGGIK--VRFADTDLQMKAKDLLESALGSEYIIALNLLPNSPRWLTNLGA  118
             + +++  L E G    +R++  + Q+ AKD++  ALG +Y++ALNL   +P WL N+GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFMLAVDMEGALEKSLDRYSIDIRSTLREKRISYTGLEKQGKKLVIK  178
             PM LGLDL GGVHF+L VDM+ A++  L  Y  ++++ LR  ++ Y +L + G+ + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FRDIESRSKAEAELKSNFEDFTLNIEDVDNRYHLIAAIKPEVQIRMQDSAVMQNITTLRN  238
            F D   R +A A ++  F DF +   +++    L  A+ P     +++ ++ QN+TT+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPIIQKAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDDEHDLDAALRG  298
            RVNELGVAEP++Q+ GA+R++V+LPGVQDTA AK ILG+TA LE R+  + +D  ++   
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT---  298

Query  299  RVPVGTELHQERGG--SPILVKKQVLLTGERITDAQPGFDKDNQPAVHINLDNHGSRIFK  356
                 TE+ + R G  ++  V + +++TG+++TDA+++FD + +P V+INLD HG+ +  
Sbjct  299  -----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  QLTRENVGRRMAILLIE------------------------KNTAEVVTAPVIREEIGGG  392
            + TR NVGR MA+++IE                        K+   +++ + I+  +G+ 
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-  412

Query  393  RVQISGRMTSLEARDValllragalaaPMDIIEERTIGPSLGADNIARGFNSTLYGFLAV  452
            + +I+G     E+ ++ALLLRAG+LAAPM + EERTIGPSLGADNI++G +++L G L V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  453  AIFIMVYYTAFGVISAIAlgfnllllvgllSIMQATLTLPGMAALALTVGMAIDANVLIN  512
            ++FIM  Y  FG+I+++AL+FN+++L++L+S++ ATLTLPG+A++ LT+GMA+DANVLI 
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  513  ERIRDELRAGASPQLAIHAGYERAFGTILDSNITTLIAGIALFAFGSGPVKGFAVVLCLG  572
             RIR+E+  G + Q AI  G++RA+ +ILD+N+TTL+ G  LFA G+GPVKGFAV + LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  573  ILTSVFTAVFVSRAMVNFMYG--NLRKL  598
            I+TS+FTA+ V+RAMVN++YG  +++KL
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

488) secD in NC_017562


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 427/625 (69%), Gaps = 36/625 (5%)

Query  5    PRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGG-HIDDAFRQQVMTDLQASGIVP  63
            P WKYVLI+ VLV++ +Y+ PN+Y  D+++QI++   + ++ +A  ++    L  +GI  
Sbjct  6    PLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPV  65

Query  64   KA--VTKEGESLMVRLMSLEMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMV  121
            KA  ++ +G + ++RL   E Q  A DV+R  +G++Y VALNLA T P+WL ++G+ PM 
Sbjct  66   KASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMK  125

Query  122  LGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSKRIGFRMVERRPDNTIRVTFDD  181
            LGLDL GGVHF L+VD   A++ R+  +  EV++ L   ++ +R +  + +N I++ F+D
Sbjct  126  LGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQLGFGD  184

Query  182  DAHLNEARMVL---FKEQVGLSYSVSGNTLIA------RVSENELRQIASGAVEQNLTTL  232
            DA+ ++AR ++   F +     + ++   L +       ++   L +I   ++ QNLTT+
Sbjct  185  DAEREQARALVRKTFTD-----FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  233  RNRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVR  292
            RNR+NELGVAEP++QRQG +RIVVELPGVQDTAEAKR++G TA LEFR   + D      
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD------  293

Query  293  TGNVPPEARVYYIRGTNQPVL-LNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNAAGQR  351
              +    + ++ +R   +P   +++ +I++GD++ +A  + DE+G P VN+ L   +G+ 
Sbjct  294  --DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  352  MLDYTQRNLYKLMSVVYIERIPTVS----MVDG--KEVRGVRLKEEA--LSPTRIAGVFG  403
            M   T+ N+ + M+V++IE+ PT +    MV+G  K+V    +KE+   +S + I + +G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  404  KNFRTTGLE-KTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGvtavvfsflf  462
             +FR TGL+ + E+ +L+ LLRAG+LAAPM F EE  IGPSLGA+N+ +GV A + + LF
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  463  tlvfftIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLI  522
              +F+   YR FG+I+++AL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  523  NERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMII  582
              RIREE+ +GM  + AI  G+D+A ++ILDANLT L+VG  L+A GTGP+KGFA+TM +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  583  GIFASMFTAITVSRSLSALIYGTRN  607
            GIF+SMFTAI V+R++  LIYG R+
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRD  616

489) secD in NC_010577


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 427/625 (69%), Gaps = 36/625 (5%)

Query  5    PRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGG-HIDDAFRQQVMTDLQASGIVP  63
            P WKYVLI+ VLV++ +Y+ PN+Y  D+++QI++   + ++ +A  ++    L  +GI  
Sbjct  6    PLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPV  65

Query  64   KA--VTKEGESLMVRLMSLEMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMV  121
            KA  ++ +G + ++RL   E Q  A DV+R  +G++Y VALNLA T P+WL ++G+ PM 
Sbjct  66   KASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMK  125

Query  122  LGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSKRIGFRMVERRPDNTIRVTFDD  181
            LGLDL GGVHF L+VD   A++ R+  +  EV++ L   ++ +R +  + +N I++ F+D
Sbjct  126  LGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQLGFGD  184

Query  182  DAHLNEARMVL---FKEQVGLSYSVSGNTLIA------RVSENELRQIASGAVEQNLTTL  232
            DA+ ++AR ++   F +     + ++   L +       ++   L +I   ++ QNLTT+
Sbjct  185  DAEREQARALVRKTFTD-----FEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  233  RNRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVR  292
            RNR+NELGVAEP++QRQG +RIVVELPGVQDTAEAKR++G TA LEFR   + D      
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD------  293

Query  293  TGNVPPEARVYYIRGTNQPVL-LNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNAAGQR  351
              +    + ++ +R   +P   +++ +I++GD++ +A  + DE+G P VN+ L   +G+ 
Sbjct  294  --DSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  352  MLDYTQRNLYKLMSVVYIERIPTVS----MVDG--KEVRGVRLKEEA--LSPTRIAGVFG  403
            M   T+ N+ + M+V++IE+ PT +    MV+G  K+V    +KE+   +S + I + +G
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLG  411

Query  404  KNFRTTGLE-KTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGvtavvfsflf  462
             +FR TGL+ + E+ +L+ LLRAG+LAAPM F EE  IGPSLGA+N+ +GV A + + LF
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  463  tlvfftIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLI  522
              +F+   YR FG+I+++AL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  523  NERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMII  582
              RIREE+ +GM  + AI  G+D+A ++ILDANLT L+VG  L+A GTGP+KGFA+TM +
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  583  GIFASMFTAITVSRSLSALIYGTRN  607
            GIF+SMFTAI V+R++  LIYG R+
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRD  616

490) secD in NC_008344


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  365 bits (1370),  Expect = 5e-102, Method: Compositional matrix adjust.
 Identities = 262/628 (42%), Positives = 435/628 (70%), Gaps = 37/628 (5%)

Query  1    MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRADVRTDTALLQRLEQVLNQQ  60
            +N+YPLWKY++I   +++G++Y+ PN++ + +A+QIS   + ++   A ++R  + L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLPYNGTILEATGIK--IRFADTDTQIKAKDILSSEVGSDYVVALNLLPNSPQWMRHIGA  118
             +P +++ L   G    +R++  + Q+ AKD++   +G DYVVALNL   +P+W+R++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRSTLREQRIPSAGIERDRSKIIIR  178
             PM LGLDL GGVHF+L+VDM  A+   L  + +++++ LR +++   ++ +  + I + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FRDEQAREKAITELGKAFEDLAFQSEEVGGEARLTISIKPEALVRMQNTAVQRNITTLRN  238
            F D+  RE+A + + K+F D+ + + E+ G + L +++ P  L  +++ ++++N+TT+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEEGDIDAALRG  298
            RVNELGVAEP++Q+ GA+R++V+LPGVQDTA AK ILG+TA LE R+    +D  ++   
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT---  298

Query  299  SVPPGTELFTERGGG--PLLVKKQILLTGDRITDAQPGFDQDHQPAVHLTLDNNGSRIFK  356
                 TE+F  R GG  +  V + +++TGD++TDA+++FD++ +P V++ LD +G+ +  
Sbjct  299  -----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  QLTRNNVGKRMAILLVE------------------------KNLTEVVTAPVIREEIGGG  392
            + TR+NVG+ MA++++E                        K+   +++ + I+  +G+ 
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-  412

Query  393  RVQISGKMSSIEARDValllragalaaPMEIVEERTIGPSLGAENISKGFNSTLFGFLAV  452
            + +I+G  +  E+ ++ALLLRAG+LAAPM + EERTIGPSLGA+NI+KG +++L G L V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  453  ATFIMAYYSAIGVISVValainllfligllsilqaTLTLPGMAGMALTVGMAIDANVLIN  512
            + FIMA Y  +G+I+ VALA+N++ L++L+S+L ATLTLPG+AG+ LT+GMA+DANVLI 
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  513  ERIRDEIRHGASPQAAIHAGYERAWDAIIDTNlttllaglglMIFGSGPIKGFAVVLCLG  572
             RIR+EI +G + Q AI  G++RA  AI+D+NLTTLL G  L   G+GP+KGFAV + LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  573  ILTTLFSAVTVSRAMVNLLYGNRKLARV  600
            I+T++F+A+ V+RAMVNL+YG R + ++
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

491) secD in NC_014803


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  364 bits (1368),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 293/633 (47%), Positives = 452/633 (72%), Gaps = 25/633 (3%)

Query  1    MLNKFPIWKyllvlavlaigllyaSPNLYGRDPAIQVSGAKGT-DVDLSVVDKVNAILKK  59
            MLNK+P+WKY+L+LAVL +G++Y++PNLY  D+AIQ+SGA  + +V  + VD+    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   DNVSAKSTKLEDGQI--LVRFKNVEDQLKAQDLLRNSLSDDYISAINMAPAQPAWLKSLG  117
              ++ K++ L +     L+R+ + EDQL A+D++R++L+DDY+ A+N+A + P WL+++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  GNPMKLGLDLSGGVHFTMEIDMVTAVDNQLEQMEQDFRSDLREEKLRYRSVRRVAGSERM  177
            + PMKLGLDLSGGVHF +E+DM  A+D +L   E + ++ LR EK+RYRS+ +++    +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNV--I  178

Query  178  RVEMRNEEDKEAAERFLESRYP-LNVYIDDSSNDNAFFATMSELKLKEIRDYAIKQNETI  236
            ++   ++ ++E A  ++   +  +++   + +    +  +++  KL EIR+Y+IKQN T 
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  237  IRNRINQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEILGATATLEFREVDENADISAA  296
            +RNR+N++GVAEP VQRQGA+RI+V+LPG+QDTA AK ILG TA LEFR      D  ++
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  297  AQGRIPPGTEMIMSRDG--YPVVLKKRIILEGSHITGAQSGADEYQRPQVSIKLDSKGGA  354
                    TEM+  R+G   +  + + +I+ G ++T+A+++ DE  RPQV+I+LD+ GG 
Sbjct  299  --------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  355  KMNAFTKRAIGKRMATVFIEYKPSG-----KKDSEGKALPPIKVEE---VINVATIQARL  406
             M+  T+  +G+ MA +FIE +P+        ++  K +P     E   +I++ATIQ+ L
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  407  DRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEAGMTavalgfa  466
            +  FRITG++  +E+ +L+LLLRAG+L AP+ + EERT+GPSLG +NI  G+ A   G  
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  467  fvlafMLIYYKGFglvanialaanlvliigvMSLIPGATLTLPGIAGIVLTVGMAVDANV  526
            FV  F++  Y+ FGL+A +ALA N+V+++++MSL+ GATLTLPGIAGIVLT+GMAVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  527  LIFERIREELADGRSPQQAVHFGYDSAFSTIFDANittliaaiilFAVGTGPVAGFAVTL  586
            LIF RIREE+A+G + Q+A+  G+D A+++I+DAN+TTL+ + ILFA+GTGPV GFAVT+
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  587  AIGILTSMFTAIVGTRAVINLFIGGKRVDKLSI  619
            ++GI+TSMFTAI+ TRA++NL+ GG+   KL I
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

492) secD in NC_007298


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  362 bits (1360),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 266/626 (43%), Positives = 423/626 (68%), Gaps = 40/626 (6%)

Query  1    MNRYPLWKYITIAIALVMGFVYTLPNFFGESPAVQVSSAKATIKVDEKAKARVEDSLKAA  60
            +N+YPLWKY+ I   LV+GF+Y+ PN++ + +A+Q+S+A ++++V +    R   +L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GITHDGIQLDFNGVKT--RFKDTDTQLKAKDALEKAFNPDAADPQYVVALNLLAASPQWL  118
            GI   +  L  NG     R+   + QL AKD + KA+  D     YVVALNL  ++P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TSLHALPMYLGLDLRGGVHFLLQVDMKGALTKRLDSTSADLRTVMRDKNLRHGGVNREGE  178
             ++ A PM LGLDL GGVHFLL+VDM  A+  RL    +++++++R  ++R  ++ + G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  RIIIKFRDAETQNKARIAISDSQPDLLLTDAGDAAEPRLIATLKPQAQQKIGEFALKQNI  238
             I + F D   +++AR  +  +  D+ +T A   + P L  +L P     I E+++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  TTLHNRINELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDILGRTATLEIRMVDDSTGAL  298
            TT++NR+NELGVAEP++Q+QGA+RIVV+LPGVQDTA AK ILG+TA LE+R+  ++    
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP----  292

Query  299  DAALAGNPPFGTEVYNERGGQPLLVKKQVVLTGDRLTDAQPGFDNQTQEAAVHLTLDAAG  358
            D + +    F    + E G  +  V + +++TGD++TDA+++FD++ + + V++ LD+ G
Sbjct  293  DDSKGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHG  348

Query  359  ARIFKDITRENVGKRMAILLIE------------------------KGKGEVVTAPVIRT  394
            + +    TR NVG+ MA+++IE                        K    +++ + I++
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  395  EIGGGRVQISGRMTTTEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENIQKGFHSTMW  454
             + G++ +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGA+NI KG ++++W
Sbjct  409  PL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFAAIAVFMIIYYQMFGvvsvlalasnllflvaILSLLQATLTLPGIAAIALTLGMAIDA  514
            G   +++F++  Y+ FG+++ +ALA N++ L+A++SLL ATLTLPGIA+I LT+GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVLINERVREELRAGMPPQAAISEGYERAFGTILDSNittliaglalliFGSGPVRGFAV  574
            NVLI  R+REE+  GM  Q AISEG++RA+ +ILD+N+TTL+ G  L+  G+GPV+GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSIFSSVVVSRGLVNLIYG  600
               LGI+TS+F++++V+R++VNLIYG
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYG  613

493) Nit79A3_0478 in NC_015731


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  362 bits (1361),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 263/636 (42%), Positives = 431/636 (68%), Gaps = 43/636 (6%)

Query  1    MNRYALWKYLIIAVSlllgllYTLPNFYGESPAVQISPLRVSANVDTTLLQRVEDALKKA  60
            +N+Y+LWKY++I   L++G++Y+ PN+Y + +A+QIS    + +V  + ++R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLETVGILLEADSIK--VRFADTDVQIKAKDLLESSLGKEYIIALNLLPNSPAWLTNLGA  118
             +   +  L  ++    +R++  + Q+ AKD++  +LG +Y++ALNL   +P WL N+GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFMLAVDMEGALDKSLDRYSADIRSTLREHKIPYTGLEKQDKKLILK  178
             PM LGLDL GGVHF+L VDM+ A+D  L  Y +++++ LR +K+ Y +L + ++ + L 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FRDTEARAKAETELKSNYPDLGLIEKEADNRYHLIAAIKLEAQVRMQDAAVMQNITTLRN  238
            F D   R +A + ++  + D+ +   E +    L  A+       +++ ++ QN+TT+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPIIQKAGADRVIVQLPGVQDTAKAKDILGRTATLEIRMVDDEHDLDAAIRG  298
            RVNELGVAEP++Q+ GA+R++V+LPGVQDTA AK ILG+TA LE+R+  + +D  ++   
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT---  298

Query  299  KIPFGTELYEERGGG--PILVKKYVLLTGERITDAQPGFDKDNQPAVHINLDNSGSRIFK  356
                 TE++E R GG  +  V + +++TG+++TDA+++FD + +P V+INLD  G+ +  
Sbjct  299  -----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMS  353

Query  357  QLTRENVGKRMAILLIE------------------------KNQTEVVTAPVIREEIGGG  392
            + TR NVG+ MA+++IE                        K++  +++ + I+  +G+ 
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-  412

Query  393  RVQISGRMTSREARDValllragalaaPMDIIEERTVGPSLGAENIARGYNSTLYGFLAV  452
            + +I+G     E+ ++ALLLRAG+LAAPM + EERT+GPSLGA+NI++G +++L G L V
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  453  AFFVIIYYTAFGvisvialalnilllvgllsiMQATLTLPGMAALALTVGMAIDANVLIN  512
            ++F++  Y  FG+I+ +ALA+N+++L++L+S++ ATLTLPG+A++ LT+GMA+DANVLI 
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  513  ERIRDELRAGASPQLAIHAGFERAFGTILDSNITTLIAGIALFAFGSGPVKGFAVVLCLG  572
             RIR+E+  G + Q AI  GF+RA+ +ILD+N+TTL+ G  LFA G+GPVKGFAV + LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  573  ILTSVFTATFVSRGMVNLMYGSRRRLDHVPIGKIWI  608
            I+TS+FTA  V+R+MVNL+YG+R       + K+WI
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGR------DFKKLWI  622

494) SCD_n02208 in NC_022357


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  361 bits (1358),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 262/621 (43%), Positives = 434/621 (70%), Gaps = 35/621 (5%)

Query  1    MNRYPLWKYILIAAAMLFGLIYTLPNFFGESPAVQVSPLRGMTKVDQGLMKQVEEVLKQN  60
            +N+YPLWKY+LI A ++ G+IY+ PN++ + +A+Q+S      +V Q+ + +    L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLAFQGIAF--DSSGVKVRFADADTQIKAKDILQSNLGENFVVALNLLSSSPKWLSSMGA  118
             ++ ++ ++  ++ G  +R++  + Q+ AKD+++  LG+++VVALNL  ++P+WL ++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFLLQVDMKGAITKALDRYNGDIRTSLREKRIAYAGISRQDQAVEIK  178
             PM LGLDL GGVHFLL+VDM  AI   L  Y+G++++ LR  ++ Y ++++ ++ +++ 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FRDAESRQKAMDELQKTSPDLLLKEVDAGAEFKLVATLKLGAQKRIQEFALQQNITTLRN  238
            F D   R++A   ++KT  D+ +   +  +   L  +L  +    I+E++++QN+TT+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RINELGVAEPIIQQQGIDRVVVQLPGVQDTAKAKDILGRTATLEIRMVDEEHDVTAAVQS  298
            R+NELGVAEP++Q+QG +R+VV+LPGVQDTA AK ILG+TA LE+R+    +D  ++ + 
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEM  301

Query  299  GQIPFGSELYTERkglpllvkkgvvltgDYISDAQPGFEGQSGEPAVHINLDGRGARIFK  358
                F    + E    +  V +G+++TGD ++DA+++F+ + G P V+INLDG+G+ +  
Sbjct  302  ----FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELMS  353

Query  359  QLTRDNVGKRMAILLIE------------------------KGKGEVITAPVIREEIGGG  394
            + TR NVG+ MA+++IE                        K    +I+ + I+  +G+ 
Sbjct  354  RATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-  412

Query  395  RVQISGRMTTMEASDVSLLLRAGALAAPMEIIEERTVGPSMGAENIAKGFNSNIYGFVAI  454
            + +I+G     E+S+++LLLRAG+LAAPM + EERT+GPS+GA+NI+KG ++++ G + +
Sbjct  413  QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFV  472

Query  455  AAFMMFYYRFFGvvsttalavnvlllvailsllqatlTLPGMAGIALTVGMAIDSNVLIN  514
            + F+M  YRFFG+++T ALA N+++L+A++SLL ATLTLPG+AGI LT+GMA+D+NVLI 
Sbjct  473  SLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  515  ERIREEIRNGLSPQAAIHSGYERAFATILDSNITTLIAGVALFWLGSGPVRGFAVVLCLG  574
             RIREEI NG++ Q AI  G++RA+++ILD+N+TTL+ G  LF +G+GPV+GFAV + LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  575  ILTSMFSAVVVSRGMVNLTYG  595
            I+TSMF+A++V+R+MVNL YG
Sbjct  593  IFTSMFTAIMVTRAMVNLIYG  613

495) secD in NC_002488


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  361 bits (1356),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 271/627 (44%), Positives = 429/627 (69%), Gaps = 31/627 (4%)

Query  5    PRWKYVLIFVVFVLSTLYALPNVYQKDPSVQITANRGG-HIDDAFRQQVMTDLQASGIVP  63
            P WKYVLI+ V+V++ +Y+ PN+Y  D+++QI++   + ++ +A  ++    L  +GI  
Sbjct  6    PLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPV  65

Query  64   KA--VTKEGESLMVRLMSLEMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMV  121
            KA  ++ +G + ++RL   E Q  A DV+R  +G++Y VALNLA T P+WL ++G+ PM 
Sbjct  66   KASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMK  125

Query  122  LGLDLVGGVHFALQVDQKAALNKCMDAFVEEVRSTLGSKRIGFRMVERRPDNTIRVTFDD  181
            LGLDL GGVHF L+VD   A++  +  +  EV++ L   ++ +R +  + +N I++ F+D
Sbjct  126  LGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL-PQLGNVIQLGFGD  184

Query  182  DAHLNEARMVLFKEQVGLNYSVSGNTLIA------RVSENELRQIASGAVEQNLTTLRNR  235
            DA+ ++AR ++ K     ++ ++   L +       ++   L +I   ++ QNLTT+RNR
Sbjct  185  DAEREQARALVRKTFT--DFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNR  242

Query  236  INELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGN  295
            +NELGVAEP++QRQG +RIVVELPGVQDTAEAKR++G TA LEFR   + D        +
Sbjct  243  VNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD--------D  294

Query  296  VPPEAKVYYIRGTNQPVL-LNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNVAGQRMLD  354
                + ++ +R   +P   +++ +I++GD++ +A  + DE+G P VN+ L   +G+ M  
Sbjct  295  SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSR  354

Query  355  YTQRNLYKLMSVVYIERIPTVS----MVDG--KEVRGVRLKEEA--LSPTRIAGVFGKNF  406
             T+ N+ + M+V++IE+ PT +    MV+G  K+V    +KE+   +S + I + +G +F
Sbjct  355  ATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQF  414

Query  407  RTTGLE-KTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGvtavvfsflftlv  465
            R TGL+ + E+ +L+ LLRAG+LAAPM F EE  IGPSLGA+N+ +GV A + + LF  +
Sbjct  415  RITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSL  474

Query  466  fftIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINER  525
            F+   YR FG+I+++AL FN+++++A+MSL+GAT+TLPG+AG+ L++G++VDANVLI  R
Sbjct  475  FIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSR  534

Query  526  IREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIF  585
            IREE+ +GM  + AI  G+D+A ++ILDANLT L+VG  L+A GTGP+KGFA+TM +GIF
Sbjct  535  IREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIF  594

Query  586  ASMFTAITVSRSLSALIYGTRKNLKSL  612
            +SMFTAI V+R++  LIYG R ++K L
Sbjct  595  TSMFTAIMVTRAMVNLIYGGR-DFKKL  620

496) secD in NC_007973


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  361 bits (1355),  Expect = 8e-101, Method: Compositional matrix adjust.
 Identities = 264/631 (42%), Positives = 430/631 (69%), Gaps = 42/631 (6%)

Query  16   MNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDLSMQKHVEEILAQN  75
            +N+YP+WKY++IL  L +G+ Y+ PN++ + +A+Q+S+A ++++V  +   +    L++ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  76   QLQPDGVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDANDATYVVALNLLSGSPR  135
             +   +  +  +G++G +  R+   ++QL AKDV+ ++L  D     YVVALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLL--RLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  136  WLTALHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDARTLLRDKNIRHGGIDRD  195
            WL  + A PM LGLDL GGVHFLL+VDM  A+D +L    G+ ++LLR  ++R  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  196  GERLTVRFSNGDDAERARGILADNLRELAFT---MDGTNIVG-TFTEAARKTVQDGAVKQ  251
            G+ + + F+++ + E+AR+++   + ++ +T   ++G  ++  ++T A    +++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  252  NITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDVR  311
            N+TT++NRVNELGVAEP++Q+QG++RIVV+LPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG--P  292

Query  312  NPRPGDPVPFGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGG  371
            +   G    F    F +G  ++  + + +I+TGD++  A A+FD++ RP VNI+LD++GG
Sbjct  293  DDSKGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGG  349

Query  372  RMLRDVSRENIGKPMGIVLFE------------------------KGKGEVLTVATIQSE  407
             ++   +R N+G++M+++++E                        K    ++++ATIQS 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  408  LGSSFQITGSYSTEAANDlalllragslaaPMEIIEERTIGPSLGADNIQKGFDSVAYGF  467
            LGS F+ITG  +   +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG D+   G 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  468  AAIAVFMVLYYMLFGVFSvialgvnllllvavlsmlqaTLTLPGIAAIALVLGMAIDANV  527
              +++F++  Y +FG+++ +AL+ N+++L+A++S+L ATLTLPGIA+I L +GMA+DANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  528  LINERIREELRAGASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVH  587
            LI  RIREE+  G + Q +I+ GF+RA ++ILD+N+TTL+ G  L+A G+GPV+GFAV  
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  588  CLGILTSMFSAVFFNRGLVNLWYGRK--KKL  616
             LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

497) Acav_4576 in NC_015138


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  361 bits (1355),  Expect = 8e-101, Method: Compositional matrix adjust.
 Identities = 258/636 (41%), Positives = 438/636 (69%), Gaps = 47/636 (7%)

Query  1    MNRYPVWKYAilvvvllvgilYSLPNVFGEAPavqvssakasvkvdasLQRRVEEALQGA  60
            +N+YP+WKY +++ VL+VG++YS PN++ + +A+Q+S+A ++++V  +   R   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GITPDAVSL--DGNSVRARFDTPDTQLKAKDVIQKALVPDAADPQYIVALNLVSRSPAWL  118
            GI   A SL  +G++   R+   + QL AKDV++KAL     + +Y+VALNL   +P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-----GDDYVVALNLARTTPNWL  116

Query  119  TALHAQPVYLGLDLRGGVHFMLQVDMQAALTKKAESFAGDLRTFMRDRNIRHGGISRDGQ  178
              + A P+ LGLDL GGVHF+L+VDM+ A+  +   + G++++++R  ++R  ++++ G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  TIEVRLRDEAAATATRNLISDQFPDLVATSSPDGQGVIVRATIKPEALRKVQDQALKQNM  238
             I++ + D+A    +R L+   F D+  T++      ++R ++ P  L  +++ ++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  TTLHNRINELGVAEPVIQQQGTDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDESTEAR  298
            TT++NR+NELGVAEP++Q+QG++RIVV+LPGVQDTA AK ILG+TA LE R+   + +++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  299  GAERGSGPVPFGSERYPDRNG--QFVIVKKQVILTGENLTDAQPGFDGQTQEPTVNLTLD  356
            G+          +E +  R+G      V + +I+TG+++TDA+++FD + + P VN+ LD
Sbjct  297  GT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  357  AKGARIFKDITRENIGKRMAIVLFE------------------------KGKGEVVTAPV  392
            + G+ +    TR N+G+ MA++++E                        K    +++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  393  IRSEIGGGRVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHS  452
            I+S + G++ +I+G    +E+++ +LLLRAG+LAAPM + EE TIGPSLGADNI++G+++
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  453  VVWGMVAIAVFMCVYYALFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVA  512
             +WGM+ +++F+   Y +FG+++T+AL+ N++ML+A++S+L ATLTLPGIA++ L++G+A
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  513  IDSNVLINERIREELRAGVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRG  572
            +D+NVLI  RIREE+  G++ Q AI  G++RA ++ILD+N+TTL+ G  L+A G+GPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  573  FAVVHCLGILTSMFSAVFFSRGLVNLWYGRK--KKL  606
            FAV   LGI+TSMF+A+  +R++VNL YG +  KKL
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

498) secD in NC_006513


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  360 bits (1354),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 287/630 (46%), Positives = 434/630 (69%), Gaps = 43/630 (6%)

Query  1    MNRYPLWKNiliglvlffgliYTLPNFYGEVPAVQVSSGKATLKLDPALVAPIEQTLRDA  60
            +N+YPLWK +LI  VL  G+IY+ PN+Y + +A+Q+S++ ++L++  A V    ++L DA
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   EVPY--DGLFVDGNSIRVRLGSTEDQLRAKDSIEKRLNPDPSDPSYIVALNLLSASPTWL  118
             +P    +L  +G++  +RL+  EDQL AKD + K L  D     Y+VALNL  ++P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TAIHALPMYLGLDLRGGVHFLLEVDMPGAITKRLDATAGDLRTLLRDKDVRHAGIVREGN  178
              + A PM LGLDL GGVHFLLEVDM  AI  RL    G++++LLR   VR  ++ + GN
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  TVQLRFRDAAQREAARNAILNSTRDLQLVDRD-DGSTDLKLIATLTPVAQQTIRDFAIKQ  237
             +QL F D A+RE AR  + ++  D+++   + +G   L++  +LTP     IR+++IKQ
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRM--ALTPAKLAEIREYSIKQ  234

Query  238  NITTLHNRINELGVAEPVIQQQGANRIVVQLPGVQDVAKAKDILGRTATLEVRMVDDSPG  297
            N+TT++NR+NELGVAEP++Q+QGANRIVV+LPGVQD A AK ILG+TA LE R+  ++  
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP--  292

Query  298  ALEAALAGNVPFGTELYTERGGSPLLVRSQVVLTGDRLTDAQPGFDGQTNEPAVHLTLDA  357
              + + +    F    + E G ++  V   +++TGD++TDA+++FD +   P V++ LD+
Sbjct  293  --DDSKGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDG  346

Query  358  AGSRIFRDVTRENVGKRMAILLIE------------------------KGKGEVVTAPVI  393
             G+ +    TR NVG+ MA+++IE                        K    +++ + I
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  394  RSEIGGGRVQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAKGFNST  453
            +S +G+ + +I+G     E++++ALLLRAG+LAAPM + EERT+GPSLGADNI+KG +++
Sbjct  407  QSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  454  LWGFIAIAVFMIAYYMLFGlisaialaanllllvallsllqatltlPGIAAMALTLGMAI  513
            LWG + +++F++A Y +FGLI+++ALA N+++L+AL+SLL ATLTLPGIA++ LT+GMA+
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  514  DANVLINERIREELRNGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSGPVRGF  573
            DANVLI  RIREE+ NG++ Q AI  G+DRA+ +ILD+N+TTL+ G  L+  G+GPV+GF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  574  AVVHCLGILTSMFSAILISRMLVNLIYGRR  603
            AV   LGI+TSMF+AI+++R +VNLIYG R
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYGGR  615

499) secD in NC_017574


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  359 bits (1350),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 268/634 (43%), Positives = 430/634 (68%), Gaps = 43/634 (6%)

Query  1    MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVKVDLATQKQVEDLLAAA  60
            +N+YPLWKY++IL  L +GF+Y+ PN++ + +A+Q+S++ ++++V  A   +    L+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLTPNGVFFDQNGTSGSVRVRFADTDTQLKAKDVLARGLNSDPSDPTHIVALNLLSGSPR  120
             +  ++  + +NG +G +R+  +  + QL AKDV+ ++L  D      +VALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLAGDIRTQLRDKGVRHNGIERS  180
            WL  + A PM LGLDL GGVHFLL+VDM+ A+  +L    G++++ LR   VR  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GTTISIKFSNPDEADRARGLLADSTRELAFATDKTADGVTLTGTFTAAAMKEVQDNAVKQ  240
            G  I + F++  E ++AR+L+  +  ++ ++     +   L  ++T+A + E+++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARMADP--N  298
            N+ T++NRVNELGV+EP++Q+QG++RIVV+LPGVQDTA AK I+G+TA LE R++    +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  299  ATGIPRLTDPVPLGDELFTQGRGAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDG  358
            + G   + +        F +G  ++  +++ +I+TGD++  A A+FD++  P V+I LDG
Sbjct  295  SKGTTEMFE--------FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  359  QGGRMLRDISRDNIGKRMAIVLFE------------------------KGKGEVLTVATI  394
            +GG ++   +R N+G+ MA++++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  395  QSELGSRFQITGIGSVEsasdlalllragslaaPMEIIEERTIGPSLGADNIKKGFDSAA  454
            QS LGS+F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGPSLGADNI KG D++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  455  YGFAAISVFMMLYYMLFGAFSVVSLGVNVFLLIAILSMLQatltlpgiaaialalgmaid  514
             G   +S+F+M  Y +FG ++ V+L+ N+ +L+A++S+L ATLTLPGIA+I L++GMA+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  515  aNVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFA  574
            ANVLI  RIREE+ NG + Q AI+ GF+RA ++ILD+N+TTL+ G  L+A G+GPV+GFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  575  VVHCLGILTSMFSAVFFNRSLVNLWYGRK--KKL  606
            V   LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

500) secD in NC_008752


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  359 bits (1349),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 257/636 (41%), Positives = 438/636 (69%), Gaps = 47/636 (7%)

Query  1    MNRYPVWKYAilvivllvgilYSLPNVFGEAPavqvssakasvkvdasLQRRVEEALQGA  60
            +N+YP+WKY +++ VL+VG++YS PN++ + +A+Q+S+A ++++V  +   R   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GITPDVVSL--DGNSVRARFDTPDTQLKAKDVIQKALVPDAADPQYIVALNLVSRSPAWL  118
            GI     SL  +G++   R+   + QL AKDV++KAL     + +Y+VALNL   +P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-----GDDYVVALNLARTTPNWL  116

Query  119  TALHAQPVYLGLDLRGGVHFMLQVDMQAALTKKAESFAGDLRTFMRDRNIRHGGISRDGQ  178
              + A P+ LGLDL GGVHF+L+VDM+ A+  +   + G++++++R  ++R  ++++ G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  TIEVRLRDEAAATATRNLISDQFPDLVATSSPGGDGVIVRATIKPEALRKVQDQALKQNI  238
             I++ + D+A    +R L+   F D+  T++   +  ++R ++ P  L  +++ ++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  TTLHNRINELGVAEPVIQQQGTDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDESTEAR  298
            TT++NR+NELGVAEP++Q+QG++RIVV+LPGVQDTA AK ILG+TA LE R+   + +++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  299  GAERGSGPVPFGSERYPDRNG--QFIIVKKQVILTGENLTDAQPGFDGQTQEPTVNLTLD  356
            G+          +E +  R+G      V + +I+TG+++TDA+++FD + + P VN+ LD
Sbjct  297  GT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  357  AKGARIFKDITRENIGKRMAIVLFE------------------------KGKGEVVTAPV  392
            + G+ +    TR N+G+ MA++++E                        K    +++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  393  IRSEIGGGRVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHS  452
            I+S + G++ +I+G    +E+++ +LLLRAG+LAAPM + EE TIGPSLGADNI++G+++
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  453  VVWGMVAIAVFMCVYYALFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVA  512
             +WGM+ +++F+   Y +FG+++T+AL+ N++ML+A++S+L ATLTLPGIA++ L++G+A
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  513  IDSNVLINERIREELRAGVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRG  572
            +D+NVLI  RIREE+  G++ Q AI  G++RA ++ILD+N+TTL+ G  L+A G+GPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  573  FAVVHCLGILTSMFSAVFFSRGLVNLWYGRK--KKL  606
            FAV   LGI+TSMF+A+  +R++VNL YG +  KKL
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

501) secD in NC_014307


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  358 bits (1345),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 268/634 (43%), Positives = 431/634 (68%), Gaps = 43/634 (6%)

Query  1    MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAA  60
            +N+YPLWKY++IL  L +GF+Y+ PN++ + +A+Q+S++ ++++V  A   +    L+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLTPNGVFFDQNGTSGSVRVRFADTDTQLKAKDVLARGLNSDPSDPTHIVALNLLSGSPR  120
             +  ++  + +NG +G +R+  +  + QL AKDV+ ++L  D      +VALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLAGDIRTQLRDKGVRHNGIERS  180
            WL  + A PM LGLDL GGVHFLL+VDM+ A+  +L    G++++ LR   VR  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GTTISIKFSNPDEAERARGLLADSTRELTFASDKTADGVTLTGTFTAAAMKEVQDNAVKQ  240
            G  I + F++  E E+AR+L+  +  ++ +++    +   L  ++T+A + E+++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARMADP--N  298
            N+ T++NRVNELGV+EP++Q+QG++RIVV+LPGVQDTA AK I+G+TA LE R++    +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  299  ATGIPRLTDPVPLGDELFTQGRGAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDG  358
            + G   + +        F +G  ++  +++ +I+TGD++  A A+FD++  P V+I LDG
Sbjct  295  SKGTTEMFE--------FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  359  QGGRMLRDISRDNIGKRMAIVLFE------------------------KGKGEVLTVATI  394
            +GG ++   +R N+G+ MA++++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  395  QSELGSRFQITGIGSVEsasdlalllragslaaPMEIIEERTIGPSLGADNIKKGFDSAA  454
            QS LGS+F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGPSLGADNI KG D++ 
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  455  YGFAAISVFMVLYYMLFGAFSVVSLGVNVFLLIAILSMLQatltlpgiaaialalgmaid  514
             G   +S+F++  Y +FG ++ V+L+ N+ +L+A++S+L ATLTLPGIA+I L++GMA+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  515  aNVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFA  574
            ANVLI  RIREE+ NG + Q AI+ GF+RA ++ILD+N+TTL+ G  L+A G+GPV+GFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  575  VVHCLGILTSMFSAVFFNRSLVNLWYGRK--KKL  606
            V   LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

502) R2APBS1_1069 in NC_020541


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  356 bits (1338),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 267/638 (42%), Positives = 434/638 (69%), Gaps = 28/638 (4%)

Query  1    MNDFPRWKYALVALVMLFGIIYALPNAFPPVPAVQVTANRDAPPINQALQQKVQAALGAK  60
            +N +P WKY L+  V++ G+IY+ PN +P  +A+Q+++   A  + QA  ++   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   KIAV--TSVFVEGDHLLATFANSDVQKSGLDEIKATLGDGYTVAFKLQSNVPGWLGAIGA  118
             I+V  +S+  +G   L  +++ + Q ++ D ++ +LGD+Y VA++L    P WL  +GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  RSMPLGLDLQGGVHFLMQVDQKDAIEKQENSYADDIRSLLRQKNIRYESVTRSATSGQGI  178
             +M LGLDL GGVHFL++VD   AI+ + + Y +++++LLR+ ++RY S+ +    G+ I
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL---GNVI  178

Query  179  AVVLrsaadrstaadaiaNEYTDLNVANGASTGDRFVLNAVIKPEKLRELSRSAITQNLG  238
             + +   A+R  A   + + +TD++++ +   G   VL   + P KL E+   +I QNL 
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIP-VLRMALTPAKLAEIREYSIKQNLT  237

Query  239  TLRNRINALGVSEPLIQQQGDSRIVVELAGVQDPTEAKKLIGAVATLQYRPGIGQPGDAR  298
            T+RNR+N LGV+EPL+Q+QG +RIVVEL+GVQD +EAK+++G  A L++R G G P+D++
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG-PDDSK  296

Query  299  AVEAARTGNIPPDANLYYMRGDNRPVL-VSKQIIVTGNQLVDASSGIDQQSGTPKVDVTL  357
            +            ++++  R + RP   V + +I+TG+Q+ DA +++D++ G P+V++ L
Sbjct  297  GT-----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINL  344

Query  358  NAAGAKKMGDFTNANVGKPMAVLYVEQ----VYETKVVDG--KEVRVPKITE--TVINDA  409
            ++ G+  M+  T +NVG++MAV+++EQ     Y  ++V+G  K+V V  + E   +I+ A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  410  TIQSPFSKQFQTTGLGSAKEASDlalllkggalaaPMDIVEEGVIGASLGQDNIDKGFKa  469
            TIQSP++ QF+ TGL +  E+S+LALLL++G+LAAPM + EE  IG+SLG DNI KG  A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  470  vllglalvllaaaIYYKLFGLVADIALFFNLVILLAVMSLIGVTLTMPGVAGIVLTLGMA  529
             L G+ +V L     Y++FGL+A +AL FN+V+LLA+MSL+G TLT+PG+AGIVLT+GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  530  IDANVLICERVREELRNGSSPHAAIRAGYEKAWSTILDANVTHliaalalttmgtgaiKG  589
            +DANVLI  R+REE+ NG + + AI  G+++A ++ILDAN+T L+ +  L +MGTG++KG
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  590  FGVTLMIGILTSLFTSVTLTHAFTAAIHGHRKLKTLSV  627
            F+VT+ +GI+TS+FT++ +T+A    I G R +K L +
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

503) CtCNB1_4738 in NC_013446


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  356 bits (1336),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 258/637 (41%), Positives = 435/637 (69%), Gaps = 49/637 (7%)

Query  1    MNRYPVWKYAIIVIALLVGVLYTLPNFFGEAPAVQVSSAKSTVKVDNAVLQKVESALSAA  60
            +N+YP+WKY +I+  L+VG +Y+ PN++ + +A+Q+S+A ++++V +A +++   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   --SVKATSMSLEGTSVRARFDTPDEQLKAKDVIQKALISDPTDPSYIVALNLVSRSPDWL  118
              +VKA+S++ +G +   R+   ++QL AKDV++KAL  D     Y+VALNL   +P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TAIGAKPMYLGLDLRGGVHFMLQVDMAAALTKKAESYAGDLRSSMRDKNIRHGGVSRDGN  178
              +GA PM LGLDL GGVHF+L+VDM  A+  +   Y G++++ +R  ++R  ++++ GN
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  NVTIRVRDEATLTAARNLIADQFPDLAATSMPDGTGFKLV-ASIKPEALRKVQEQALKQN  237
             + +   D+A    AR L+   F D+  T+ ++  G+ ++  ++ P  L  ++E ++KQN
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITP-AELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  238  IVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDESAEA  297
            + T++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE R+   + ++
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  298  RAAEMGSGPVPFGSEKYLDRNG--QGIIVQKQVTLTGENLTDAQPGFDSQTQEPTVNLTL  355
            +++          +E +  R+G   +  V++ + +TG+++TDA+++FD + + P VN+ L
Sbjct  296  KGT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINL  344

Query  356  DAKGARIFKDVTRENVGKRMAIILFE------------------------KGKGEVVTAP  391
            D+ G+ +    TR NVG+ MA+I++E                        K    +++ +
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  392  VIRGEIGGGRVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIH  451
             I++ + G++ +I+G    +E+++ +LLLRAG+LAAPM + EE TIGPSLGADNI +G++
Sbjct  405  TIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  452  SVVWGMVAIAAFMCMYYMLFGVFSTialsvnvllllailsmlQATLTLPGIAAMALALGV  511
            + +WGM+ ++ F+   Y +FG+++T+AL+ N+++LLA++S+L ATLTLPGIA++ L++G+
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  512  AIDSNVLINERIREELRAGASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVR  571
            A+D+NVLI  RIREE+  G + Q AI  G++ A  +ILD+N+TTL+ G  L+A G+G V+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  572  GFAVVHCIGILTSMFSAVFFSRGLVNLWYGGK--KKL  606
            GFAV   +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

504) Y11_20851 in NC_017564


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  355 bits (1335),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 254/513 (50%), Positives = 374/513 (73%), Gaps = 32/513 (6%)

Query  1    MKLGLDLRGGVHFLMEVDMDTALG---KLQEQTMDTLRSDLREKNIPYTTVRKLDNYGVE  57
            MKLGLDL GGVHFL+EVDMD A++   K+ E  + +L   LR  ++ Y ++ +L+N  ++
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQ  179

Query  58   VRFRDDKTRDDAISYLSPRHRDLVIGS---NGSNTLKAVMSDERLREAREYAVQQNITIL  114
            + F DD  R++A + +     D+ I +   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  115  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDASVAA  174
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL  +  D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  175  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGSA  232
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  233  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINVATIQSRL  282
            MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS L
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPL  410

Query  283  GNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLWGLA  342
            G+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NIT+G++A LWG+ 
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  343  VSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANV  402
               LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  403  LINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVGTGSIKGFAITT  462
            LI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  463  AIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  495
            ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

505) YE105_C1099 in NC_015224


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  355 bits (1333),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 254/513 (50%), Positives = 374/513 (73%), Gaps = 32/513 (6%)

Query  1    MKLGLDLRGGVHFLMEVDMDTALG---KLQEQTMDTLRSDLREKNIPYATVRKLDNYGVE  57
            MKLGLDL GGVHFL+EVDMD A++   K+ E  + +L   LR  ++ Y ++ +L+N  ++
Sbjct  124  MKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRYRSLPQLGN-VIQ  179

Query  58   VRFRDDKTRDDAISYLSPRHRDLVIGS---NGSNTLKAVMSDERLREAREYAVQQNITIL  114
            + F DD  R++A + +     D+ I +   NG   L+  ++  +L E REY+++QN+T +
Sbjct  180  LGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTV  239

Query  115  RNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDASVAA  174
            RNRVN+LGVAEPLVQRQG++RIVVELPG+QDTA AK ILG TA LEFRL  +  D+    
Sbjct  240  RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK---  296

Query  175  SGRVPGDSEVKNTREG-RPVVLYKR-VILTGDHITDSTSSTDEYNQAQVNISLDSAGGSA  232
                 G +E+ + REG RP     R +I+TGD++TD+ +S DE  ++QVNI+LD+ GG  
Sbjct  297  -----GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  233  MSNFTKDNIGKPMATLFVE------YK----DSGKKDANGRAVLVKQEEVINVATIQSRL  282
            MS  T+ N+G++MA +F+E      Y     ++  KD   ++ +  +  +I++ATIQS L
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPL  410

Query  283  GNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLWGLA  342
            G+ FRITG++  +E+ +L+LLLRAG+L AP+ + EERTIGP+LG++NIT+G++A LWG+ 
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  343  VSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANV  402
               LF++  YR FG+IA+ AL  N+V+++++MSLL GATLT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  403  LINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVGTGSIKGFAITT  462
            LI  RI+EE  NG T+Q+AI EG+  A+++I+DAN+TTL+ + IL+A+GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  463  AIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI  495
            ++G+ TSMFTAI+ TRA+VNL+YGG+ ++KL I
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

506) Alide_4231 in NC_014910


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  355 bits (1335),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 258/636 (41%), Positives = 426/636 (67%), Gaps = 47/636 (7%)

Query  1    MNRYPVWKYailvialligalYTLPNFFGEAPAVQVSSAKATIKVDGALQRRVEEVLQSA  60
            +N+YP+WKY +++  L++G +Y+ PN++ + +A+Q+S+A ++++V  A   R    L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GVS--PDSVVFDGHSVRARFDTPDNQLKAKDAIEKALVPDPSDPPYIVALNLVSRSPDWL  118
            G++  + S+  +G +   R+   ++QL AKD + KAL  D     Y+VALNL   +P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TAINARPMYLGLDLRGGVHFMLQVDMQAAITKKAESYAGDLRTALREKNIRHGGISRDGQ  178
              + A PM LGLDL GGVHF+L+VDM+ AI  +   Y G++++ LR  ++R  ++++ G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  AVDIRVRDEATATAARNLVADQFPDLVVASSPDGEGLRLRATIKPEALRKVQEQALKQNM  238
             +++   D+A    AR LV   F D+ ++++       LR ++ P  L  ++E ++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  VTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDEGTEAR  298
             T++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE R+     +++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  299  AAEMGTGPVPFGDEKYLDRNG--QAVIVKKQVILTGENLTDAQPGFDGQTQEPTVNLTLD  356
            ++           E +  R+G   A  V + +I+TG+++TDA+++FD + + P VN+ LD
Sbjct  297  GT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  357  AKGSRIFKDVTRENIGKRMAIVLFE------------------------KGKGEVVTAPV  392
            + G+ +    TR N+G+ MA++++E                        K    +++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  393  IRSEIGGGRVQISGRMTTTEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIARGIHS  452
            I+S + G++ +I+G     E+++ ALLLRAG+LAAPM + EE TIGPSLGADNI++G+++
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  453  VVWGMAAIAAFMCVYYVLFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVA  512
             +WGM  ++ F+   Y +FG+++T+AL+ N++ML+A++S+L ATLTLPGIA++ L++G+A
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  513  IDSNVLINERIREELRagvapqaaiaaGYERAWATILDSNVTTLIAGLALLAFGTGPVRG  572
            +D+NVLI  RIREE+  G++ Q AI+ G++RA ++ILD+N+TTL+ G  L+A GTGPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  573  FAVVHCIGILTSMFSAVFFSRGLVNLWYGRK--KKL  606
            FAV   +GI+TSMF+A+  +R++VNL YG +  KKL
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

507) Alide2_4572 in NC_015422


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  355 bits (1335),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 258/636 (41%), Positives = 426/636 (67%), Gaps = 47/636 (7%)

Query  1    MNRYPVWKYailvialligalYTLPNFFGEAPAVQVSSAKATIKVDGALQRRVEEVLQSA  60
            +N+YP+WKY +++  L++G +Y+ PN++ + +A+Q+S+A ++++V  A   R    L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GVS--PDSVVFDGHSVRARFDTPDNQLKAKDAIEKALVPDPSDPPYIVALNLVSRSPDWL  118
            G++  + S+  +G +   R+   ++QL AKD + KAL  D     Y+VALNL   +P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TAINARPMYLGLDLRGGVHFMLQVDMQAAITKKAESYAGDLRTALREKNIRHGGISRDGQ  178
              + A PM LGLDL GGVHF+L+VDM+ AI  +   Y G++++ LR  ++R  ++++ G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  AVDIRVRDEATATAARNLVADQFPDLVVASSPDGEGLRLRATIKPEALRKVQEQALKQNM  238
             +++   D+A    AR LV   F D+ ++++       LR ++ P  L  ++E ++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  VTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDEGTEAR  298
             T++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE R+     +++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  299  AAEMGTGPVPFGDEKYLDRNG--QAVIVKKQVILTGENLTDAQPGFDGQTQEPTVNLTLD  356
            ++           E +  R+G   A  V + +I+TG+++TDA+++FD + + P VN+ LD
Sbjct  297  GT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  357  AKGSRIFKDVTRENIGKRMAIVLFE------------------------KGKGEVVTAPV  392
            + G+ +    TR N+G+ MA++++E                        K    +++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  393  IRSEIGGGRVQISGRMTTTEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIARGIHS  452
            I+S + G++ +I+G     E+++ ALLLRAG+LAAPM + EE TIGPSLGADNI++G+++
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  453  VVWGMAAIAAFMCVYYVLFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVA  512
             +WGM  ++ F+   Y +FG+++T+AL+ N++ML+A++S+L ATLTLPGIA++ L++G+A
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  513  IDSNVLINERIREELRagvapqaaiaaGYERAWATILDSNVTTLIAGLALLAFGTGPVRG  572
            +D+NVLI  RIREE+  G++ Q AI+ G++RA ++ILD+N+TTL+ G  L+A GTGPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  573  FAVVHCIGILTSMFSAVFFSRGLVNLWYGRK--KKL  606
            FAV   +GI+TSMF+A+  +R++VNL YG +  KKL
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

508) secD in NC_013861


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  355 bits (1333),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 280/635 (45%), Positives = 441/635 (70%), Gaps = 32/635 (5%)

Query  1    MQNKYPLWKNLMLIVIAVVGLVYAIPNLYTENPVVQISSETP---VDYDELKNQVENILN  57
            M NKYPLWK ++++ + VVG++Y+ PNLY +++ +QIS+ +    V   ++      + +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  58   KD-KLHYTSLVVQNEGVEVVFSSTDAQLLARDTIKNALGSQYTVALNLAPSTPGWLDAIH  116
             +  +  +SL  +  G  + +S  + QL A+D +++ALG +Y VALNLA +TP WL  + 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  AAPMKQGLDLRGGVHFLLEVDVESVISRR---YEGIMKNISQELRELGIRYTGIRFIPDK  173
            A+PMK GLDL GGVHFLLEVD++  I  R   YEG +K +   LR   +RY   R +P+ 
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKAL---LRKEKVRY---RSLPQL  174

Query  174  G--VELRFRDPQSMDNAFIGLKEKIPDLIFVKSKANN--GIMASVSPTELNTMRQNTIEQ  229
            G  ++L F D    ++A   ++  + D+ +  +  N    +  +++P+ L  +R+ +I Q
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  230  TMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLQFYLVDQDND  289
             ++ +RNRVNELGV+E++VQ+QGA R+ V+LPG+QD+A AK+ILG TA L+F L    +D
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  290  PQIAKQTGVVPVNDKLLMMDGYPILLKRQVVLSGDSITSAVSSYDQQTATPAVQIQLGGG  349
            ++ + +       ++       +  + R ++++GD +T A +S+D++ + P V+I+L+G 
Sbjct  295  SKGTTEMFEFREGGRP------AAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGH  347

Query  350  GESLFTKVTRENIGKRMAIVYVETKNNI----QTVNGVEKRIT----HREERVISAPVIQ  401
            G  L ++ TR N+G+ MA++++E +       Q VNGVEK +       + ++IS + IQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  402  NALGNNFQITGLTDSKEASNlalllragalpaaIYPIEERTVGPTLGKENIRRGIISLEV  461
            ++LG++F+ITGL +  E+S+LALLLRAG+L+A++Y  EERT+GP+LG +NI +G+ +   
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  462  GMGLILILMLSYYRFFGliadvalllnlvllsallsvidaTLTLPGIAGIVLTVGMAVDA  521
            GM ++ +++++ YRFFGLIA VAL +N+V+L AL+S+++ATLTLPGIAGIVLT+GMAVDA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  522  NVLIYERIREELRHGLSPQAAIYAGYERAFSTILDANITTLIVAIILFAVGTGPVRGFAV  581
            NVLI+ RIREE+ +G++ Q AI  G++RA+++ILDAN+TTL+V+ ILFA+GTGPV+GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  582  tlslglltsmltgitYTRAIVNWYYGGRTVKKLSI  616
            T+SLG++TSM+T+I  TRA+VN  YGGR  KKL I
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

509) secD in NC_010002


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  354 bits (1330),  Expect = 7e-99, Method: Compositional matrix adjust.
 Identities = 264/637 (42%), Positives = 436/637 (69%), Gaps = 49/637 (7%)

Query  1    MNRYPVWKYAIIVIALLVGVLYTLPNFFGEAPAVQVSSAKATVKVDNAVLHRVEEALKAA  60
            +N+YP+WKY +I+  L+VG +Y+ PN++ + +A+Q+S+A ++++V +A ++R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   D--VKPDVLTIEGTSVRARFNTPDEQLKAKDVIQKALIPDANDPAYIVALNLVSRSPQWL  118
            +  VK+  L+ +G +   R++  ++QL AKDV++KAL     +  Y+VALNL   +P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-----GDDYVVALNLARTTPNWL  116

Query  119  TAVGAKPMYLGLDLRGGVHFMLQVDMAAALTKKADSFAGDLRTSLRDKNIRHGGVSRNGN  178
              VGA PM LGLDL GGVHF+L+VDM  A+  +   + G++++ LR  ++R  ++++ GN
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  TVEIRVRDEAMLTAARNLVTDQFPDLAATSEPDGAGFKLL-ASIKPEALRKVQEQALKQN  237
             +++   D+A    AR LV   F D+  T+ ++  G+ +L  ++ P  L  ++E ++KQN
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITP-AELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  238  IVTLHNRINELGVAEPVIQQQGLDRIIVQLPGVQDTAKAKDILGRTATLEVRLVDESSEA  297
            + T++NR+NELGVAEP++Q+QG +RI+V+LPGVQDTA AK ILG+TA LE RL   + ++
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  298  RGAELGSGPVPFGSERYLDRNA--QAVIVQKQVVLTGENLTDAQPGFDSQTQEPTVNLVL  355
            +G+          +E +  R++   A  V++ +++TG+++TDA+++FD + + P VN+ L
Sbjct  296  KGT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINL  344

Query  356  DAKGARIFKDITRENVGKRMAIILFE------------------------KGKGEVVTAP  391
            D+ G+ +    TR NVG+ MA+I++E                        K    +++ +
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  392  VIRTEIGGGRVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIH  451
             I++ +G+ + +I+G    +E+++ ALLLRAG+LAAPM + EE TIGPSLGADNI +G++
Sbjct  405  TIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  452  SVVWGLVAIAAFMCVYYMLFGVIstvalsvnvllllailsmlqatlTLPGIAAMALALGV  511
            + +WG++ ++ F+   Y +FG+I+TVAL+ N+++LLA++S+L ATLTLPGIA++ L++G+
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  512  AIDSNVLINERIREELRGGVSPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGPVR  571
            A+D+NVLI  RIREE+  G++ Q AI  G++ A  +ILD+N+TTL+ G  L+A G+GPV+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  572  GFAVVHCIGILTSMFSAVFFSRGLVNLWYGRR--KKL  606
            GFAV   +GI+TSMF+A+  +R++VNL YG R  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

510) DelCs14_5693 in NC_015563


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  354 bits (1330),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 264/637 (42%), Positives = 436/637 (69%), Gaps = 49/637 (7%)

Query  1    MNRYPVWKYAIIVIALLVGVLYTLPNFFGEAPAVQVSSAKATVKVDNAVLHRVEEALKAA  60
            +N+YP+WKY +I+  L+VG +Y+ PN++ + +A+Q+S+A ++++V +A ++R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   D--VKPDVLTIEGTSVRARFNTPDEQLKAKDVIQKALIPDANDPAYIVALNLVSRSPQWL  118
            +  VK+  L+ +G +   R++  ++QL AKDV++KAL     +  Y+VALNL   +P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-----GDDYVVALNLARTTPNWL  116

Query  119  TAVGAKPMYLGLDLRGGVHFMLQVDMAAALTKKADSFAGDLRTSLRDKNIRHGGVSRNGN  178
              VGA PM LGLDL GGVHF+L+VDM  A+  +   + G++++ LR  ++R  ++++ GN
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  TVEIRVRDEAMLTAARNLVTDQFPDLAATSEPDGAGFKLL-ASIKPEALRKVQEQALKQN  237
             +++   D+A    AR LV   F D+  T+ ++  G+ +L  ++ P  L  ++E ++KQN
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITP-AELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  238  IVTLHNRINELGVAEPVIQQQGLDRIIVQLPGVQDTAKAKDILGRTATLEVRLVDESSEA  297
            + T++NR+NELGVAEP++Q+QG +RI+V+LPGVQDTA AK ILG+TA LE RL   + ++
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  298  RGAELGSGPVPFGSERYLDRNA--QAVIVQKQVVLTGENLTDAQPGFDSQTQEPTVNLVL  355
            +G+          +E +  R++   A  V++ +++TG+++TDA+++FD + + P VN+ L
Sbjct  296  KGT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINL  344

Query  356  DAKGARIFKDITRENVGKRMAIILFE------------------------KGKGEVVTAP  391
            D+ G+ +    TR NVG+ MA+I++E                        K    +++ +
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  392  VIRTEIGGGRVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIH  451
             I++ +G+ + +I+G    +E+++ ALLLRAG+LAAPM + EE TIGPSLGADNI +G++
Sbjct  405  TIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  452  SVVWGLVAIAAFMCVYYMLFGVIstvalsvnvllllailsmlqatlTLPGIAAMALALGV  511
            + +WG++ ++ F+   Y +FG+I+TVAL+ N+++LLA++S+L ATLTLPGIA++ L++G+
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  512  AIDSNVLINERIREELRGGVSPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGPVR  571
            A+D+NVLI  RIREE+  G++ Q AI  G++ A  +ILD+N+TTL+ G  L+A G+GPV+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  572  GFAVVHCIGILTSMFSAVFFSRGLVNLWYGRR--KKL  606
            GFAV   +GI+TSMF+A+  +R++VNL YG R  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

511) secD in NC_021033


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 258/638 (41%), Positives = 432/638 (68%), Gaps = 46/638 (7%)

Query  1    MNRYPLWKYLIVLFALLFGLTYTLPNIFGQTVAVQISSTNVTKKVDQNLLNFAEQTLKQA  60
            +N+YPLWKY+++L  L+ G+ Y+ PN++ +  A+QIS+++ + +V Q  ++ A ++L +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIPFENSVIQANGPNNNTIRIRFNSPNEQIQARGVLEKALNPNPEEPNYVVALNLLSATP  120
             IP   S +  NG       +R++  ++Q+ A++V+ KAL       +YVVALNL  +TP
Sbjct  62   GIPVKASSLAENGKGGL---LRLSKQEDQLPAKDVVRKALG-----DDYVVALNLARTTP  113

Query  121  TWLTSLGANPMALGLDLRGGVHFLLQVDMKGALNSRYNSLTTELRTFLRDGKVSFESIQL  180
             WL ++GA PM LGLDL GGVHFLL+VDM  A+++R +    E++++LR  KV + S+  
Sbjct  114  NWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQ  173

Query  181  EGTEIKAVFSSEEQAAKAQSIIRKRLPELTSELSETGGKFVLVNSISPTEIDRVQDTALK  240
             G  I+  F+ + +  +A++++RK + ++    +E  G  VL  +++P+ +  +++ ++K
Sbjct  174  LGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  241  QNIVTLHNRINELGVAEPIIQQQGNDRIVVQLPGVQDIAKAKDILGRTATLELRLVDDSP  300
            QN+ T++NR+NELGVAEP++Q+QG +RIVV+LPGVQD A AK ILG+TA LE+RL  ++ 
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD  293

Query  301  NALASLSSGVVPFGLERFKDSDGRDILLRRQVILTGENLEDAQSGRDPQKQIPTVNLTLD  360
            ++     +    F    F++++     + R +I+TG+++ DA+++ D + + P VN+ LD
Sbjct  294  DS----KGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  361  SKGSRIFRDVTRDNINKRMAIVLFE------------------------KGKGQVVTAPV  396
            + G+ +    TR N+ + MA++++E                        K   ++++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  397  IRDEIPNGQVQISGNMTPTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEENIRKGFRS  456
            I+  +  +Q +I+G     E++++ALLLRAG+LAAPM + EERTIGPSLG +NI KG  +
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  457  T-WVGFLIIAVFMIMYYRLIGVFSTIGLAFNVLLLIAVLSLIQATLTLPGIAAIALTLGM  515
            + W G L++++F++  YR++G+++T++LAFN+++L+A++SL+ ATLTLPGIA+I LT+GM
Sbjct  465  SLW-GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  516  AIDANVlinerireelreGANPQQAINIGFEKAWGTIFDSNITSLIVGLALLAFSGPGPI  575
            A+DANVLI  RIREE+ +G   Q+AI+ GF++A  +I+D+N+T+L+VG  L+A  G GP+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAM-GTGPV  582

Query  576  RGFAVVHVLGILTSMFSAVVGVRALVNLWYGRK--KKL  611
            +GFAV   LGI+TSMF+A++  RA+VNL YG +  KKL
Sbjct  583  KGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

512) TASI_1340 in NC_016043


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 258/638 (41%), Positives = 432/638 (68%), Gaps = 46/638 (7%)

Query  1    MNRYPLWKYLIVLFALLFGLTYTLPNIFGQTVAVQISSTNVTKKVDQNLLNFAEQTLKQA  60
            +N+YPLWKY+++L  L+ G+ Y+ PN++ +  A+QIS+++ + +V Q  ++ A ++L +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIPFENSVIQANGPNNNTIRIRFNSPNEQIQARGVLEKALNPNPEEPNYVVALNLLSATP  120
             IP   S +  NG       +R++  ++Q+ A++V+ KAL       +YVVALNL  +TP
Sbjct  62   GIPVKASSLAENGKGGL---LRLSKQEDQLPAKDVVRKALG-----DDYVVALNLARTTP  113

Query  121  TWLTSLGANPMALGLDLRGGVHFLLQVDMKGALNSRYNSLTTELRTFLRDGKVSFESIQL  180
             WL ++GA PM LGLDL GGVHFLL+VDM  A+++R +    E++++LR  KV + S+  
Sbjct  114  NWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQ  173

Query  181  EGTEIKAVFSSEEQAAKAQSIIRKRLPELTSELSETGGKFVLVNSISPTEIDRVQDTALK  240
             G  I+  F+ + +  +A++++RK + ++    +E  G  VL  +++P+ +  +++ ++K
Sbjct  174  LGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  241  QNIVTLHNRINELGVAEPIIQQQGNDRIVVQLPGVQDIAKAKDILGRTATLELRLVDDSP  300
            QN+ T++NR+NELGVAEP++Q+QG +RIVV+LPGVQD A AK ILG+TA LE+RL  ++ 
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD  293

Query  301  NALASLSSGVVPFGLERFKDSDGRDILLRRQVILTGENLEDAQSGRDPQKQIPTVNLTLD  360
            ++     +    F    F++++     + R +I+TG+++ DA+++ D + + P VN+ LD
Sbjct  294  DS----KGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  361  SKGSRIFRDVTRDNINKRMAIVLFE------------------------KGKGQVVTAPV  396
            + G+ +    TR N+ + MA++++E                        K   ++++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  397  IRDEIPNGQVQISGNMTPTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEENIRKGFRS  456
            I+  +  +Q +I+G     E++++ALLLRAG+LAAPM + EERTIGPSLG +NI KG  +
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  457  T-WVGFLIIAVFMIMYYRLIGVFSTIGLAFNVLLLIAVLSLIQATLTLPGIAAIALTLGM  515
            + W G L++++F++  YR++G+++T++LAFN+++L+A++SL+ ATLTLPGIA+I LT+GM
Sbjct  465  SLW-GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  516  AIDANVlinerireelreGANPQQAINIGFEKAWGTIFDSNITSLIVGLALLAFSGPGPI  575
            A+DANVLI  RIREE+ +G   Q+AI+ GF++A  +I+D+N+T+L+VG  L+A  G GP+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAM-GTGPV  582

Query  576  RGFAVVHVLGILTSMFSAVVGVRALVNLWYGRK--KKL  611
            +GFAV   LGI+TSMF+A++  RA+VNL YG +  KKL
Sbjct  583  KGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

513) BurJV3_1660 in NC_015947


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  353 bits (1324),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 280/638 (44%), Positives = 440/638 (69%), Gaps = 40/638 (6%)

Query  1    MLE-FPRWKyvvilivlalsalyalPNIYQKDPALQITANRGG-QIddalrdrvladlKT  58
            ML+ +P WKYV+IL VL ++ +Y+ PN+Y  D+A+QI++   + Q+ +A  DR    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGIT--TIGVEKEGESLIVRLPDLKAQSAASDALRDTVGEKYTVALNLASTVPDWLAKLG  116
            AGI   + ++  +G + ++RL+    Q +A D +R ++G+ Y VALNLA T P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARIAYQSVERRADNSIV  176
            + PM LGLDL GGVHF+L+VD   A+D RL  Y  +V++ LR  ++ Y+S+ + ++   V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN---V  177

Query  177  ANLSPSAGDDAAQRARTALVKAQPTLGYDVSGNRIT------VTVPDTEIAQISNGAIEQ  230
             +L+   GDDA +    ALV+   T +++++   +       +++  + +A+I + +I Q
Sbjct  178  IQLG--FGDDAEREQARALVRKTFT-DFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  231  NINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRMIGATATLEYRAVVDGNP  290
            N+ T+RNRVN+LGVAEP++QRQGA+R+VV+LPGVQDTAEAKR++G TA LE+R  +++ P
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGP  292

Query  291  TSVADKIASGRIPPEAKIYQRRDGGGPVL-LNKRVIVTGDQMVGAQAVTDSNSGSPAVSV  349
                +          + +++ R+GG P   +++ +I+TGDQ+ +A+A  D + G P V++
Sbjct  293  DDSKGT---------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNI  342

Query  350  TLNNVGGQRMFDFTSANVNKPMAVVYTERVPTVT----VVDGQE----VRGFKVNEEVIS  401
             L+  GG+ M   T +NV ++MAV++ E+ PT T    +V+G E    V+ FK +  +IS
Sbjct  343  NLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIIS  402

Query  402  VANINGVFGKNFQTTG-lqkkeaedlakllksgslaaPMDFVEERVVGPSLGAENVKNGM  460
            +A I++ +G +F+ TG   + E+ +LA LL++G+LAAPM F EER +GPSLGA+N+ +G+
Sbjct  403  LATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGV  462

Query  461  RavvfaflftlvffsvYYRMFGVITSIAMLFNLLIVVAVMSLFGATMTLPGFAGLALSVG  520
             A + + LF  +F+   YR FG+I+++A+ FN+++++A+MSL+GAT+TLPG+AG+ L++G
Sbjct  463  DASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMG  522

Query  521  LSVDANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFGTGPL  580
            ++VDANVLI  RIREE+  G+  + AI  G++RA  +ILDANLT L+VG  LFA GTGP+
Sbjct  523  MAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPV  582

Query  581  KGFALTMIIGIFASMFTAITVSRALATLIYGRR--KKL  616
            KGFA+TM +GIF+SMFTAI V+RA+  LIYG R  KKL
Sbjct  583  KGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

514) NH44784_034061 in NC_021285


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  352 bits (1323),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 270/641 (43%), Positives = 446/641 (70%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLIAVLIGLLYTLPNFYGESPAVQVSSAKATIKVDPAMLSRVEQILTDA  60
            +N+YPLWKY+ +L  +++G++Y+ PN+Y + +A+Q+S+A ++++V  A + R  + LTDA
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   KIPNEGVYYEQNGTLGTVRARFTSTDLQLQARDLIDKSLNTVQGDPHYTVALNLLPASPT  120
             IP  +    +NG  G +R  ++  + QL A+D++ K+L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRALGWFAPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLAADVRSVLRDQKVNVAGV  180
            W+R +G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V+++LR +KV   ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGMSVAASFANAQDRDRAISTLRSRLPDLEFTESEENGKLLLLGALNPAAVTRVQDSA  240
             + G  +  +F++  +R++A + +R  + D+E+T +E NG  +L  AL PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGSDRIVVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QG++RIVV+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQAALLGGSVPFGLERYSDRDG-RPIL-VRRQVVLTGENLQDAQPGRDSQTQQAAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + + V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR N+G+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIAGGQVQISGSMSSEEaadtalllragalaaPMSIIEERTIGPSLGADNIS  453
            ++ + I+S + G+Q +I+G  +  E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFHSTLYGFLAIAVFIIIYYHLFGVFSTVGltlnvllllallsmlqatltlPGIAAIAL  513
            KG +++L G L +++FI+  Y++FG+++TV+L++N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDSNVLINERIREELRNGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+D+NVLI  RIREE+ NG + Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGILTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI+TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

515) secD in NC_014640


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  351 bits (1319),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 269/640 (43%), Positives = 442/640 (70%), Gaps = 49/640 (7%)

Query  1    MNRYPLWKYITVLVAVIIGLLYTLPNFYGESPAVQVSSAKATIKVDPAMLNRVDQILTDA  60
            +N+YPLWKY+ +L  +++G++Y+ PN+Y + +A+Q+S+A ++++V  A ++R  + LTDA
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   KIPNEGVYYEQNGTLGTVRARFTSTDLQLQARDLIDRSLNTVAGDPHYTVALNLLPASPA  120
             IP  +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRALGWFAPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLAADVRSVLRDQKVNVAGV  180
            W+R +G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V+++LR +KV   ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGLAIAATFANADDRDRAISTLRSRLPDLEFTEREENGKPLLMAALNPAAVTRVQDSA  240
             + G  I   F++  +R++A + +R  + D+E+T  E NG P+L  AL PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIVVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RIVV+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  TPAAQAALLGGSVPFGLERYNDRDG-RPIL-VRRQVILTGENLQDAQPGRDSQTQQAAVH  358
               ++++          E ++ R+G RP   V R +I+TG+++ DA+++ D + + + V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILLFE------------------------NGKGEVV  394
            + LD+ G+ +    TR N+G+ MA++++E                        +    ++
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKII  401

Query  395  TAPVIRGEIAGGQVQISGSMSSEEaadtalllragalaaPMSIIEERTIGPSLGADNIAK  454
            + + I++ + G+Q +I+G  +  E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+K
Sbjct  402  SLATIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITK  460

Query  455  GFYSTLYGFLAIAVFIILYYHLFGVFSTIGltmnvllllallsmlqatltlPGIAAIALT  514
            G  ++L G L +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I LT
Sbjct  461  GVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLT  520

Query  515  LGMAIDSNVLINERIREELRAGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSG  574
            +GMA+D+NVLI  RIREE+  G + Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+G
Sbjct  521  MGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTG  580

Query  575  PIRGFAVVHVLGILTSMFSSVVGVRALANLWYGRK--KKL  612
            P++GFAV   LGI+TSMF++++  RA+ NL YG +  KKL
Sbjct  581  PVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

516) Galf_2292 in NC_014394


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  351 bits (1318),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 278/623 (45%), Positives = 431/623 (70%), Gaps = 36/623 (5%)

Query  1    MNRYPLWKYllilavllvgliYTLPNFFGESPAVQILPLRASMKADIALLGRVEAALKAG  60
            +N+YPLWKY+LILAVL+VG+IY+ PN++ + +A+QI    ++++   A ++R   AL  +
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLNTEMVALDGNSIKA--RFadtdlqlkakdllkaqlGEDYVVALNLLPRSPQWLTDMHA  118
             +     +L  N+  +  R++  + QL AKD+++  LG+DYVVALNL   +P+WL ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFLLQVDMKAALDKALEAATGDIRSALREENVAYSGVSREGNTLLVK  178
             PM LGLDL GGVHFLL+VDM  A+D  L    G++++ LR E+V Y ++++ GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FRDAAARAKGEAQLKQRFSDYALVDKELNGEFLLQATLKPEAEHRIGESAVQQNLLTLRN  238
            F D A R ++ A +++ F+D+ +   ELNG  +L+ +L P     I E +++QNL T+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPVIQQQGADRVVVQLPGVQDTARAKDILGRTATLEVRMVDDEHQVGAGGVA  298
            RVNELGVAEP++Q+QGA+R+VV+LPGVQDTA AK ILG+TA LE R+  + ++  +    
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT---  298

Query  299  PFGTEMFKDREG--VSILVKKQVMLTGERINDAQPGFDNQNNEAAVHINLDGVGARKFKD  356
               TEMF  REG   +  V + +++TG+++ DA+++FD++   + V+INLDG G+     
Sbjct  299  ---TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGELMSR  354

Query  357  ATRENVGKRMAIILFE------------------------KGRGEIVTAPVIREEIGGGR  392
            ATR NVG+ MA+I++E                        K    I++ + I+  +G+ +
Sbjct  355  ATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-Q  413

Query  393  VQISGRMTTEEAQDTalllragalaaPMEIVEERTVGPSLGADNIARGFNSTKIGFMLIA  452
             +I+G     E+ + ALLLRAG+LAAPM + EERT+GPSLGADNI++G +++  G ++++
Sbjct  414  FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVS  473

Query  453  VFMVAYYLMFGTISVValaanlllliallSMMQATLTLPGMAGIALTLGMAIDSNVLINE  512
            +F++A Y  FG I+ VALA N+++L+AL+S++ ATLTLPG+AGI LT+GMA+D+NVLI  
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFS  533

Query  513  RIREELRNGISPQAAIHAGYDNAFATIVDSNITNLIAGIALFLFGSGPIKGFAVVLCLGI  572
            RIREE+ NG++ Q AI  G+D A+++I+D+N+T L+ G  LF  G+GP+KGFAV + LGI
Sbjct  534  RIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGI  593

Query  573  LTSMFSSVLVSRAIVNLVYGRRA  595
            +TSMF++++V+RA+VNL+YG R 
Sbjct  594  FTSMFTAIMVTRAMVNLIYGGRD  616

517) secD in NC_010170


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  350 bits (1314),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 270/639 (43%), Positives = 440/639 (69%), Gaps = 47/639 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDNATLDRVQQILAAG  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V +A +DR  + L+ +
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIQATNVYYEQNGTLGTIRARFPSTDVQLQARDLLDKSLNTVADDPQYTVALNLLPASPP  120
             I        +NG  G +R  ++  + QL A+D++ K+L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRALGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLAADVRTTLRDEKVPSRGV  180
            W+R +G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V++ LR EKV  R++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERAGTSVLATFANTDDRDRAYTTLRTRLPDLQFTESEDSGHPALVGMLSPAAVTRVQDSA  240
             + G  +   F++  +R++A + +R  + D+++T +E +G P L   L+PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIVVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RIVV+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQTALAGGTVPFGLERYTDRDGRPLL-VRRQVILTGENLQDAQPGRDSQTQQAAVHL  359
            +  ++    G T  F    + + +GRP   V R +I+TG+++ DA+++ D + + + V++
Sbjct  292  PDDSK----GTTEMFE---FRE-GGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNI  342

Query  360  TLDSKGARIFRDVTRDNVGKRMAILLFE------------------------NGKGEVVT  395
             LD+ G+ +    TR NVG+ MA++++E                        +    +++
Sbjct  343  NLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIIS  402

Query  396  APVIRSEIAGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIAKG  455
             + I+S + G+Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+KG
Sbjct  403  LATIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG  461

Query  456  FHSTLYGFLAIAVFIILYYHLFGVFSTIGlsmnvllllallsmlqatltlPGIAAIALTL  515
             +++L G L +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I LT+
Sbjct  462  VDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTM  521

Query  516  GMAIDSNVLINERIREELRNGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP  575
            GMA+D+NVLI  RIREE+ NG + Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+GP
Sbjct  522  GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP  581

Query  576  IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            ++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  582  VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

518) secD in NC_020799


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  350 bits (1313),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 267/632 (43%), Positives = 430/632 (69%), Gaps = 39/632 (6%)

Query  1    MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAA  60
            +N+YPLWKY++IL  L +GF+Y+ PN++ + +A+Q+S++ ++++V  A   +    L+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLKPNGVFFDMNGTSGSVRVRFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPR  120
             +  ++  +  NG +G +R+  +  + QL AKD + ++L  D     Y+VALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLAGDIRTQLRDKGVRHSGIERS  180
            WL  + A PM LGLDL GGVHFLL+VDM+ A+  +L    G++++ LR   VR  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GTTISIKFTNPDEADRARGLLADSARELAFTVDKtadgatltgtftaaaMKEVQDNAVKQ  240
            G  I + F +  E ++AR+L+  +  ++ +T     + + L  ++T+A + E+++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNAT  300
            N+ T++NRVNELGV+EP++Q+QG++RIVV+LPGVQDTA AK I+G+TA LE RL+    +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----A  290

Query  301  GIPRATDPVPLGDELFTQGRGAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQG  360
            G   + +   + +  F +G  ++  +++ +I+TGD++  A A+FD++  P V+I LDG+G
Sbjct  291  GPDDSKGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  361  GRMLRDVSRDNIGKRMGIVLFE------------------------KGKGEVLTVATIQS  396
            G ++   +R N+G+ M+++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  397  ELGSRFQITGIGSVEsasdlalllragslaaPMEIIEERTIGPSLGADNIKKGFNSAAYG  456
             LGS+F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGPSLGADNI KG +++  G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  457  FAAISVFMVLYYMLFGAFSVVALGVNVFLLIAILSMLQatltlpgiaaialalgmaidaN  516
               +S+F++  Y +FG ++ VAL+ N+ +L+A++S+L ATLTLPGIA+I L++GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  517  VLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVV  576
            VLI  R+REE+ NG + Q AI+ GF+RA ++ILD+N+TTL+ G  L+A G+GPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  577  HCLGILTSMFSAVFFNRSLVNLWYGRK--KKL  606
              LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

519) secD in NC_003295


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  350 bits (1313),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 267/632 (43%), Positives = 430/632 (69%), Gaps = 39/632 (6%)

Query  1    MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAA  60
            +N+YPLWKY++IL  L +GF+Y+ PN++ + +A+Q+S++ ++++V  A   +    L+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLKPNGVFFDMNGTSGSVRVRFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPR  120
             +  ++  +  NG +G +R+  +  + QL AKD + ++L  D     Y+VALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLAGDIRTQLRDKGVRHSGIERS  180
            WL  + A PM LGLDL GGVHFLL+VDM+ A+  +L    G++++ LR   VR  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GTTISIKFTNPDEADRARGLLADSARELAFTVDKtadgatltgtftaaaMKEVQDNAVKQ  240
            G  I + F +  E ++AR+L+  +  ++ +T     + + L  ++T+A + E+++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNAT  300
            N+ T++NRVNELGV+EP++Q+QG++RIVV+LPGVQDTA AK I+G+TA LE RL+    +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----A  290

Query  301  GIPRATDPVPLGDELFTQGRGAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQG  360
            G   + +   + +  F +G  ++  +++ +I+TGD++  A A+FD++  P V+I LDG+G
Sbjct  291  GPDDSKGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  361  GRMLRDVSRDNIGKRMGIVLFE------------------------KGKGEVLTVATIQS  396
            G ++   +R N+G+ M+++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  397  ELGSRFQITGIGSVEsasdlalllragslaaPMEIIEERTIGPSLGADNIKKGFNSAAYG  456
             LGS+F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGPSLGADNI KG +++  G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  457  FAAISVFMVLYYMLFGAFSVVALGVNVFLLIAILSMLQatltlpgiaaialalgmaidaN  516
               +S+F++  Y +FG ++ VAL+ N+ +L+A++S+L ATLTLPGIA+I L++GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  517  VLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVV  576
            VLI  R+REE+ NG + Q AI+ GF+RA ++ILD+N+TTL+ G  L+A G+GPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  577  HCLGILTSMFSAVFFNRSLVNLWYGRK--KKL  606
              LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

520) secD in NC_010681


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  349 bits (1311),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 264/632 (42%), Positives = 434/632 (69%), Gaps = 39/632 (6%)

Query  1    MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAAN  60
            +N+YPLWKY ++L  LV+G++Y+ PNL+ + +A+Q+S++ +++++  + +     AL+  
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQKSLNSDPTDPQYIVALNLQSASPR  120
             I     ++ +++  + +R  L+  + QL  KD+++K+L  D     Y+VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDKNIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A++ +L    ++ ++LLR  ++R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  NQSVVINFADQATADNASKQLSRSIAELQWASQAGPDGGVQLVGTFTPAVQKAVQDAALK  240
             + + + F+D+A  ++A   + +++++++  + A  +G   L  ++TPA    +++ ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  241  QNITTLHNRVNELGVAEPVIQQQGADRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN  300
            QN+TT++NRVNELGVAEP++Q+QGA+RIVVELPGVQDTA AK I+G+TA LE RL+   +
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD  293

Query  301  THPNPSDPVPPGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  360
                 ++        F +G + +  + + +I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  294  DSKGTTEMFE-----FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  361  GRAVASISRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  396
            G  ++  +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  397  ELGDRFQITGQATPQGaadlalllragslaaPMDIIEERTIGPSLGADNIKKGFHSVVWG  456
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG ++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  457  FAAIAVFMIAYYMLFGVISmiglsvnlllliavlsmlQatltlpgiaaialalgmaidaN  516
               +++F++A Y +FG+I+ ++L+ N+++L+A++S+L ATLTLPGIA+I L++GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  517  VLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPVRGFAIV  576
            VLI  R+REE+ NG   Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV+GFA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  577  HCIGILTSMFSAVFFSRGIVNLWYGGK--KKL  606
              +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

521) secD in NC_007347


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  348 bits (1306),  Expect = 6e-97, Method: Compositional matrix adjust.
 Identities = 270/632 (43%), Positives = 434/632 (69%), Gaps = 43/632 (6%)

Query  1    MNRYPLWKYvvilvalaigiiYTLPNFFGEAPAVQVSSGKATVKVDLSMQKHVEEILAQN  60
            +N+YPLWKYV+IL  L +G+IY+ PN++ + +A+Q+S++ ++++V  +   +    L++ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLQPDGVFFDVSGQSGSVKARFRTTDDQLKAKDVLSRALNPDATDPTYVVALNLLSGSPR  120
             +   +  +  +G++G +  R+   +DQL AKDV+ +AL  D     YVVALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLL--RLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDARTLLRDKNVRHGGIDRD  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+D +L    G+ ++LLR  +VR  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GDKLTVRFNNADDANRARGILADNLRELAFA---MDGNNVVG-TFTEAARKAVQDAAVKQ  236
            G+ + + F +  + ++AR+++   + ++ ++   ++G  V+  ++T A    +++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  237  NITTLHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDAP  296
            N+TT++NRVNELGVAEP++Q+QGA+RIVV+LPGVQDTA AK I+G+TA LE RL+   +P
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGA--GP  292

Query  297  RNPRAGDPVPFGSELFTQGNGAPVVLKKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQG  356
             ++++   + F    F +G  ++  + + +I+TGD++  A A+FD++ RP VNI+LD++G
Sbjct  293  DDSKGTTEM-FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  357  GRVLRDVSRENIGKPMGIVLFE------------------------KGKGEVLTVATIQS  392
            G ++   +R N+G++M+++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  393  ELGSSFQITGSYSTEAANDlalllragslaaPMEIIEERTIGPSLGADNIQKGFDSVAYG  452
             LGS F+ITG  +   +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG D+   G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  453  FGAITVFMVLYYMLFGVFSVaalginlllliavlsmlqaTLTLPGIAAIALVLGMAIDAN  512
               +++F++  Y +FG+++  AL++N+++L+A++S+L ATLTLPGIA+I L +GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  513  VLINERIREELRAGASPQMAIAVGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVV  572
            VLI  RIREE+  G + Q AI+ GF+RA ++ILD+N+TTL+ G  L+A G+GPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  573  HCLGILTSMFSAVFFNRGLVNLWYGRK--KKL  602
              LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

522) Slit_0961 in NC_013959


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  347 bits (1302),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 264/618 (43%), Positives = 417/618 (68%), Gaps = 32/618 (5%)

Query  1    MNRYPLWKNLLIIVALMLGLVYALPNLYGEAPAVQVLPLRSNLKADEKLLARVEDALKAA  60
            +N+YPLWK +LI+  L++G++Y+ PNLY + +A+Q+    + L+  +  + R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLNPEAMSLDATSVKA--RFSNTDIQLKAKDVLHAQLGDDYMVALNLVPRSPQWMASLNA  118
             +   A SL   +  +  R+S+ + QL AKDV++  LGDDY+VALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFLLQIDMKAALDKALESDSGDIRSSLREADIPYSGVSRDASAITIK  178
             PM LGLDL GGVHFLL++DM  A+D  L    G++++ LR   + Y ++++ ++ I + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FRDADARSKGEDELKQRFGGLEFNTSEDGREFLLLASLKQQEQIRIQESAVQQNLVTLRN  238
            F D   R ++   +++ F ++E+  +E     +L  +L       I+E +++QNL T+RN
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPVIQQQGADRIVVQLPGVQDTARAKDILGRTATLEVRMVDDEHHLSAGGIA  298
            RVNELGVAEP++Q+QGA+RIVV+LPGVQDTA AK ILG+TA LE R+  + ++ S G   
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTE  300

Query  299  PFGTEIFKDRDGTPLLVKKSVILTGERINDAQPGFDSRNNEPAVHINLDAVGARKFKEAT  358
             F    F++ +  +  V +++I+TG+++ DA+++FD +   P V+INLD+ G+     AT
Sbjct  301  MFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGELMSRAT  356

Query  359  RENVGKRMAIILFE------------------------KGKGEVVTAPVIREEIGGGRVQ  394
            R NVG+ MA+I++E                        K    +++ + I+  +G+ + +
Sbjct  357  RSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-QFR  415

Query  395  ISGKMNTEEAKDTalllragalaaPMEIVEERTVGPSLGADNIARGFHSTQigfiaiaif  454
            I+G     E+ + ALLLRAG+LAAPM + EERT+GPSLGADNI++G +++  G + +++F
Sbjct  416  ITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLF  475

Query  455  miaYYLMFGGVSVlalganlllliallsmlqatlTLPGMAGIALTLGMAIDSNVLINERI  514
            ++A Y  FG ++ +AL+ N+++L+AL+S+L ATLTLPG+AGI LT+GMA+D+NVLI  RI
Sbjct  476  IMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRI  535

Query  515  REELRNGVPPQMAIHAGYENAFATILDSNITTLIAGIALFMFGSGPIKGFAVVLCLGILT  574
            REE+ NG+  Q AI  G++ A+++ILD+N+TTL+ G  LF  G+GP+KGFAV + LGI+T
Sbjct  536  REEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFT  595

Query  575  SMFSAVLVSRALVNLIYG  592
            SMF+A++V+RA+VNLIYG
Sbjct  596  SMFTAIMVTRAMVNLIYG  613

523) secD in NC_011071


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  347 bits (1304),  Expect = 8e-97, Method: Compositional matrix adjust.
 Identities = 277/635 (44%), Positives = 440/635 (70%), Gaps = 37/635 (5%)

Query  1    MLE-FPRWKyvvilivlalsalyalPNIYQKDPAIQITANRGG-QIddalrdrvladlKK  58
            ML+ +P WKYV+IL VL ++ +Y+ PN+Y  D+AIQI++   + Q+ +A  DR    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AG--VDAVGAEKEGESLIVRLPDLKAQSAASDALRDTVGENYTVALNLASTVPDWLANLG  116
            AG  V A +   +G + ++RL+    Q +A D +R ++G++Y VALNLA T P+WL N+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARIPYQSVERRADNSIV  176
            + PM LGLDL GGVHF+L+VD   A+D RL  Y  +V++ LR  ++ Y+S+ + ++   V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN---V  177

Query  177  ANLSPSagddaaqraraaLVKAQPTLGYDVSGNRIT------VTVPETEITQIANGAIEQ  230
             +L+ + + +  Q     LV+   T +++++   +       +++  + +++I + +I Q
Sbjct  178  IQLGFGDDAEREQARA--LVRKTFT-DFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  231  NINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRMIGATATLEYRAVVEGNA  290
            N+ T+RNRVN+LGVAEP++QRQGA+R+VV+LPGVQDTAEAKR++G TA LE+R  + + +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGP  292

Query  291  QDAITAGRIPPEAKVYQQRDG-RGPILLNKRVIVTGDQMVGAQAVTDSNSGSPAVSVTLN  349
            +D+  +      + +++ R+G R +  +++ +I+TGDQ+ +A+A  D + G P V++ L+
Sbjct  293  DDSKGT------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLD  345

Query  350  NVGGQRMFDFTSANVNKPMAVVYTERVPTVT----VVDGQE----VRGFKVNEEVISVAN  401
              GG+ M   T +NV ++MAV++ E+ PT T    +V+G E    V+ FK +  +IS+A 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  402  INGVFGKNFQTTG-lqkkeaedlakllksgslaaPMDFVEERVVGPSLGAENVKNGMRav  460
            I++ +G +F+ TG   + E+ +LA LL++G+LAAPM F EER +GPSLGA+N+ +G+ A 
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  461  vfaflftlvffsvYYRMFGVITSIAMLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSV  520
            + + LF  +F+   YR FG+I+++A+ FN+++++A+MSL+GAT+TLPG+AG+ L++G++V
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  521  DANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGF  580
            DANVLI  RIREE+  G+  + AI  G++RA  +ILDANLT L+VG  LFA GTGP+KGF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  581  ALTMIIGIFASMFTAITVSRALATLIYGRR--KKL  613
            A+TM +GIF+SMFTAI V+RA+  LIYG R  KKL
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

524) M301_2356 in NC_014207


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  346 bits (1301),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 262/632 (42%), Positives = 429/632 (68%), Gaps = 39/632 (6%)

Query  1    MNRYPMWKNILVAVMILIGLIYTIPNFFGESPAVQITPAKSTTKLDSALLDKVEDIFKQE  60
            +N+YP+WK +L+  ++++G+IY+ PN++ + +A+QI+ A ++ ++  A +D+    + + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   KIEY--DGVYQDARGVKARFKNTDTQIRAKDVLQANLGTDYTVALNLLSRSPNWLRSLGA  118
             I     ++ ++++G   R+ + + Q+ AKDV++  LG DY VALNL   +PNWLR++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  KPMYLGLDLRGGVHFLMQVDMKAALSKAAERFVGDFKIALRKERISYVGVSREGETVQIH  178
             PM LGLDL GGVHFL++VDM  A+      + G+ K  LRKE++ Y ++++ G+ +Q+ 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FNNAEELTKAHAVIAKEYPNLTLEESTIGEEKILKASLNLVEQKSIQDFAIKQNIQTLHN  238
            F +  E  +A+A++ K + ++ +  + +    +L+ +L       I++++IKQN+ T++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RINELGVAEPIIQQQGADRVVVQLPGVQDTAKAKEILGRTATLEIRMVDEEKSDAATLEK  298
            R+NELGVAEP++Q+QGA+R+VV+LPGVQDTA AK ILG+TA LE+R+        +T E 
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEM  301

Query  299  AEKGQAPIGDDVFKNRDGRAVLVKKSVVLTGDYITDAGPGVDSQSGRSTVNVTLDARGAR  358
             E          F++ +  A  V +++++TGD +TDA ++ D + GR+ VN+ LD++G+ 
Sbjct  302  FE----------FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGE  350

Query  359  IFQQVTRENVGKRMAILLIE------------------------KGSTEVITAPTINEEI  394
            +  + TR NVG+ MA+++IE                        K    +I+ +TI+  +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  395  GGGRVQISGMANTQEATDIalllragalaaPMDIVEERTVGPSMGQDNINRGIHSTLWGF  454
            G+ + +I+G+    E++++ALLLRAG+LAAPM + EERT+GPS+G DNI +G++++LWG 
Sbjct  411  GS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  455  AAIAVMMMIYYVAFGAVSVTalainllllvailsmlqatltlpglaaialalgmaidaNV  514
              +++ +M  Y  FG ++  ALA+N+++L+A++S+L ATLTLPG+A+I L++GMA+DANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  515  LINERIREELRNGNTPQASIHAGYERAWDTILDSNVTTLIAGLALFMFGTGPIKGFAVVH  574
            LI  RIREE+ NG T Q +I  G++RA  +ILD+N+TTL+ G  LF  GTGP+KGFAV  
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  575  VLGILTSMFSAVLVSRAIVNLIYGYRRKLTKL  606
             LGI+TSMF+A++V+RA+VNLIYG  R + KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYG-GRDFKKL  620

525) secD in NC_010943


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  346 bits (1298),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 277/635 (44%), Positives = 440/635 (70%), Gaps = 37/635 (5%)

Query  9    MLE-FPRWKyvvilivlalsalyalPNIYQKDPALQITANRGG-QIddalrdrvladlKT  66
            ML+ +P WKYV+IL VL ++ +Y+ PN+Y  D+A+QI++   + Q+ +A  DR    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  67   AG--VTPVGVEKEGESLIVRLPDLKAQSAASDALRDTVGEKYTVALNLASTVPDWLANLG  124
            AG  V + ++  +G + ++RL+    Q +A D +R ++G+ Y VALNLA T P+WL N+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  125  GRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARIAYQSVERRADNSIV  184
            + PM LGLDL GGVHF+L+VD   A+D RL  Y  +V++ LR  ++ Y+S+ + ++   V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN---V  177

Query  185  ANLSPSagddaaqraraaLVKAQPTLGYDVSGNRIT------VTVPETEIAQIANGAIEQ  238
             +L+ + + +  Q     LV+   T +++++   +       +++  + +A+I + +I Q
Sbjct  178  IQLGFGDDAEREQARA--LVRKTFT-DFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  239  NINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRMIGATATLEYRAVVEGNA  298
            N+ T+RNRVN+LGVAEP++QRQGA+R+VV+LPGVQDTAEAKR++G TA LE+R  + + +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGP  292

Query  299  QDAIDSGRIPPEAKVYQRRDGGGPIL-LNKRVIVTGDQMVGAQAVTDSTSGAPAVSVTLN  357
            +D+ ++      + +++ R+GG P   +++ +I+TGDQ+ +A+A  D   G P V++ L+
Sbjct  293  DDSKGT------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDE-HGRPQVNINLD  345

Query  358  NVGGQRMFDFTSANVNKPMAVVYTERVPTVT----LVDGQE----VRGFKVNEEVISVAN  409
              GG+ M   T +NV ++MAV++ E+ PT T    +V+G E    V+ FK +  +IS+A 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  410  INGVFGKNFQTTG-lqkkeaddlakllksgslaaPMDFVEERVVGPSLGAENVKNGMRav  468
            I++ +G +F+ TG   + E+ +LA LL++G+LAAPM F EER +GPSLGA+N+ +G+ A 
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  469  vfaflftlvffsvYYRMFGVITSIAMLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSV  528
            + + LF  +F+   YR FG+I+++A+ FN+++++A+MSL+GAT+TLPG+AG+ L++G++V
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  529  DANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGF  588
            DANVLI  RIREE+  G+  + AI  G++RA  +ILDANLT L+VG  LFA GTGP+KGF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  589  ALTMIIGIFASMFTAITVSRALATLIYGRR--KKL  621
            A+TM +GIF+SMFTAI V+RA+  LIYG R  KKL
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

526) secD in NC_007951


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  346 bits (1298),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 261/632 (42%), Positives = 433/632 (69%), Gaps = 39/632 (6%)

Query  1    MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAAN  60
            +N+YPLWKY ++L  LV+G++Y+ PNL+ + +A+Q+S++ +++++  + +     AL+  
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQKSLNSDPSDPQYIVALNLQSASPR  120
             I     ++ +++  + +R  L+  + QL  KD+++K+L  D     Y+VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDSNIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A++ +L    ++ ++LLR  ++R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  NQTVVINFADQATADIASKQLGRSISELQWASQTGPDGGVQLVGTFTPTVQKAVQDAALK  240
             + + + F+D+A  + A   + +++++++  + +  +G   L  ++TP+    +++ ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  241  QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN  300
            QN+TT++NRVNELGVAEP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+   +
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD  293

Query  301  THPNPSDPVPPGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  360
                 ++        F +G + +  + + +I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  294  DSKGTTEMFE-----FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  361  GRAVASVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  396
            G  ++  +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  397  ELGDRFQITGQATPQGaadlalllragslaaPMDIIEERTIGPSLGADNIRKGFHSVVWG  456
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG ++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  457  FAAIAVFMIAYYMLFGVISmiglsvnlllliavlsmlQatltlpgiaaialalgmaidaN  516
               +++F++A Y +FG+I+ ++L+ N+++L+A++S+L ATLTLPGIA+I L++GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  517  VLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPVRGFAIV  576
            VLI  R+REE+ NG   Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV+GFA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  577  HCIGILTSMFSAVFFSRGIVNLWYGGK--KKL  606
              +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

527) secD in NC_012856


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 267/634 (43%), Positives = 428/634 (68%), Gaps = 41/634 (6%)

Query  1    MNRYPLWKYIVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVKVDLNVQKQVESLLAAA  60
            +N+YPLWKY++IL  L +GF+Y+ PN++ + +A+Q+S++ ++++V      +    L+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   SIRPDGVFFDNNGTSASVRVRFADTDTQLKAKDILARGLNTDQADPTYIVALNLLPGSPR  120
            +I   +  + +NG ++ +R+  +  + QL AKD++ ++L  D     Y+VALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLSGAPFFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDSLAGDIRTQLRDKGIRHSGID  180
            WL      A PM LGLDL GGVHFLL+VDM+ A+  +L    G++++ LR   +R  ++ 
Sbjct  115  WLRNVG--ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLP  172

Query  181  RNGNTITIKFSTPddadrartlladSTRELAYTVDKSADSATLTGTFTAAAMKEVQDNAV  240
            + GN I + F+   + ++AR+L+  +  ++  T     + + L  ++T+A + E+++ ++
Sbjct  173  QLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  241  KQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPN  300
            KQN+ T++NRVNELGVAEP++Q+QG++RIVV+LPGVQDTA AK I+G+TA LE RL+   
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  301  APLVPRAGDPVPLGDELFTQGRSAPVLLQKQVIFTGDRITSASAGFDQNHNSSVDITLDG  360
                  + +   + +  F +G  ++  +++ +I+TGD++T A A+FD++  + V+I LDG
Sbjct  293  DD----SKGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  361  QGGRMLRDVSRDNIGKRMGIVLFE------------------------KGKGEVLTVATI  396
            +GG ++   +R N+G+ M+++++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  397  QSELGSRFQITGMGSTEaasdlalllragslaaPMEIIEERTIGPSLGADNIKKGFDSAL  456
            QS LGS+F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGPSLGADNI KG D++L
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  457  YGFLAISVFMVLYYMLFGAFSVAALGVNVFLLIALLSMLQatltlpgiaaialalgmaid  516
             G L +S+F++  Y +FG ++  AL+ N+ +L+AL+S+L ATLTLPGIA+I L++GMA+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  517  aNVLINERVREELRGGASAQMAIAAGFDRAWATILDSNVTTLIAGLALIAFGSGPVRGFA  576
            ANVLI  R+REE+  G + Q AI+ GFDRA ++ILD+N+TTL+ G  L+A G+GPV+GFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  577  IVHCLGIGTSMFSAVFFNRGLVNLWYGRK--KKL  608
            +   LGI TSMF+A+   R++VNL YG +  KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

528) secD in NC_020516


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  345 bits (1294),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 277/635 (44%), Positives = 431/635 (68%), Gaps = 44/635 (6%)

Query  1    MNRYPLWKNiliglvlffgliYTLPNFFGEVPAVQVSSGKATLKLDAASLSGSIEQALRD  60
            +N+YPLWK +LI  VL  G+IY+ PN++ + +A+Q+S++ ++L++  A +     +AL D
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVD-RAAKALTD  60

Query  61   AQIP--STGLFVDANSIRVRVADTDTQLRAKDAIEKRLNPDPRDPTYVVALNLLSASPNW  118
            A IP  +++L  ++++  +R++  + QL AKD + K L  D     YVVALNL  ++PNW
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNW  115

Query  119  LTAIHALPMYLGLDLRGGVHFLLEVDMPGAVTKRLDATAGDLRTLLRDKNVRHAGITREG  178
            L  + A PM LGLDL GGVHFLLEVDM  A+  RL    G++++LLR  +VR  ++ + G
Sbjct  116  LRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG  175

Query  179  NSVQLRFRDAGQRDAARSAIQGSTadlqladrddaaddlklvatlSQAAQKNIRDFAIKQ  238
            N +QL F D ++R+ AR+ ++  T         +  +   L  +L+ A   +IR+++IKQ
Sbjct  176  NVIQLGFGDDAEREQARALVR-KTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  239  NISTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDVAKAKDILGRTATLEVRLVDETPG  298
            N++T++NR+NELGVAEP++Q+QG +RIVV+LPGVQD A AK ILG+TA LE RL      
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP--  292

Query  299  ALDAALAGNVPFGTELYKERGGAPVLVKNQVVLTGDRLTDAQPGFDGQSHEAAVHLTLDA  358
              D + +    F    ++E G ++  V   +++TGD++TDA+++FD +++ + V++ LD+
Sbjct  293  --DDSKGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDG  346

Query  359  AGSRIFRDVTRENIGKRMAILLIE------------------------KGKGEVVTAPVI  394
             G+ +    TR N+G+ MA+++IE                        K    +++ + I
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  395  RSEIGGGRVQISGRMTTTEATDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAKGFHST  454
            +S + G++ +I+G     E++++ALLLRAG+LAAPM + EERT+GPSLGADNI+KG +++
Sbjct  407  QSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  455  LWGFVAIATFMCIYYALFGFISVIalaanllllvallsllqatltlPGIAAMALTLGMAI  514
            LWG + ++ F+   Y +FG+I+ +ALA N+++L+AL+SLL ATLTLPGIA++ LT+GMA+
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  515  DANVLINERIREELRNGVSPQAAIHAGYERAFDTILDSNITTLIAGIALLVFGSGPVRGF  574
            DANVLI  RIREE+ NG++ Q AI  G++RA+ +ILD+N+TTL+ G  L+  G+GPV+GF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  575  AVVHCLGILTSMFSAILVSRMLVNLIYGRR--RKL  607
            AV   LGI+TSMF+AI+V+R +VNLIYG R  +KL
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

529) secD in NC_014311


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  345 bits (1294),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 269/632 (43%), Positives = 430/632 (69%), Gaps = 39/632 (6%)

Query  1    MNRYPLWKYLVILMALAIGFLYTLPNFFGEAPAVQVSSGKATVKVDLATQKQVESLLAAA  60
            +N+YPLWKY++IL  L +GF+Y+ PN++ + +A+Q+S++ ++++V  A   +    L+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLKPDGVFFDLNGTSGSVRVRFADTDTQLKAKDVLTHGLNNDPTDPTYIVALNLLSGSPR  120
             +   +  +  NG +G +R+  +  + QL AKDV+  +L +D     Y+VALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTSIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLAGDIRTQLRDKGIRHNGIERS  180
            WL ++ A PM LGLDL GGVHFLL+VDM+ A+  +L    G++++ LR   +R  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GSTIAIKFGSPddadrarslladsarELAFTVDKTADGATLTGTFTDAAKKEVQDNAVKQ  240
            G+ I + FG   + ++AR+L+  +  ++ +T     + + L  ++T A   E+++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNAT  300
            N+ T++NRVNELGV+EP++Q+QG++RIVV+LPGVQDTA AK I+G+TA LE RL+    +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----A  290

Query  301  GIPRATDPVPLGDELFTQGRGAPVLLQKQVIFTGDRINSASAGFDQNHSPSVDITLDGQG  360
            G   + +   + +  F +G  ++  +++ +I+TGD++  A A+FD++  P V+I LDG+G
Sbjct  291  GPDDSKGTTEMFE--FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  361  GRMLRDVSRDNIGKRMGIVLFE------------------------KGKGEVLTVATIQS  396
            G ++   +R N+G+ M+++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  397  ELGSRFQITGIGTVEsasdlalllragslaaPMEIIEERTIGPSLGADNIKKGFDSAAYG  456
             LGS+F+ITG+     +S+LALLLRAG+LAAPM + EERTIGPSLGADNI KG D++  G
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  457  FAAISVFMVLYYMLFGLFSVVALGVNVFLLIAILSMLQatltlpgiaaialalgmaidaN  516
               +S+F++  Y +FGL++ VAL+ N+ +L+A++S+L ATLTLPGIA+I L++GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  517  VLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVV  576
            VLI  R+REE+ NG + Q AI+ GF+RA ++ILD+N+TTL+ G  L+A G+GPV+GFAV 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  577  HCLGILTSMFSAVFFNRSLVNLWYGRK--KKL  606
              LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

530) secD in NC_017513


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  344 bits (1290),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 252/629 (41%), Positives = 429/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQSKVDAALQNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

531) PT7_2069 in NC_015458


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  344 bits (1293),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 262/632 (42%), Positives = 432/632 (69%), Gaps = 43/632 (6%)

Query  1    MNRYPLWKYLTVLAALLIGMLYTLPNFFGESPAVQIAGAKSTVKVDTAVLSRVEDILAKN  60
            +N+YPLWKY+ +LA L++G +Y+ PN++ + +A+QI+GA ++++V  A + R    L+  
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NISATGAYFEQNGPIGTVRVRFETTDVQLKAKDLIEKSLNPDPSNPDFTVALNLLPSSPN  120
             I+  ++ + +NG  G +R+     + QL AKD++ K+L  D     + VALNL  ++PN
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALGARPMYLGLDLRGGVHFLLQVDMQGALTGRYDSLASDVRNTLREANIESGNVERA  180
            WL  +GA PM LGLDL GGVHFLL+VDM+ A+ +R     ++V+  LR  ++   ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DMSVVASFGSADARDNAASELRRSMPDMVFANSGENGGQFLLTGRLTETAVTQVQSYALR  240
            +  +  +FG    R++A + +R++  D  ++ +  NG   +L   LT + +++++ Y+++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIP-VLRMALTPAKLAEIREYSIK  233

Query  241  QNMTTLHNRINELGVAEPIIQQQGADRIVVQLPGVQDVAKAKDILGRTATLEIRMVDDSP  300
            QN+TT++NR+NELGVAEP++Q+QGA+RIVV+LPGVQD A AK ILG+TA LE+R+  ++ 
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD  293

Query  301  SAMAALAAGTVPFGLERYTDRDG-RPLL-LRRQVILTGENLQDAQPGRDQQSQQPSVNLT  358
             + ++          E +  R+G RP   + R +I+TG+++ DA+++ D++++ P VN+ 
Sbjct  294  DSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNIN  343

Query  359  LDSKGSRIFRDVTRNNINKRMAIVLFEQGHGEVVTAPVIRS---EIP-------------  402
            LD+ G+ +    TR+N+ + MA++++EQ      T  ++ +   ++P             
Sbjct  344  LDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISL  403

Query  403  -------GGQVQISGSMTAQEaadtalllragalaaPMEIIEERTIGPSLGADNIRQGFD  455
                   G+Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI +G D
Sbjct  404  ATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  456  STLYGFIAIAIFIMLYYHLMGMFSTIGlafnvllllavlsmlqatlTLPGIAAIALTLGM  515
            ++L G + +++FIM  Y++ G+++T++LAFN+++LLA++S+L ATLTLPGIA+I LT+GM
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  516  AIDANVLINERIREELRNGASPQQAIHLGFDRAWATIFDSNLTSLIVGVALLAFGSGPIR  575
            A+DANVLI  RIREE+ NG + Q+AI  GFDRA ++I+D+NLT+L+VG  L+A G+GP++
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  576  GFAVVHCIGILTSMFSSVVGVRGLVNLWYGNK  607
            GFAV   +GI+TSMF++++  R++VNL YG +
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGR  615

532) Pnuc_1791 in NC_009379


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  344 bits (1292),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 267/627 (43%), Positives = 422/627 (68%), Gaps = 42/627 (6%)

Query  1    MNRYPLWKYLVIAVALLIGGLYSLPNFYGEAPAVQVSSAKPTIKVDLATQSRVEKILADA  60
            +N+YPLWKY++I   L++G +YS PN+Y + +A+Q+S+A  +++V  A   R  K L+DA
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NISTTGMFFESAGSVGTIKARFNNTDIQLRARDLLQQKLNTDQNDPNYTIALNLLSNTPS  120
             I+  +  +   G  G +  R+++ + QL A+D++++ L  D     Y +ALNL   TP+
Sbjct  62   GIPVKASSLAENGKGGLL--RLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLNAINALPMPLGLDLRGGVYFLLQVDMKGAVQKKVTALSTDIRSQLRSNNIRHQGIDRS  180
            WL  + A PM LGLDL GGV FLL+VDM  A++ ++     ++++ LR +++R +++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  PDSITINFGSTDEAEAARTLLNTSQPDLIWIIRNGAGSVKLLG-EFKPKALADIQNNAVK  239
             + I + FG   E E AR+L+  +  D+  I      ++ +L   + P  LA+I++ ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNIITLNKRVNELAVKEPVIQQQGAERIVVQLPGVQDTARAKDIIGRTATLESRLADPLV  299
            QN+ T+ +RVNEL+V EP++Q+QGA+RIVV+LPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG--  291

Query  300  SRINVGEAAPPGTDTFRF--GENQMGVFKKSVIFSGDNITDASAGFDQNQRPAVNISLDA  357
                  + +   T+ F F  G    +   +++I++GD++TDA A+FD++ RP VNI+LD+
Sbjct  292  -----PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  358  TGGRVMQEVTRENIGKPMGMILFE------------------------KGKGEVLTIATI  393
             GG +M   TR N+G++M++I++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  394  QSEFGAKFQITGQPTTESANDlalllragslaaPMEIIEERTIGPSLGAENIEKGFKSLL  453
            QS +G++F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGA+NI KG  + L
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  454  IGFTAISIFMVAYYLLFGTFsvialavnllllisilsmlQATLTLPgiaamalalgmaiD  513
             G   +S+F++A Y +FG ++ +ALA N+++L++++S+L ATLTLPGIA++ L++GMA+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  514  SNVLINERIREELRNGSSPQMAISIGFDKAWATILDSNVTTLIAGLALLAFGSGPIKGFA  573
            +NVLI  RIREE+ NG + Q AIS GFD+A ++ILD+N+TTL+ G  L+A G+GP+KGFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  574  IVHCLGILTSMFSAVFFSRGLVNLWYG  600
            +   LGI+TSMF+A+  +R++VNL YG
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYG  613

533) secD in NC_017514


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  344 bits (1292),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 252/629 (41%), Positives = 429/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQSKVDAALQNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

534) secD in NC_017671


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 274/635 (44%), Positives = 437/635 (69%), Gaps = 37/635 (5%)

Query  1    MLE-FPRWKyvvilivlalsalyalPNIYQKDPAIQITANRGG-QIddalrdrvladlKK  58
            ML+ +P WKYV+IL VL ++ +Y+ PN+Y  D+AIQI++   + Q+ +A  DR    L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   AGVTAIGA--EKEGESLIVRLPDLKSQSAASDALRDTVGEKYTVALNLASTVPDWLARLG  116
            AG+   ++    +G + ++RL+    Q +A D +R ++G+ Y VALNLA T P+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  117  GRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARIAYQSVERRADNSIV  176
            + PM LGLDL GGVHF+L+VD   A+D RL  Y  +V++ LR  ++ Y+S+ + ++   V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN---V  177

Query  177  ANLSPSagddaaqraraaLVKAQPTLGYDVSGNRIT------VTVPETEITQIANGAIEQ  230
             +L+ + + +  Q     LV+   T +++++   +       +++  + +++I + +I Q
Sbjct  178  IQLGFGDDAEREQARA--LVRKTFT-DFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  231  NINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRMIGATATLEYRAVVEGNA  290
            N+ T+RNRVN+LGVAEP++QRQGA+R+VV+LPGVQDTAEAKR++G TA LE+R  + + +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--LGAGP  292

Query  291  QDAINSGRIPPEAKVYQQRDG-RGPILLNKRVIVTGDQMVGAQAVTDSNSGSPAVSVTLN  349
            +D+  +      + +++ R+G R +  +++ +I+TGDQ+ +A+A  D + G P V++ L+
Sbjct  293  DDSKGT------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLD  345

Query  350  NVGGQRMFDFTSANVNKPMAVVYTERVPTVT----VVDGQE----VRGFKVNEEVISVAN  401
              GG+ M   T +NV ++MAV++ E+ PT T    +V+G E    V+ FK +  +IS+A 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  402  INGVFGKNFQTTG-lqkkeaedlakllksgslaaPMDFVEERVVGPSLGAENVKNGMRav  460
            I++ +G +F+ TG   + E+ +LA LL++G+LAAPM F EER +GPSLGA+N+ +G+ A 
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  461  vfaflftlvffSIYYRMFGVITSAAMLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSV  520
            + + LF  +F+   YR FG+I++ A+ FN+++++A+MSL+GAT+TLPG+AG+ L++G++V
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  521  DANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGF  580
            DANVLI  RIREE+  G+  + AI  G++RA  +ILDANLT L+VG  LFA GTGP+KGF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  581  ALTMIIGIFASMFTAITVSRALATLIYGRR--KKL  613
            A+TM +GIF+SMFTAI V+RA+  LIYG R  KKL
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

535) secD in NC_008767


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 253/630 (41%), Positives = 429/630 (69%), Gaps = 42/630 (6%)

Query  1    MMNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQSKVDAALQN  60
            M+N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIK  118
            AGI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  ANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGGIRRELRREKIRSGTVRQAGNSLTV  178
            A PM LGLDL GGVHF ++VDM  A++  +  Y G ++  LR+EK+R  ++ Q GN + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  PLQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLH  234
             + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREAL  294
            NRVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTT  299

Query  295  EGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSI  354
            E      +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG +
Sbjct  300  E-----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FGELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAIT  390
             +  T +NVG+ MA+++I+Q                            +++ + I++++ 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-  410

Query  391  GGRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFA  450
            G++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  451  IVAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVL  510
            +V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  511  INERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHC  570
            I  RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  571  LGILTSMYSSVVVFRALVNLWYGRR--RKL  598
            LGI+TSM+++++V RA+VNL YG R  +KL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

536) NMBB_0672 in NC_017505


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  343 bits (1286),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 252/629 (41%), Positives = 428/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQSKVDAALQNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP    + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

537) secD in NC_017517


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  343 bits (1287),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 253/629 (41%), Positives = 428/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQSKVDAALKNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIVLM-LSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ M L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

538) secD in NC_017518


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  343 bits (1287),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 253/630 (41%), Positives = 430/630 (69%), Gaps = 42/630 (6%)

Query  1    MMNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALQN  60
            M+N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIK  118
            AGI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  ANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTV  178
            A PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  PLQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLH  234
             + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREAL  294
            NRVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTT  299

Query  295  EGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSI  354
            E      +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG +
Sbjct  300  E-----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FGELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAIT  390
             +  T +NVG+ MA+++I+Q                            +++ + I++++ 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-  410

Query  391  GGRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFA  450
            G++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  451  IVAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVL  510
            +V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  511  INERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHC  570
            I  RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  571  LGILTSMYSSVVVFRALVNLWYGRR--RKL  598
            LGI+TSM+++++V RA+VNL YG R  +KL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

539) secD in NC_003116


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  343 bits (1286),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 253/630 (41%), Positives = 430/630 (69%), Gaps = 42/630 (6%)

Query  1    MMNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALQN  60
            M+N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIK  118
            AGI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  ANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTV  178
            A PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  PLQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLH  234
             + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREAL  294
            NRVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTT  299

Query  295  EGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSI  354
            E      +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG +
Sbjct  300  E-----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FGELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAIT  390
             +  T +NVG+ MA+++I+Q                            +++ + I++++ 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-  410

Query  391  GGRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFA  450
            G++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  451  IVAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVL  510
            +V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  511  INERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHC  570
            I  RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  571  LGILTSMYSSVVVFRALVNLWYGRR--RKL  598
            LGI+TSM+++++V RA+VNL YG R  +KL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

540) secD in NC_018708


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  342 bits (1284),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 260/636 (41%), Positives = 430/636 (68%), Gaps = 47/636 (7%)

Query  1    MNRYPVWKYAilvivllvGALYTLPNFFGEAPAVQVSSAKATIKVDTAVQQRVEEALKAA  60
            +N+YP+WKY +++ VL+VG +Y+ PN++ + +A+Q+S+A ++++V  A  +R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GVTPDFVAL--EGNSVRARFDTPDTQLKAKDAIQKALVPDANDPSYIVALNLVSRSPLWL  118
            G+     +L  +G++   R+   + QL AKD ++KAL  D     Y+VALNL   +P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  KALHANPMYLGLDLRGGVHFMLQVDMQAALTKKAESYAGDIRTALRDKNIRHGGISRDGQ  178
            + + A PM LGLDL GGVHF+L+VDM+ A+  +   Y G++++ LR  ++R  ++++ G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  SIDIKVRDEATATAARNLIADQFADLQVTTTPEGTEFKLRASIKPEATRRVQEQALKQNM  238
             I++   D+A    AR L+   F+D+++T +       LR ++ P     ++E ++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  VTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDEGTEAR  298
             T++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE R+     +++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  299  SAETGRGPVPFGSERYLERNG--QPVIVKKQVILTGENLTDAQPGFDGQTQEPTVNLTLD  356
            ++          +E +  R+G   +  V + +I+TG+++TDA+++FD + + P VN+ LD
Sbjct  297  GT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  357  AKGSRIFKDITRENVGKRMAIVLFE------------------------KGKGEVVTAPV  392
            + G+ +    TR NVG+ MA++++E                        K    +++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  393  IRSEIGGGRVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIERGIHS  452
            I+S +G+ + +I+G    +E+++ ALLLRAG+LAAPM + EE TIGPSLGADNI +G+++
Sbjct  406  IQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  453  VVWGMVAIAVFMCIYYALFGIFstvslavnvllllailsmlqatlTLPGIAAMALALGVA  512
             +WGM+ +++F+   Y +FG+++TV+LA N+++LLA++S+L ATLTLPGIA++ L++G+A
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  513  IDSNVLINERIREELRAGVSPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRG  572
            +D+NVLI  RIREE+  G++ Q AI  G++RA ++ILD+N+TTL+ G  L+A G+GPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  573  FAVVHCIGILTSMFSAVFFSRGLVNLWYGRK--KKL  606
            FAV   +GI+TSMF+A+  +R++VNL YG +  KKL
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

541) secD in NC_010645


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  341 bits (1281),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 269/640 (43%), Positives = 441/640 (69%), Gaps = 49/640 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQISSAKATIKVEPSLLPRVEQILADA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+QIS+A ++++V  + + R  + L+DA
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   KLSATSVYYEQNGTLGTIRARFPSTDIQLQARDLLDRSLNTVAGDPHYTVALNLLPASPP  120
             ++  +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPRPMYLGLDLRGGVHFLLQVDMQGALTARYDSLAADARSILRDQKIDAVNV  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++ +++LR +K+   ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQAIVATFSSPELRDRAREALRSRMTDLQFIDRNEDGRFVLDGALSPQAIARVQETA  240
             + G+ I   F+    R++AR  +R   TD+++   + +G  VL  AL+P  +A ++E +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIVVQLPGVQDVAKAKELLGRTATLELRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RIVV+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQAALANGTVPFGLERYSDRDG-RPIL-VRRQVILTGENLQDAQPGRDHQTQQPSVN  358
            +  ++++          E +  R+G RP   V R +I+TG+++ DA+++ D++ + P VN
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNVGKRIAILLFE------------------------NGKGEVV  394
            + LD+ G+ +    TR NVG+ +A++++E                        +    ++
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKII  401

Query  395  TAPVIRSEIGGGQVQISGSMSAEEaadtalllragalaaPMSIIEERTIGPSLGADNIAK  454
            + + I+S +G+ Q +I+G  +  E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+K
Sbjct  402  SLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITK  460

Query  455  GFYSTLYGFIAIAVFIIVYYHLFGVFSTIGltfnvllllallsmlqatltlPGIAAIALT  514
            G  ++L G + +++FI+  Y++FG+++T++L+FN+++LLAL+S+L ATLTLPGIA+I LT
Sbjct  461  GVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLT  520

Query  515  LGMAIDSNVLINERIREELRAGASPQQAIYHGFERAWGTILDSNLTTLIVGLALLAFGSG  574
            +GMA+D+NVLI  RIREE+  G + Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+G
Sbjct  521  MGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTG  580

Query  575  PIRGFAVVHCLGILTSMFSSVVGVRALANLWYGGR--KKL  612
            P++GFAV   LGI+TSMF++++  RA+ NL YGGR  KKL
Sbjct  581  PVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

542) bglu_1g06050 in NC_012724


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  341 bits (1281),  Expect = 6e-95, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 437/633 (70%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSSTLAQVEAALKAA  60
            +N+YP+WKYV+++  L +G++Y+ PN+Y + +A+Q+S++ +++++  + + +   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   SITPDDITFDNSANNANIRVRLKDTDTQLRVKDLLQKALNSDPSDPQYVVALNLQSASPR  120
            +I     ++ ++++ + +R  L   + QL  KD+++KAL  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALNKKLDSDATDARTQLRDRGIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A++ +L     + ++ LR   +R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVANFADQATAEQARSFLAGSITELQWATQPGGGGYQVV-GTFTPAVRQAVEEAALK  239
            ++ +   F+D+A  EQAR+++  ++T+++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPIIQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  LHPNPNDPVPPGDEL-FTQGNQVPVLLRKQVIFTGDRIIDASAGFDEHNRPSVNIRLDSN  358
              + P+D+    + + F +G + +  + + +I+TGD++ DA A+FDEH RP VNI LD++
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRTVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGVHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMVAYYLLFgvvsviglsvnllllvaalsvMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A +S++ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVLINERVREELRGGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  R+REE+  G + Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCIGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               +GI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

543) secD in NC_013016


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  341 bits (1280),  Expect = 6e-95, Method: Compositional matrix adjust.
 Identities = 252/629 (41%), Positives = 429/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

544) secD in NC_010528


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  341 bits (1279),  Expect = 7e-95, Method: Compositional matrix adjust.
 Identities = 268/634 (43%), Positives = 426/634 (68%), Gaps = 47/634 (7%)

Query  1    MNRYPLWKYlvilvalaigiiYTLPNFFGEAPAVQVSSGKATVKVDLSMQKQVEEILAQN  60
            +N+YPLWKY++IL  L +G+IY+ PN++ + +A+Q+S++ ++++V  +   +    L++ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLQPDGVFFDISGQSGSVKARFRTTDEQLKAKDVLSRALNPDASDPAYVVALNLLSGSPR  120
             +   +  +  +G++G +  R+   ++QL AKDV+ +AL  D     YVVALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLL--RLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTSLHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDARTLLRDKNIRHGGIDRD  180
            WL ++ A PM LGLDL GGVHFLL+VDM  A+D +L    G+ ++LLR  ++R  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GERLTVRFNNADDASRARTLLADNVREVAFAMDGNNIVG------TFTEAARRAVQDAAV  234
            G+ + + F +  +  +AR+L+     +  F +   ++ G      ++T A    +++ ++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  235  KQNITTLHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLVDND  294
            KQN+TT++NRVNELGVAEP++Q+QGA+RIVV+LPGVQDTA AK I+G+TA LE RL    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--GA  290

Query  295  APRSPRPGDPIPFGSELFTQGNGAPVVLKKQVIFTGDRIESASAGFDQNQQPSVNIKLDA  354
            +P  ++    + F    F +G  ++  + + +I+TGD++  A A+FD++ +P VNI+LD+
Sbjct  291  GPDDSKGTTEM-FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  355  QGGRVLRDVSRENLKKPMAIVLFE------------------------KGKGEVLTVATI  390
            +GG ++   +R N+ ++MA++++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  391  QSELGSSFQITGSYSTEAANDlalllragslaaPMEIIEERTIGPSLGADNIEKGFDSVA  450
            QS LGS F+ITG  +   +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG D+  
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  451  YGFAAIGVFMILYYMLFGVFsvialgvnlllliavlsmlQATLTLPGIAAIALVLGMAID  510
             G   +++F++  Y +FG+++ +AL+ N+++L+A++S+L ATLTLPGIA+I L +GMA+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  511  ANVLINERIREELRAGASPQMAIAVGFDRAWATILDSNVTTLIAGLALLAFGSGPVRGFA  570
            ANVLI  RIREE+  G + Q AI+ GFDRA ++ILD+N+TTL+ G  L+A G+GPV+GFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  571  VVHCLGILTSMFSAVFFNRGLVNLWYGRK--KKL  602
            V   LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

545) secD in NC_017501


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  341 bits (1280),  Expect = 7e-95, Method: Compositional matrix adjust.
 Identities = 253/630 (41%), Positives = 429/630 (69%), Gaps = 42/630 (6%)

Query  1    MMNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKN  60
            M+N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  61   AGIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIK  118
            AGI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ 
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  119  ANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTV  178
            A PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  179  PLQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLH  234
             + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  235  NRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREAL  294
            NRVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTT  299

Query  295  EGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSI  354
            E      +E+    G+RP    + + + +TGD++ DA++SFD+ G P V+++LD+ GG +
Sbjct  300  E-----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGEL  351

Query  355  FGELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAIT  390
             +  T +NVG+ MA+++I+Q                            +++ + I++++ 
Sbjct  352  MSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-  410

Query  391  GGRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFA  450
            G++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  451  IVAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVL  510
            +V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVL
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVL  530

Query  511  INERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHC  570
            I  RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   
Sbjct  531  IFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMS  590

Query  571  LGILTSMYSSVVVFRALVNLWYGRR--RKL  598
            LGI+TSM+++++V RA+VNL YG R  +KL
Sbjct  591  LGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

546) secD in NC_017515


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  341 bits (1280),  Expect = 7e-95, Method: Compositional matrix adjust.
 Identities = 252/629 (41%), Positives = 429/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALQNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

547) secD in NC_022247


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  341 bits (1280),  Expect = 7e-95, Method: Compositional matrix adjust.
 Identities = 260/637 (41%), Positives = 430/637 (68%), Gaps = 50/637 (7%)

Query  1    MNRYPVWKYAiivivllvgliYSLPNFFGEAPAVQVSAAKSTVKVDAATQSRVEEALKAA  60
            +N+YP+WKY +I+ VL+VG+IYS PN++ + +A+Q+S+A ++++V  A   R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GLAPDLLTLE----GGSLRARFATPDEQLKARDTVQRTLvpdpadppyvvaLNLVSRSPA  116
            G++    +L     GG LR  ++  ++QL A+D V+++L  D   +     LNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDDYVVA-----LNLARTTPN  114

Query  117  WLTALHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTTFRDKGIRGTSVSRN  176
            WL  + A PM LGLDL GGV+FLL+VDM  AID +   + +++++ +R   +R  S+++ 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  177  GQTVEVSFRDAAALEAAKRLIQDQFQDLSTTDSQDGSNWRLVATIKPEAARRLQDAALKQ  236
            G+ ++++F D A  E A+ L++  F D+  T ++  +   L  ++ P     +++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  237  NITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVDESAE  296
            N+TT++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE RL   + +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  297  GRAAELSGGPVPFGSEKF-LERNGRPVI-VKKQVLVTGENLTDAQPGFDQQSNQPKVDLT  354
            ++++          +E F +   GRP   V + +++TG+++TDA+++FD+++ +P+V++ 
Sbjct  295  SKGT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVNIN  343

Query  355  MDAKGGRIMRDVSRENYKKRMAMLIFE------------------------KGKGEVLTA  390
            +D+ GG +M   +R N  + MA++++E                        K    +++ 
Sbjct  344  LDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISL  403

Query  391  PSINGELGNRFQISGSMTVaeaadlalllragslaaPMEIIQERTIGPSLGADNIEKGFK  450
            ++I++ LG++F+I+G    +E+++LALLLRAG+LAAPM + +ERTIGPSLGADNI KG  
Sbjct  404  ATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  451  SVMYGFLAIMVFMCAYYALFGLFSSIALAVNLMLLVAILSMLQATLTLPGIAAMALAIGV  510
            + + G L + +F+ A Y +FGL++++ALA N+++L+A++S+L ATLTLPGIA++ L++G+
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  511  AIDSNVLINERVREELRNGAAPQAAIHAGYDRAWGTILDSNVTTLIAGIALLAFGSGPVR  570
            A+D+NVLI  R+REE+ NG + Q AI  G+DRA  +ILD+N+TTL+ G  L+A G+GPV+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  571  GFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQK--KKL  605
            GFAV   +GI TSMF+A+  +R++VN+ YG +  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

548) GEM_2807 in NC_018513


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  341 bits (1279),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 266/632 (43%), Positives = 431/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA  60
            +N+YPLWKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTLLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++LLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVVNFSDAQTAEDARKVLAASVTELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
            ++ + + F+D    E+AR ++  + T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQAPVLLKKEVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRSVRTVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvisviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+I+ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGIVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

549) secD in NC_008390


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1277),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 267/632 (43%), Positives = 432/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA  60
            +N+YPLWKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARALLRDRNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ +ALLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVVNFSDAQTAEDARKVLAASVTELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
            ++ + + F+D    E+AR ++  + T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQAPVLLKKEVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRSVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvisviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+I+ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

550) secD in NC_010551


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1278),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 267/632 (43%), Positives = 432/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA  60
            +N+YPLWKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARALLRDRNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ +ALLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVVNFSDAQTAEDARKVLAASVTELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
            ++ + + F+D    E+AR ++  + T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQAPVLLKKEVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRSVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvisviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+I+ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

551) secD in NC_015726


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 268/634 (43%), Positives = 426/634 (68%), Gaps = 47/634 (7%)

Query  34   MNRYPLWKYlvilvalaigiiYTLPNFFGEAPAVQVSSGKATVKVDLAMQKQVEEILAQN  93
            +N+YPLWKY++IL  L +G+IY+ PN++ + +A+Q+S++ ++++V  A   +    L++ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  94   QLRPDGVFFDISGQSGSVKARFRTTDEQLKAKDVLSRTLNPDAANPTYVVALNLLSGSPR  153
             +   +  +  +G++G +  R+   ++QL AKDV+ ++L  D     YVVALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLL--RLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  154  WLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLGGDARTLLRDKSIRHGGIDRD  213
            WL  + A PM LGLDL GGVHFLL+VDM  A+D +L    G+ ++LLR   +R  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  214  GERLTVRFNNADDANRARPILADNLREVAFAMDGNNIVG------TFTEAARKAVQDAAV  267
            G+ + + F +  + ++AR+++   + +  F +   ++ G      ++T A    +++ ++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  268  KQNITTLHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLVDND  327
            KQN+TT++NRVNELGVAEP++Q+QGA+RIVV+LPGVQDTA AK I+G+TA LE RL    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--GA  290

Query  328  APRSPRPGDPIPFGSELFTQGNGAPVVLKKQVIFTGDRIESASAGFDQNQHPSVNIKLDA  387
            +P  ++    + F    F +G  ++  + + +I+TGD++  A A+FD++ +P VNI+LD+
Sbjct  291  GPDDSKGTTEM-FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  388  QGGRVLRDVSRENLKKPMAIVLFE------------------------KGKGEVLTVATI  423
            +GG ++   +R N+ ++MA++++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  424  QSELGSSFQITGSYSTEAANDlalllragslaaPMEIIEERTIGPSLGADNIQKGFDSVA  483
            QS LGS F+ITG  +   +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG D+  
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  484  YGFAAIAVFMVLYYMLFGVFSvvalgvnlllliavlsmlqaTLTLPGIAAIALVLGMAID  543
             G   +++F++  Y +FG+++ VAL+ N+++L+A++S+L ATLTLPGIA+I L +GMA+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  544  ANVLINERIREELRAGASPQMAIAVGFDRAWATILDSNVTTLIAGLALLAFGSGPVRGFA  603
            ANVLI  RIREE+  G + Q AI+ GFDRA ++ILD+N+TTL+ G  L+A G+GPV+GFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  604  VVHCLGILTSMFSAVFFNRGLVNLWYGRK--KKL  635
            V   LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

552) Msip34_2233 in NC_012969


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 270/632 (43%), Positives = 427/632 (68%), Gaps = 39/632 (6%)

Query  1    MNRYPLWKYilvlitlvlgvvYSLPNLFGESPAVQVSTAKSSAKLDPALLGQVEDILKQE  60
            +N+YPLWKY+L+L  LV+G +YS PNL+ + +A+Q+S A ++ ++  A +++    L + 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   KITYEAVFL--DTNGVKVRFENADTQINAKDVLQGKLGKDYVVALNLISRSPSWLRSIGA  118
             I   A  L  + +G  +R+ + + Q+ AKDV++  LG DYVVALNL   +P+WLR++GA
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  LPMYLGLDLRGGVHFLLQVDMKAALDKAAERYVGDFRSALRKERVAYMGVSREGQAVQVR  178
             PM LGLDL GGVHFLL+VDM  A+D     Y G+ ++ LRKE+V Y ++++ G+ +Q+ 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  FSSAAELAKAQKILNKEYPDLTFRTLDSGNDKLLIATLNLQAQKRIQEFALKQNIQTLHN  238
            F+  AE  +A+ ++ K + D+ +   +     +L  +L       I+E+++KQN+ T++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  239  RVNELGVAEPIIQQQGLDRIVIQLPGVQDTAKAKEILGRTATLEIRMVDEEKSDMTTLDK  298
            RVNELGVAEP++Q+QG +RIV++LPGVQDTA AK ILG+TA LE+R+         T + 
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEM  301

Query  299  ASKGQVPFGDEYYVERNGQPILVKKNVVLTGDYITDAGPGLDQQNGESVVHVTLDGRGAR  358
                   F    + E    +  V + +++TGD +TDA +++D++ G + V++ LDG+G+ 
Sbjct  302  -------FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGE  350

Query  359  IFKQATKENVGKRMAILLIE------------------------KGQAEVITAPVIREEI  394
            +  +AT+ NVG+ MA+++IE                        K +  +I+ + I+  +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  395  GGGRVQISGMANVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGF  454
             G++ +I+G+    E+++++LLLRAG+LAAPM + EERT+GPS+G +NI +G +++LWG 
Sbjct  411  -GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  455  AAIAVFMIIYYMLFgsvsvlalgvnlllltavlsllqatltlpglaaIALTLGMAIDANV  514
              +++F++  Y +FG ++ +AL+ N+++L A++SLL ATLTLPG+A+I LT+GMA+DANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  515  LINERIREELRNGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVH  574
            LI  RIREE+ NG T Q AI  G+DRA+ +ILD+N+TT++ G  LF  G+GPVKGFAV  
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  575  VLGILTSMFSAVVVSRALVNLIYGYRRKISKL  606
             LGI+TSMF+A++V+RA+VNLIYG  R + KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYG-GRDFKKL  620

553) secD in NC_008313


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1277),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 267/634 (43%), Positives = 426/634 (68%), Gaps = 47/634 (7%)

Query  1    MNRYPLWKYlvilvalaigiiYTLPNFFGEAPAVQVSSGKATVKVDLSMQKQVEEILAQN  60
            +N+YPLWKY++IL  L +G+IY+ PN++ + +A+Q+S++ ++++V  +   +    L++ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLQPDGVFFDISGQSGSVKARFRTTDEQLKAKDILSRTLNPDAADPTYVVALNLLSGSPR  120
             +   +  +  +G++G +  R+   ++QL AKD++ ++L  D     YVVALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLL--RLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLGGDARTLLRDKSIRHGGIDRD  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+D +L    G+ ++LLR   +R  ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GERLTVRFNNADDANRARPLLADNLREVAFAMDGNNIVG------TFTEAARKAVQDAAV  234
            G+ + + F +  + ++AR+L+   + +  F +   ++ G      ++T A    +++ ++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  235  KQNITTLHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLVDND  294
            KQN+TT++NRVNELGVAEP++Q+QGA+RIVV+LPGVQDTA AK I+G+TA LE RL    
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--GA  290

Query  295  APRSPRPGDPIPFGSELFTQGNGAPVVLKKQVIFTGDRIESASAGFDQNQQPSVNIKLDA  354
            +P  ++    + F    F +G  ++  + + +I+TGD++  A A+FD++ +P VNI+LD+
Sbjct  291  GPDDSKGTTEM-FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  355  QGGRVLRDVSRENLKKPMAIVLFE------------------------KGKGEVLTVATI  390
            +GG ++   +R N+ ++MA++++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  391  QSELGSSFQITGSYSTEAANDlalllragslaaPMEIIEERTIGPSLGADNIRKGFDSVA  450
            QS LGS F+ITG  +   +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG D+  
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  451  YGFAAIGVFMILYYMLFGVFSvvalgvnlllliavlsmlqaTLTLPGIAAIALVLGMAID  510
             G   +++F++  Y +FG+++ VAL+ N+++L+A++S+L ATLTLPGIA+I L +GMA+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  511  ANVLINERIREELRAGASPQMAIAVGFDRAWATILDSNVTTLIAGLALLAFGSGPVRGFA  570
            ANVLI  RIREE+  G + Q AI+ GFDRA ++ILD+N+TTL+ G  L+A G+GPV+GFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  571  VVHCLGILTSMFSAVFFNRGLVNLWYGRK--KKL  602
            V   LGI+TSMF+A+   R++VNL YG +  KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

554) secD in NC_008060


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1277),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 264/632 (42%), Positives = 434/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA  60
            +N+YPLWKYV+++  L +G++Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR  120
             I     ++ + + ++ +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARSLLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++LLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  EQSVVVNFSDAQTAEDARKVLAASITELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
             + + + F+D    E+AR ++  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQAPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + +++I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRAVRTVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvvsviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

555) secD in NC_008542


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1277),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 264/632 (42%), Positives = 434/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA  60
            +N+YPLWKYV+++  L +G++Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR  120
             I     ++ + + ++ +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARSLLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++LLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  EQSVVVNFSDAQTAEDARKVLAASITELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
             + + + F+D    E+AR ++  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQAPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + +++I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRAVRTVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvvsviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

556) secD in NC_010508


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1278),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 264/632 (42%), Positives = 435/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA  60
            +N+YPLWKYV+++  L +G++Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR  120
             I     ++ + + ++ +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARSLLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++LLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  EQSVVVNFSDAQTAEDARKVLAASITELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
             + + + F+D    E+AR ++  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGSQAPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G++++  + +++I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRAVRTVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvvsviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

557) secD in NC_017516


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1275),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 252/629 (41%), Positives = 428/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP    + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

558) secD in NC_017512


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  340 bits (1278),  Expect = 9e-95, Method: Compositional matrix adjust.
 Identities = 252/629 (41%), Positives = 429/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALQNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP +  + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

559) secD in NC_010084


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  339 bits (1274),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 265/632 (42%), Positives = 431/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDANTLTQVETALAAA  60
            +N+YPLWKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKTLNADPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDAADARSLLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++LLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVVNFSDAQTAEDARKVLASSITELQWAtqpggggtqvvgtftpAVQKAVEDAALKQ  240
            ++ + + F+D    E+AR ++  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQVPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G + +  + +++I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRAVRTVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvisviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+I+ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGIVNLWYGSR--KKL  605
              LGI+TSMF+A+  +R++VNL YG+R  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

560) secD in NC_010804


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  339 bits (1274),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 265/632 (42%), Positives = 431/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDANTLTQVETALAAA  60
            +N+YPLWKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKTLNADPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDAADARSLLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++LLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVVNFSDAQTAEDARKVLASSITELQWAtqpggggtqvvgtftpAVQKAVEDAALKQ  240
            ++ + + F+D    E+AR ++  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQVPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G + +  + +++I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRAVRTVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvisviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+I+ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGIVNLWYGSR--KKL  605
              LGI+TSMF+A+  +R++VNL YG+R  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

561) secD in NC_012791


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  339 bits (1274),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 260/637 (41%), Positives = 429/637 (68%), Gaps = 50/637 (7%)

Query  1    MNRYPVWKYAiivivllvgliYSLPNFFGEAPAVQVSAAKSTVKVDAATQSRVEEALKAA  60
            +N+YP+WKY +I+ VL+VG+IYS PN++ + +A+Q+S+A ++++V  A   R   AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GLAPDLLTLE----GGSLRARFATPDEQLKARDTLQRTLvpdpadppyvvaLNLVSRSPA  116
            G++    +L     GG LR  ++  ++QL A+D ++++L  D   +     LNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDDYVVA-----LNLARTTPN  114

Query  117  WLTALHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTTFRDKGIRGTSVNRN  176
            WL  + A PM LGLDL GGV+FLL+VDM  AID +   + +++++ +R   +R  S+ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  177  GQAIEVSFRDAAALEAAKRLIQDQFQDLATTDSQDGSNWRLVATIKPEAARRLQDAALKQ  236
            G+ I+++F D A  E A+ L++  F D+  T ++  +   L  ++ P     +++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  237  NITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVDESAE  296
            N+TT++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE RL   + +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  297  GRAAELSGGPVPFGSEKF-LERNGRPVI-VKKQVLVTGENLTDAQPGFDQQSNQPKVDLT  354
            ++++          +E F +   GRP   V + +++TG+++TDA+++FD+++ +P+V++ 
Sbjct  295  SKGT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVNIN  343

Query  355  MDAKGGRIMRDVSRENYKKRMAMLIFE------------------------KGKGEVLTA  390
            +D+ GG +M   +R N  + MA++++E                        K    +++ 
Sbjct  344  LDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISL  403

Query  391  PSINGELGNRFQISGSMTVaeaadlalllragslaaPMEIIQERTIGPSLGADNIEKGFK  450
            ++I++ LG++F+I+G    +E+++LALLLRAG+LAAPM + +ERTIGPSLGADNI KG  
Sbjct  404  ATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  451  SVMYGFLAIMVFMCAYYALFGLFSSIALAVNLMLLVAILSMLQATLTLPGIAAMALAIGV  510
            + + G L + +F+ A Y +FGL++++ALA N+++L+A++S+L ATLTLPGIA++ L++G+
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  511  AIDSNVLINERVREELRNGASPQAAIHAGYDRAWGTILDSNVTTLIAGIALLAFGSGPVR  570
            A+D+NVLI  R+REE+ NG + Q AI  G+DRA  +ILD+N+TTL+ G  L+A G+GPV+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  571  GFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQK--KKL  605
            GFAV   +GI TSMF+A+  +R++VN+ YG +  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

562) secD in NC_010682


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  339 bits (1271),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 269/635 (43%), Positives = 431/635 (68%), Gaps = 43/635 (6%)

Query  1    MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVKVDLNVQKQVESLLAAA  60
            +N+YPLWKY++IL  L +GF+Y+ PN++ + +A+Q+S++ ++++V      +    L+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   SIQPDGVFFDNNGTSASVRVRFADTDTQLKAKDILARGLNTDQADPTYIVALNLLPGSPR  120
            +I   +  + +NG ++ +R+  +  + QL AKD++ ++L  D     Y+VALNL   +P 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLSGAPFFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDSLAGDIRTQLRDKGIRHSGID  180
            WL      A PM LGLDL GGVHFLL+VDM+ A+  +L    G++++ LR   +R  ++ 
Sbjct  115  WLRNVG--ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLP  172

Query  181  RNGNTITIKFSTPddadrartlladSTRELAYTVDKSadgatltgtftaaaMKEVQDNAV  240
            + GN I + F+   + ++AR+L+  +  ++  T     + + L  ++T+A + E+++ ++
Sbjct  173  QLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  241  KQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPN  300
            KQN+ T++NRVNELGVAEP++Q+QG++RIVV+LPGVQDTA AK I+G+TA LE RL+   
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG-  291

Query  301  APLAPRPGDPVPLGDEL-FTQGRSAPVLLQKQVIFTGDRITSASAGFDQNHNSSVDITLD  359
                  P+D+    + + F +G  ++  +++ +I+TGD++T A A+FD++  + V+I LD
Sbjct  292  ------PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLD  345

Query  360  GQGGRMLRDVSRDNIGKRMGIVLFE------------------------KGKGEVLTVAT  395
            G+GG ++   +R N+G+ M+++++E                        K    ++++AT
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  396  IQSELGSRFQITGMGSTEaasdlalllragslaaPMEIIEERTIGPSLGADNIKKGFDSA  455
            IQS LGS+F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGPSLGADNI KG D++
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  456  LYGFLAISVFMVLYYMLFGAFSVAALGVNVFLLIALLSMLQatltlpgiaaialalgmai  515
            L G L +S+F++  Y +FG ++  AL+ N+ +L+AL+S+L ATLTLPGIA+I L++GMA+
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  516  daNVLINERVREELRSGASAQMAIAAGFDRAWATILDSNVTTLIAGLALIAFGSGPVRGF  575
            DANVLI  R+REE+ +G + Q AI+ GFDRA ++ILD+N+TTL+ G  L+A G+GPV+GF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  576  AIVHCLGIGTSMFSAVFFNRGLVNLWYGRK--KKL  608
            A+   LGI TSMF+A+   R++VNL YG +  KKL
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

563) secD in NC_010120


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  339 bits (1272),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 252/629 (41%), Positives = 428/629 (69%), Gaps = 42/629 (6%)

Query  1    MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNA  60
            +N+YPLWKY+LI+  + V+ +YS PNL+ + +A+Q+S    A+ + +    +   AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQTDGMFVVDNSLK--VRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKA  118
            GI   +  + +N+    +R+   E QL A+DV+ ++LG++Y+ ALNL   +P+W+ ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVP  178
             PM LGLDL GGVHF ++VDM  A++  +  Y G+++  LR+EK+R  ++ Q GN + + 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LQDAGDVQKALPQLRKLFPEATLNS---DGSNIV-LTLSEEAVNKVRSDAVKQNITTLHN  234
            + D ++ ++A + +RK F +  + +   +G  ++ ++L+   +  +R  ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  235  RVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALE  294
            RVNELGVAEP++Q+ GA+RIVV+LPGVQDTA AK I+G+TA LE+R+   +P   + + E
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL-GAGPDDSKGTTE  300

Query  295  GNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIF  354
                  +E+    G+RP    + + + +TGD++ DA++SFD+ G P V+++LD+ GG + 
Sbjct  301  -----MFEF--REGGRPAA-AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELM  352

Query  355  GELTAANVGKRMAMVLIDQ------------------------GKSEVVTAPVIRTAITG  390
            +  T +NVG+ MA+++I+Q                            +++ + I++++ G
Sbjct  353  SRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-G  411

Query  391  GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI  450
            ++  I+G    +E+++ +LLLRAG+LAAPM + EERTIGPSLG +NI KG +++LWG  +
Sbjct  412  SQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLF  471

Query  451  VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQatltlpgmaalaltlgmaIDSNVLI  510
            V+ F++  YR+ G+++T+AL+ N++ L++++S + ATLTLPG+A++ LT+GMA+D+NVLI
Sbjct  472  VSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLI  531

Query  511  NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL  570
              RIREE+  G+  Q+AI+ GF++A ++I+D+NLT+L+ G  L+  G+GPV+GFAV   L
Sbjct  532  FSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSL  591

Query  571  GILTSMYSSVVVFRALVNLWYGRR--RKL  597
            GI+TSM+++++V RA+VNL YG R  +KL
Sbjct  592  GIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

564) BC1003_0432 in NC_014539


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  338 bits (1270),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 262/632 (42%), Positives = 430/632 (69%), Gaps = 39/632 (6%)

Query  1    MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEATLAAN  60
            +N+YPLWKY ++L  LV+G++Y+ PNL+ + +A+Q+S++ +++++  + +     +L+  
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPEDVTFDNTSANANIRVRLVDTDTQLRVKDLLQKSLNNDPSDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L +D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDNNIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A++ +L    ++ ++LLR +++R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  NQTVVINFadqatadaaaKQLSRSIGELQWASQNGPDGSVQLVGTFTPTVQKAVQDAALK  240
             + + + F+D+A  + A   + +++ +++  +    +G   L  ++TP+    +++ ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  241  QNITTLHNRVNELGVAEPVIQQQGADRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN  300
            QN+TT++NRVNELGVAEP++Q+QGA+RIVVELPGVQDTA AK I+G+TA LE RL+   +
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD  293

Query  301  THPNPSDPVPPGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  360
                 ++        F +G + +  + + +I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  294  DSKGTTEMFE-----FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  361  GRAVRSVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  396
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  397  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKKGFHSVVWG  456
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG ++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  457  FAAIAVFMVAYYMLFGVISmiglsvnlllliavlsmlQatltlpgiaaialalgmaidaN  516
               +++F++A Y +FG+I+ ++L+ N+++L+A++S+L ATLTLPGIA+I L++GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  517  VLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVRGFAIV  576
            VLI  R+REE+ NG   Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV+GFA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  577  HCIGILTSMFSAVFFSRGIVNLWYGGK--KKL  606
              +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

565) secD in NC_011000


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  338 bits (1268),  Expect = 7e-94, Method: Compositional matrix adjust.
 Identities = 264/632 (42%), Positives = 433/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA  60
            +N+YPLWKYV+++  L +G++Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARSLLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++LLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  EQSVVVNFSDAQTAEDARKVLAASITELQWAtqpggggtqvvgtftpAVQKAVEDAALKQ  240
             + + + F+D    E+AR ++  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGIQAPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + +++I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRAVRTVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvvsviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGIVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

566) A359_00310 in NC_018419


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  337 bits (1265),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 263/611 (44%), Positives = 424/611 (70%), Gaps = 38/611 (6%)

Query  16   PNLYGEDPAVQISGARDVPSLSETTLKEIRAILEQEHIFSKATVL---DRGSILCRFSNV  72
            PNLY +D+A+QISGA     ++++ +      L +  I  KA+ L   ++G++L R+S+ 
Sbjct  26   PNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAENGKGGLL-RLSKQ  84

Query  73   SAQLHARDALIKALGENYLVALHLAPATPLWLSRIGARPIKLGLDLRGGVYFLIEVDMDT  132
              QL A+D + KALG++Y+VAL+LA +TP WL  +GA P+KLGLDL GGV FL+EVDMD 
Sbjct  85   EDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDK  144

Query  133  VLH---KLQKKTIDTLLFDLHGKGIPYLAVHQIENYGSTIRFCDADTRDKAIDWLTQQHH  189
             ++   K+    + +LL   +   + Y ++ Q+ N    + F D   R++A   + +   
Sbjct  145  AIDARLKVYEGEVKALL---RKEKVRYRSLPQLGN-VIQLGFGDDAEREQARALVRKTFT  200

Query  190  NIVIRSIKDNA-----LGVKPANNLLQQARESAVKHNITILRNRINQLGIDEPLVHRQGS  244
            ++ I +   N+     +++ PA+  L + RE ++K+N+T +RNR+N+LG+ EPLV+RQG+
Sbjct  201  DFEITPAELNGIPVLRMALTPAK--LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGA  258

Query  245  GRIVVEMPGLQDMALAKRVLGATGTLEFRLVNTFAHQSPVSSLVPGDSELKSTQDGQPVI  304
             RIVVE+PG+QD A AKR+LG T+ LEFRL     +    + +     E++  ++G+P  
Sbjct  259  NRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMF----EFR--EGGRPAA  312

Query  305  -LYKQVILTGEHITDATSNTDEYNLPQVNISLDRSGGRIMSNFTKENIGNLIATLFVE--  361
             + + +I+TG+++TDA ++ DE   PQVNI+LD  GG +MS  T+ N+G  +A +F+E  
Sbjct  313  AVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQR  372

Query  362  ----YK----DCGQKDDDGRTILEQQEKVINIATIQSRISNSFRITGIKNPNEarqlsll  413
                Y     +  +KD   +T + ++ K+I++ATIQS +++ FRITG++   E+ +L+LL
Sbjct  373  PTTTYTRQMVNGVEKDVPVQT-FKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALL  431

Query  414  lragalsaPIQIIEERTIGPTVGRQNISQGLAACFWGLLASILFMIIWYRKFGLIATTAI  473
            LRAG+L+AP+ + EERTIGP++G +NI++G+ A +WG+L   LF++  YR FGLIAT A+
Sbjct  432  LRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGLIATVAL  491

Query  474  IANLVLIIGIMSIIPGTTLTMPGIASIVLTLAVAVDANVLINERIKEELRNGRTVQKAIH  533
              N+V+++++MS++ G+TLT+PGIA+IVLT+++AVDANVLI  RI+EE+ NG TVQ+AI 
Sbjct  492  AFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAIS  550

Query  534  EGYRGAFSSIVDANittlitaiilYAVVASGPIKAFAITSSIGVATSMLTAIIGTRAMAN  593
            EG+  A+++I+DAN+TTL+ + IL+A +++GP+K+FA+T S+G+ TSM+TAI+ TRAM N
Sbjct  551  EGFDRAYTAILDANLTTLLVGGILFA-MGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN  609

Query  594  LLYGAKRIDNL  604
            L+YG++ + +L
Sbjct  610  LIYGGRDFKKL  620

567) secD in NC_007510


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 264/632 (42%), Positives = 433/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPLWKYVVMVVALAIGLLYTLPNFFGESPAVQVSSGKATVKLDSTTLTQVESALASA  60
            +N+YPLWKYV+++  L +G++Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QITPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTLLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++LLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVVNFSDAQTAEDARKVLALSITELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
            ++ + + F+D    E+AR ++  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQAPVLLKKEVIFTGDRIIDASAGFDDHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + + +I+TGD++ DA A+FD+H RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRSVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMIAYYMLFGvvsviglsvnllllvavlslMQatltlpgiaaialalgmaidaN  515
               +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQTAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGIVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

568) BC1001_0418 in NC_015136


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  337 bits (1263),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 262/632 (42%), Positives = 430/632 (69%), Gaps = 39/632 (6%)

Query  1    MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVETALAAN  60
            +N+YPLWKY ++L  LV+G++Y+ PNL+ + +A+Q+S++ +++++  + +     AL+  
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPEDVTFDNSSTNANIRVRLLDTDTQLRVKDLLQKSLNSDPSDPQFVVALNLQSASPR  120
             I     ++ +++  + +R  L   + QL  KD+++K+L  D     +VVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDNNIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A++ +L    ++ ++LLR +++R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  NQTVVINFadqatadaaaKQLSRSIGELQWASQNGPDGSVQLVGTFTPTVQKAVQDAALK  240
             + + + F+D+A  + A   + +++ +++  +    +G   L  ++TP+    +++ ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  241  QNITTLHNRVNELGVAEPVIQQQGADRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN  300
            QN+TT++NRVNELGVAEP++Q+QGA+RIVVELPGVQDTA AK I+G+TA LE RL+   +
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPD  293

Query  301  THPNPSDPVPPGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  360
                 ++        F +G + +  + + +I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  294  DSKGTTEMFE-----FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  361  GRAVRSVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQS  396
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  397  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKKGFHSVVWG  456
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG ++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  457  FAAIAVFMIAYYMLFGVISmiglsvnlllliavlsmlQatltlpgiaaialalgmaidaN  516
               +++F++A Y +FG+I+ ++L+ N+++L+A++S+L ATLTLPGIA+I L++GMA+DAN
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  517  VLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVRGFAIV  576
            VLI  R+REE+ NG   Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV+GFA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  577  HCIGILTSMFSAVFFSRGIVNLWYGGK--KKL  606
              +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

569) secD in NC_014323


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  336 bits (1261),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 269/631 (43%), Positives = 434/631 (69%), Gaps = 50/631 (7%)

Query  1    MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG  60
            +N+Y+LWKY LI+  L+ G IY+ PN++ + +A+QIS+A ++L+V  A  +R  + L ++
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLGAESVAFDNSGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ  120
             +   + ++ ++G    +R  ++  + Q+ AK ++ K L  D     Y+VA+NL   TP+
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGISRS  180
            WL+++ A PM LGLDL GGVHFL++VD+   ++ RL+  ++ V++LLR  ++R  ++++ 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GDSIEISFRDADTRNKARAALGELQEMLLTD-AGSGDDLKLIATLR----PEALKQTQED  235
            G+ I+++F D   R++ARA    L    +TD   +  +L+ I+ LR    P  L + +E 
Sbjct  175  GNVIQLGFGDDAEREQARA----LVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREY  230

Query  236  GVKQNISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVD  295
            ++KQN++T+ +RVNELGVAEPL+QRQGA+RIVVELPGVQD + AK I+G+TA LE R+  
Sbjct  231  SIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGA  290

Query  296  ESVVRGTEETTAIPFGSELFKIGKG--APVVLNKEPVLTGDYISNASASFDENHQPAVSI  353
                 G +++ +    +E+F +  G  ++  +++  ++TGD +++A ASFDE+ +P V+I
Sbjct  291  -----GPDDSKG---TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNI  342

Query  354  DLNGDGGRKMREATRDKVGKAMAIVLFE------------------------KGKGEVLT  389
            +L+G+GG  M  ATR +VG++MA++++E                        K    +++
Sbjct  343  NLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIIS  402

Query  390  VATIRSELGSRFQITGMGSPEaasdlalllragslaaPMDIIEERTIGPQLGADNIKKGF  449
            +ATI+S LGS+F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGP LGADNI KG 
Sbjct  403  LATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGV  462

Query  450  DSVLYGFLAMAIFMVIYYQLFGFFsalalsvnvlllvallstlqvtltlpgiaaialalg  509
            D+ L G L +++F++  Y++FG+++++AL+ N+++L+AL+S L  TLTLPGIA+I L++G
Sbjct  463  DASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMG  522

Query  510  MAIDSNVLINERIREELRAGNSPQAAIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAI  569
            MA+D+NVLI  RIREE+  G + Q AI+ GFDRA ++ILD+N+TTL+ G  L+  G+G++
Sbjct  523  MAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPV  582

Query  570  RGFAVVHCLGILTSMFSAVFFSRGVVNLWYG  600
            +GFAV   LGI+TSMF+A+  +R++VNL YG
Sbjct  583  KGFAVTMSLGIFTSMFTAIMVTRAMVNLIYG  613

570) secD in NC_009831


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  336 bits (1261),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 250/624 (41%), Positives = 420/624 (68%), Gaps = 37/624 (5%)

Query  9    VLNHYSVWKYVVLVITFIIMLFSALPTLYGEDAAIQI-GAKAGLNLTPQALNRV---LTD  64
            +LN Y++WKYV+++  +++ ++ + P LY +D+AIQI GA ++L++T   ++R    LTD
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  65   EGIQVK--RITQAEGETVVVLEQETQQSQAKALLNNAVEDDSQLTLSLAPAAPDWLLSMG  122
             GI VK   +++     ++ L ++ +Q  AK ++ +A+ DD  ++L+LA ++P+WL ++G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  123  FTPIKLGLDLRGGVQFLLDVEVEPVYQLHYDAFVDSVRQFTRMQGLNGVSVRLDSEAGVV  182
             TP+KLGLDL GGV+FLL+V+++   + +   + + V+ + R +    V  R  ++ G V
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEK---VRYRSLPQLGNV  177

Query  183  ITMP--DTSHRGDIRQFIKTNYPIWQVTNLENRS---LKADFKPDEKVKIRDLTVKQNLQ  237
            I +   D ++R + R +++  +   ++T  E  +   L+  + P     IR+ ++KQNL 
Sbjct  178  IQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLT  237

Query  238  IMRSRIEQLGITEALVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYEVKDAGSVNA  297
             +R+R+++LG++E+LVQRQG +RI +ELPGVQD A AK ++G TA+L F    +++  ++
Sbjct  238  TVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKG  297

Query  298  KI----LKDKSELPVYVARKPVLGGEHIVDARASLGEMGMPEVVIHLDRAGGKVMSDFSR  353
                  +++ +  +  V R  ++ G+++ DA+AS++E G P+V I+LD  GG +MS  +R
Sbjct  298  TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATR  357

Query  354  DNIGKPMATSYSE------YSRDEQGKV---------TQSTEVISVATIQSQLGDRFSIT  398
             N+G++MA  + E      Y+R+    V          +   +IS+ATIQS LG +F IT
Sbjct  358  SNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRIT  417

Query  399  GAGDYSqaqqlalllraGSMTAPVTIVEERTIGPSLGAENITNGFSALGL-GMAMTLLFM  457
            G  + +++ +LALLLRAG+++AP+ + EERTIGPSLGA+NIT+G  A +L GM    LF+
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA-SLWGMLFVSLFI  476

Query  458  GLWYRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERI  517
               YR +G +A VAL  NMV+L++L++L+ GA LTLPGIAG+VLT+GMAVD+NVLIF RI
Sbjct  477  MAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRI  535

Query  518  KDKLKEGRGFAHAIDRGFDSAISTIFDANFTTMITAVVLYSIGNGPIQGFAltlglgllt  577
            ++ + +G    +AI  GFD A ++I+DAN+TT++ + +L+++G GP++GFA+T++LG++T
Sbjct  536  REEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFT  595

Query  578  SMFTGIFASRALINWVY-GRDFSR  600
            SMFT+I  +RA++N +Y GRDF +
Sbjct  596  SMFTAIMVTRAMVNLIYGGRDFKK  619

571) secD in NC_009659


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  336 bits (1260),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 270/633 (43%), Positives = 434/633 (69%), Gaps = 41/633 (6%)

Query  1    MNRYPLWKYiiiavalllgvlYTLPNFFGESPAVQISSAKATVKVDSSLMSQVEQALKKD  60
            +N+YPLWKY++I   L++G +Y+ PN++ + +A+QIS+A ++++V  + + +  +AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GIQYDGIVYETIGTQGTVRVRFPNTDIQFKAKGILEKDLNTDPEDPTYLVAFNLLPNTPG  120
            GI   +      G  G +R+  ++ + Q+ AK+++ K L  D     Y+VA+NL   TP 
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLQSLNAAPMYLGLDLRGGVHFLMQVDTKAVMNKRVLGLQASARSILRDKNIRHAGISRS  180
            WL+++ A+PM LGLDL GGVHFL++VD    ++ R+   ++  +++LR  ++R  ++++ 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GDSVEILFRDADTRNKARTVLTNELRELVLTDAGSGEDLKLVGALNPTALKQTVEDAVQQ  240
            G+ +++ F D   R++AR+++ + + ++ +T A       L  AL P+ L +  E +++Q
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NITTLSKRVNELGVTEPLIQRQGADRIVVQMPGVQDVSRAKDIIGKTATLEVRL-VDETV  299
            N+TT+ +RVNELGV+EPL+QRQGA+RIVV++PGVQD + AK I+GKTA LE RL  +   
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  300  TRGTEETAAIPFGSELFKVGKNAPVVLYKDPIITGEYISSASASFDQNHQPSVSIDLNGD  359
            ++GT E     F    F+ G  ++  + ++ IITG+ ++ A ASFD++ +P V+I+L+G+
Sbjct  295  SKGTTEM----FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  360  GGRRMREATRTRVGKAMAIVLFE------------------------KNKGEVLTVATIR  395
            GG  M  ATR+ VG++MA++++E                        K+   ++++ATI+
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  396  DELGARFQITGMGsaeaasdlalllragslaaPMEIIEERTIGPQLGAENITKGFDATLY  455
              LG++F+ITG+ +   +S+LALLLRAG+LAAPM + EERTIGP LGA+NITKG DA+L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  456  GFIAIGIFMIIYYRAFGFFSVFalavnlmlliallsllqatltlPGIAAIALTLGMAIDA  515
            G + +++F++  YR FG+++  ALA N+++L+AL+SLL ATLTLPGIA+I LT+GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  516  NVLINERIREELRAGHSPQTAISMGFERAWATILDSNVTTMIAGLALLIFGSGAVRGFAV  575
            NVLI  RIREE+  G + Q AIS GF+RA ++ILD+N+TT++ G  L+  G+G+V+GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  576  VHCLGILTSIFSAVFVSRGVVNLWYGRK--KKL  606
               LGI+TS+F+A+ V+R++VNL YG +  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

572) MYA_0627 in NC_017920


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  335 bits (1258),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 266/632 (43%), Positives = 431/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDSATLSQVEAALASA  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++  A + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKSLNTDPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTAIHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDATDARALLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L     + +ALLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVVNFSDAQTAEDALKALAASITELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
            ++ + + F+D    E+A   +  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQAPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + +++I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRSVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMVAYYMLFGvisviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+I+ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGIVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

573) secD in NC_009256


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  335 bits (1258),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 266/632 (43%), Positives = 431/632 (69%), Gaps = 40/632 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDSATLSQVEAALASA  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++  A + +   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKSLNTDPNDPQYVVALNLQSASPR  120
             I     ++ + +  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTAIHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDATDARALLRDKNIRDGGVSRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L     + +ALLR  ++R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVVNFSDAQTAEDALKALAASITELQWAtqpggggtqvvgtftpAVQKSVEDAALKQ  240
            ++ + + F+D    E+A   +  ++T+++ +     G   +  ++TPA    + + ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT  300
            NLTT++NRVNELGV+EP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+     
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-----  289

Query  301  HPNPNDPVPPGEEL-FTQGNQAPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG  359
             + P+D+    E + F +G +++  + +++I+TGD++ DA A+FDEH RP VNI LD+ G
Sbjct  290  -AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHG  348

Query  360  GRSVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQS  395
            G  +   +R N+G++MA++++E                        K    ++++ATIQS
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  396  ELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKMGVHSVIWG  455
             LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +WG
Sbjct  409  PLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWG  468

Query  456  FCAIAVFMVAYYMLFGvisviglsvnllllvavlslMQatltlpgiaaialalgmaiDSN  515
               +++F++A Y +FG+I+ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+N
Sbjct  469  MLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDAN  528

Query  516  VLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIV  575
            VLI  R+REE+  G   Q AI  G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+ 
Sbjct  529  VLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVT  588

Query  576  HCLGILTSMFSAVFFSRGIVNLWYGGR--KKL  605
              LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  589  MSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

574) SCc_466 in NC_016632


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  334 bits (1255),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 274/628 (44%), Positives = 453/628 (73%), Gaps = 23/628 (3%)

Query  1    MLNRYPLWKYlmliiviligiiyalPNFYGENLALQVTG-TYGLSVNKTTLDQVNTILKQ  59
            MLN+YPLWKY++++ V+++G+IY+ PN+Y ++ A+Q++G + +L V ++ +D+    L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   NHIANKSITLKDSII--LVCFNDSNTQLRAHETLIRELGDKFIVALNLSPVTPSWLTMLG  117
              I+ K+ +L ++    L+ ++  + QL A + + + LGD ++VALNL+  TP+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  AKPMKLGLDLRGGMHFLMEVDI-KSIISKLQEQTVSDLRNMLQEKYIPYVSIRKLGKKNV  176
            A PMKLGLDL GG+HFL+EVD+ K+I ++L+    ++++ +L+   + Y S+ +LG+  +
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYE-GEVKALLRKEKVRYRSLPQLGN-VI  178

Query  177  EVRFSNDITRNKAIRYISQYQHDLILYSKNNNTLEV---NLVDARLRQEREYAVQQNITI  233
            ++ F++D  R++A   + +   D+ + + + N + V    L  A+L + REY+++QN+T 
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  234  LRNRVNQLGITEPLVQRQGDNYIIVELPGIQDTARAKEILGTTATLEFRLVNPNTTTNSK  293
            +RNRVN+LG++EPLVQRQG N I+VELPG+QDTA AK ILG TA LEFRL       +SK
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--GAGPDDSK  296

Query  294  VPDDSEIKYTRDMHPMMLYKHA-ILTGDHIINSTYSINEYNQPQVNITLDNKGGALMSNF  352
               +  + +  + +P     ++ I+TGD++ ++  S++E  +PQVNI LD  GG LMS  
Sbjct  297  GTTEM-FEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRA  355

Query  353  TKDNIGRLISTLFVEYKDSG---KKDTNG--RAILVK----HEEIINVANIQSRIGNNFR  403
            T+ N+GR ++ +F+E + +    ++  NG  + + V+    +  II++A IQS +G++FR
Sbjct  356  TRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFR  415

Query  404  ITGLANANEAHQLALFLRSGALRAPMQIIEERIIGPTLGHQNITQGIEACVssiiasiiF  463
            ITGL    E+ +LAL+LR+G+L APM + EER IGP+LG +NIT+G++A + +++   +F
Sbjct  416  ITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLF  475

Query  464  MIAWYRIFGiiatialiinlvlivsimsllPGVTLTMPGIAGILLILAVAVDANVLINER  523
            ++A YR+FG+IAT+AL +N+V+++++MSLL G TLT+PGIAGI+L +++AVDANVLI  R
Sbjct  476  IMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSR  534

Query  524  IKEELKNGRSVQQAIHEGYKGAFSSiidanittlitaiilytMGTGSLKGFAITTIIGVL  583
            I+EE+ NG +VQ+AI EG+  A+++I+DAN+TTL+ + IL++MGTG++KGFA+T  +G++
Sbjct  535  IREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIF  594

Query  584  TSMFTTIIGTRAIVNLLYCGKHINKLSI  611
            TSMFT+I+ TRA+VNL+Y G++++KL I
Sbjct  595  TSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

575) D521_1773 in NC_020417


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  334 bits (1255),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 272/636 (43%), Positives = 428/636 (68%), Gaps = 45/636 (7%)

Query  1    MNRYPLWKYIVILFALLIGGLYSLPNFYGEAPAVQVSSAKPTIKVDLATQSRVEKILTDD  60
            +N+YPLWKY++IL  L++G +YS PN+Y + +A+Q+S+A  +++V  A   R  K LTD 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NISNTGIFFESTGSVGSIKIRFSNTDIQLRARdllqqklnldqnEPNFTVALNLLSNTPS  120
             I+  +  +   G  G +  R+S+ + QL A+D++++ L       ++ VALNL   TP+
Sbjct  62   GIPVKASSLAENGKGGLL--RLSKQEDQLPAKDVVRKAL-----GDDYVVALNLARTTPN  114

Query  121  WLNALNALPMPLGLDLRGGVYFLLQVDMKGAVQKKVTSLATDIRSQLRDKSIRQQGIERG  180
            WL  + A PM LGLDL GGV FLL+VDM  A++ ++     ++++ LR   +R +++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  QDSITLTFGSTEDAEKARSVLMTSQPDLTWQIKPTGLS--PKLVGEFKPTALKEIQDNAV  238
             + I L FG   + E+AR+++  +  D   +I P+ L+  P L   + P+ L EI++ ++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  239  KQNIVTLNKRVNELAVKEPVIQQQGAERIVVQLPGVQDTARAKDIIGRTATLESRLADPI  298
            KQN+ T+ +RVNEL+V EP++Q+QGA+RIVV+LPGVQDTA AK I+G+TA LE RL+   
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG-  291

Query  299  VSTIAIGETPPPGMDVFRF--GENRQGVFKKSVIFSGDRITDASAGFDQNQRPAVNISLD  356
                   + +    ++F F  G    +   +++I++GD++TDA A+FD++ RP VNI+LD
Sbjct  292  ------PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLD  345

Query  357  AAGGRVMQEVTRENIGKPMGMILFE------------------------KGKGEVLTIAT  392
            + GG +M   TR N+G++M++I++E                        K    ++++AT
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  393  IQGEFGSKFQITGQPTTESANDlalllragslaaPMEIIEERTIGPSLGAENIEKGFKSL  452
            IQ+ +GS+F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGA+NI KG  + 
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  453  IIGFGAISIFMIAYYLLFGTFsvvalavnllllisvlsmlqaTLTLPgiaamalalgmai  512
            + G   +S+F++A Y +FG ++ VALA N+++L++++S+L ATLTLPGIA++ L++GMA+
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  513  DSNVLINERIREELRNGAAPQTAIAVGFDKAWATILDSNVTTLIAGLALLAFGSGPIKGF  572
            D+NVLI  RIREE+ NG + Q AI+ GFD+A ++ILD+N+TTL+ G  L+A G+GP+KGF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  573  AVVHCLGILTSMFSAVFFSRGLVNLWYGRGKKVQKL  608
            AV   LGI+TSMF+A+  +R++VNL YG G+  +KL
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYG-GRDFKKL  620

576) secD in NC_010524


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 256/637 (41%), Positives = 423/637 (67%), Gaps = 50/637 (7%)

Query  1    MNRYPWWKYLILAIAVLVGSLYTLPNFFGEAPAVQVSSGKATVKVDASLVPRVQQALAGA  60
            +N+YP WKY+++   ++VG +Y+ PN++ + +A+Q+S++ ++++V  + V R  +AL++A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GLSPDFVQL--EGLSVRARFGDTDTQLKARDAVVKALNPDPSDPSYIVALNLISRSPQWL  118
            G++     L  +G +   R++  + QL A+D V KAL  D     Y+VALNL   +P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TAMRALPMYLGLDLRGGVHFLMQVDMKAALTKKAESLTGDLRALLRDKSIRHAGIVRNGD  178
              + A PM LGLDL GGVHFL++VDM  A+  +     G+++ALLR   +R  ++ + G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  GVEVRLRDAPTQARALALLREQQPDLLWVESTDGTEFK----LAGTLKPEAARKVQEQAV  234
             +++ + D + + +A AL+R    D+        +E++    L  +L P     ++E ++
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDF----EITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  235  TQNINTLHNRINELGVAEPVIQQQGLDRVVVQLPGVQDVAKAKDIIGRTATLEVRLVDDS  294
             QN+ T++NR+NELGVAEP++Q+QG +R+VV+LPGVQD A AK I+G+TA LE RL  ++
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  295  TEAQAALSGGGPVPFGTERYTERGARAIIVKRQVILTGENLTDAQAGFDENQQPAVHLTL  354
             +++     G    F    + E G  A  V R +I+TG+++TDA+A+FDE+ +P V++ L
Sbjct  293  DDSK-----GTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  355  DARGARIFRDVTRENINKRMAILLFE------------------------KGKGEVVTAP  390
            D++G+ +    TR N+ + MA++++E                        K    +++ +
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  391  VIRSEIGGGRVQISGSMSPVESADTALLLRAGSLAAPMEIIEERLIGPSLGAENIAKGFD  450
             I+S + G++ +I+G  +  ES++ ALLLRAG+LAAPM + EER IGPSLGA+NI+KG D
Sbjct  405  TIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  451  SVLYGFVAIAIFMCCYYLLFGVFstlslgvnllllvavlsMMQATLTLPGIAAIALVLGM  510
            + L G + +++F+   Y +FG+++T++L+ N+++L+A++S++ ATLTLPGIA+I L +GM
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  511  AIDANVLINERVREELRAGASPQMAIHTGYERAFATILDSNVTTLIAGLALLAFGSGPVR  570
            A+DANVLI  R+REE+  G + Q AI  G++RA+++ILD+N+TTL+ G  L+A G+GPV+
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  571  GFAVVHCLGILTSMFSAVMFSRGLVNLWYGRK--KKL  605
            GFAV   LGI+TSMF+A+M +R++VNL YG +  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

577) secD in NC_014733


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 263/623 (43%), Positives = 417/623 (67%), Gaps = 39/623 (6%)

Query  1    MLITLVLGVVYSLPNLFGESPAVQVSTAKSSAKLDPALLGQVEDILKQEKITYEAVFL--  58
            +L  LV+G +YS PNL+ + +A+Q+S A ++ ++  A +++    L +  I   A  L  
Sbjct  13   ILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAE  72

Query  59   DTNGVKVRFENADTQINAKDVLQGKLGKDYVVALNLISRSPSWLRSIGALPMYLGLDLRG  118
            + +G  +R+ + + Q+ AKDV++  LG DYVVALNL   +P+WLR++GA PM LGLDL G
Sbjct  73   NGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSG  132

Query  119  GVHFLLQVDMKAALDKAAERYVGDFRSALRKERVAYMGVSREGQAVQVRFSSAAELAKAQ  178
            GVHFLL+VDM  A+D     Y G+ ++ LRKE+V Y ++++ G+ +Q+ F+  AE  +A+
Sbjct  133  GVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGDDAEREQAR  192

Query  179  KILNKEYPDLTFRTLDSGNDKLLIATLNLQAQKRIQEFALKQNIQTLHNRVNELGVAEPI  238
             ++ K + D+ +   +     +L  +L       I+E+++KQN+ T++NRVNELGVAEP+
Sbjct  193  ALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPL  252

Query  239  IQQQGLDRIVIQLPGVQDTAKAKEILGRTATLEIRMVDEEKSDMTTLDKASKGQVPFGDE  298
            +Q+QG +RIV++LPGVQDTA AK ILG+TA LE+R+         T +        F   
Sbjct  253  VQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEM-------FE--  303

Query  299  YYVERNGQPILVKKNVVLTGDYITDAGPGLDQQNGESVVHVTLDGRGARIFKQATKENVG  358
             + E    +  V + +++TGD +TDA +++D++ G + V++ LDG+G+ +  +AT+ NVG
Sbjct  304  -FREGGRPAAAVERGLIITGDQVTDAKASFDEH-GRPQVNINLDGHGGELMSRATRSNVG  361

Query  359  KRMAILLIE------------------------KGQAEVITAPVIREEIGGGRVQISGMA  394
            + MA+++IE                        K +  +I+ + I+  + G++ +I+G+ 
Sbjct  362  RSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL-GSQFRITGLN  420

Query  395  NVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFAAIAVFMIIYY  454
               E+++++LLLRAG+LAAPM + EERT+GPS+G +NI +G +++LWG   +++F++  Y
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIY  480

Query  455  MLFgsvsvlalgvnlllltavlsllqatltlpglaaIALTLGMAIDANVLINERIREELR  514
             +FG ++ +AL+ N+++L A++SLL ATLTLPG+A+I LT+GMA+DANVLI  RIREE+ 
Sbjct  481  RFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA  540

Query  515  NGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHVLGILTSMFSA  574
            NG T Q AI  G+DRA+ +ILD+N+TT++ G  LF  G+GPVKGFAV   LGI+TSMF+A
Sbjct  541  NGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA  600

Query  575  VVVSRALVNLIYGYRRKISKLSI  597
            ++V+RA+VNLIYG  R + KL I
Sbjct  601  IMVTRAMVNLIYG-GRDFKKLWI  622

578) secD in NC_019382


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 264/641 (42%), Positives = 439/641 (69%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V QA +++  + + +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPP  120
             +P  +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSVLRDQKADVGAI  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V+++LR +K    ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA  240
             + G+ +   F+   +R++AR ++R  + D+++T +   G   L   L PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RI+V+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQSALAAGSVPFGLERYTDRDG-RPLL-VRRQVVLTGENLQDAQPGRDGQTQQPAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + P V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNVGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR NVG+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIGGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIA  453
            ++ + I+S +G+ Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFYSTLYGfiaiaifiiVYYHLFGIFSTIGltvnvllllallsmlqatltlPGIAAIAL  513
            KG  ++L G + +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+DANVLI  RIREE+ NG T Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

579) secD in NC_018518


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 264/641 (42%), Positives = 439/641 (69%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V QA +++  + + +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLPVDSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPP  120
             +PV +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAI  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V++ LR +K    ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA  240
             + G+ +   F+   +R++AR ++R  + D+++T +   G   L   L PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RI+V+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQSALAAGSVPFGLERYTDRDG-RPLL-VRRQVVLTGENLQDAQPGRDGQTQQPAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + P V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR N+G+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIGGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIA  453
            ++ + I+S +G+ Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFYSTLYGfiaiaifiiVYYHLFGIFSTIGltvnvllllallsmlqatltlPGIAAIAL  513
            KG  ++L G + +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+DANVLI  RIREE+ NG T Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

580) secD in NC_017223


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 264/641 (42%), Positives = 439/641 (69%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V QA +++  + + +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLPVDSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPP  120
             +PV +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAI  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V++ LR +K    ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA  240
             + G+ +   F+   +R++AR ++R  + D+++T +   G   L   L PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RI+V+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQSALAAGSVPFGLERYTDRDG-RPLL-VRRQVVLTGENLQDAQPGRDGQTQQPAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + P V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR N+G+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIGGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIA  453
            ++ + I+S +G+ Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFYSTLYGfiaiaifiiVYYHLFGIFSTIGltvnvllllallsmlqatltlPGIAAIAL  513
            KG  ++L G + +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+DANVLI  RIREE+ NG T Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

581) secD in NC_002929


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 264/641 (42%), Positives = 439/641 (69%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V QA +++  + + +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLPVDSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPP  120
             +PV +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAI  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V++ LR +K    ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA  240
             + G+ +   F+   +R++AR ++R  + D+++T +   G   L   L PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RI+V+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQSALAAGSVPFGLERYTDRDG-RPLL-VRRQVVLTGENLQDAQPGRDGQTQQPAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + P V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR N+G+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIGGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIA  453
            ++ + I+S +G+ Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFYSTLYGfiaiaifiiVYYHLFGIFSTIGltvnvllllallsmlqatltlPGIAAIAL  513
            KG  ++L G + +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+DANVLI  RIREE+ NG T Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

582) secD in NC_016589


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  331 bits (1243),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 273/633 (44%), Positives = 435/633 (69%), Gaps = 43/633 (6%)

Query  1    MNRYPLWKYVVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVKLDSSTLSTVEAALAAS  60
            +N+YPLWKYV++L  LV+G++Y+ PN++ + +A+Q+S++ +++++  + +     AL+ +
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIKADEVTFDNAQLNANIRVRLKDTDTQLHVKDLLTKALNADPSDPQYIVALNLQSASPR  120
             I     ++ +   ++ + +RL   + QL  KD++ KAL  D     Y+VALNL  ++P 
Sbjct  62   GIPVKASSLAENG-KGGL-LRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDAADARTYLRDRNIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A++ +L    ++ ++ LR  ++R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GQSVAVNFSDQAAADNARTLLQTGVSELQWTTRQGGDGFQVV-GTFAPDAQKTVEDAALK  239
            G+ + + F+D+A  ++AR+L++   ++++  T    +G+ V+  +++P     + + ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPIN  299
            QN+TT++NRVNELGVAEP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGA---  290

Query  300  TYIGPNDAVPPGDE-AFKQGDR-IVLLRKQVIFTGDRIVDASAGFDEHQRPSVNIRLDSA  357
               GP+D+    +   F++G+R    + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  291  ---GPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  358  GGRAVSAVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQ  393
            GG  +S  +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  394  SELGDRFSITGQPTPQAATDlalllragslaaPMDIIEERTVGPSLGADNIKKGFDSVTY  453
            S LG +F ITG      +++LALLLRAG+LAAPM + EERT+GPSLGADNI KG D+   
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  454  GFAAIAVFMIAYYllfglfsmlslsvnllllvavlsllqatltlpgiaaialalgmaida  513
            G   +++F++A Y +FGL++ ++L+ N+++L+A++SLL ATLTLPGIA+I L++GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  514  NVLINERIREELRNGAPPQTAIQEGFKHAWATILDSNVTTLIAGLALLAFGSGPVRGFAV  573
            NVLI  RIREE+ NG   Q AI EGF +A ++ILD+N+TTL+ G  L+A G+GPV+GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  574  VHCIGILTSMFSAVFFSRGLVNLWYGGK--KKL  604
               +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

583) secD in NC_002927


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  330 bits (1238),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 263/641 (42%), Positives = 438/641 (69%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V QA +++  + + +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPP  120
             +P  +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAI  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V++ LR +K    ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA  240
             + G+ +   F+   +R++AR ++R  + D+++T +   G   L   L PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RI+V+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQSALAAGSVPFGLERYTDRDG-RPLL-VRRQVVLTGENLQDAQPGRDGQTQQPAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + P V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR N+G+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIGGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIA  453
            ++ + I+S +G+ Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFYSTLYGfiaiaifiiVYYHLFGIFSTIGltvnvllllallsmlqatltlPGIAAIAL  513
            KG  ++L G + +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+DANVLI  RIREE+ NG T Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

584) secD in NC_018828


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  330 bits (1238),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 263/641 (42%), Positives = 438/641 (69%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V QA +++  + + +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPP  120
             +P  +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAI  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V++ LR +K    ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA  240
             + G+ +   F+   +R++AR ++R  + D+++T +   G   L   L PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RI+V+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQSALAAGSVPFGLERYTDRDG-RPLL-VRRQVVLTGENLQDAQPGRDGQTQQPAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + P V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR N+G+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIGGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIA  453
            ++ + I+S +G+ Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFYSTLYGfiaiaifiiVYYHLFGIFSTIGltvnvllllallsmlqatltlPGIAAIAL  513
            KG  ++L G + +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+DANVLI  RIREE+ NG T Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

585) secD in NC_002928


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  330 bits (1237),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 263/641 (42%), Positives = 438/641 (69%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V QA +++  + + +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLPADSVYYEQNGTLGAVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPP  120
             +P  +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAI  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V++ LR +K    ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA  240
             + G+ +   F+   +R++AR ++R  + D+++T +   G   L   L PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RI+V+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQSALAAGSVPFGLERYTDRDG-RPLL-VRRQVVLTGENLQDAQPGRDGQTQQPAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + P V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR N+G+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIGGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIA  453
            ++ + I+S +G+ Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFYSTLYGfiaiaifiiVYYHLFGIFSTIGltvnvllllallsmlqatltlPGIAAIAL  513
            KG  ++L G + +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+DANVLI  RIREE+ NG T Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

586) secD in NC_015856


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  329 bits (1235),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 257/634 (41%), Positives = 429/634 (68%), Gaps = 41/634 (6%)

Query  1    MNRYPLWKYILIVIALLFGVLYTIPNLFGESPAVQVSSGKSTLKIDSSLADRVSQVLQQG  60
            +N+YPLWKY+LI+  L+ G +Y+ PNL+ + +A+Q+S++ ++L++  +  DR ++ L ++
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLLTDSVTFENAGAQGTVRARFHDTDTQFKAKALLEQTLNTDPTDPVYVVAFNLVPNTPH  120
             +   + ++ + G  G +R  +   + Q+ AK ++ ++L  D     YVVA+NL   TP+
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLQAIHAFPMYLGLDLRGGVHFLMQVDTKAVINKRLQGLQASARTELRDKDIRYSGINRN  180
            WL+ + A PM LGLDL GGVHFL++VD    I+ RL+  ++  ++ LR   +RY ++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GDTIEISFRDQDTLNKALNILAPQLSEMSIQAVLPVAGADPMLSASLKPEALKQIVDNGV  240
            G+ I+++F D+   ++A  ++   +++  I +  +   + P+L  +L P  L +I + ++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITP--AELNGIPVLRMALTPAKLAEIREYSI  232

Query  241  TQNITTLSKRVNELGVSEPIIQRQGADRIVVQMPGVQDVSRAKDIIGRTATLEVRMVDES  300
             QN+TT+ +RVNELGV+EP++QRQGA+RIVV++PGVQD + AK I+G+TA LE R+   +
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---G  289

Query  301  VTRGTEATAAVPFGSELFKVGKNAPVVLYKDPVLTGDYISSAAVSFDQNQQPAVSIDLNG  360
               +    ++  F    F+ G  ++  + ++ ++TGD ++ A  SFD++ +P V+I+L+G
Sbjct  290  AGPDDSKGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  361  DGGRKMRDATRGKVGKAMAIVLFE------------------------KGKGEVLTVATI  396
            +GG  M  ATR++VG++MA++++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  397  QSELGSRFQITGMGSPEaaadlalllragslaaPMTIIEERTIGPQLGAENIKKGFDSTM  456
            QS LGS+F+ITG+ +   +++LALLLRAG+LAAPM + EERTIGP LGA+NI KG D+++
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  457  YGFAVIAVFMIIYYMLFGlfsvlalsvnlllliavlstlqatltlpgiaaialtlgiaiD  516
             G   +++F++  Y +FGL++ +AL+ N+++L+A++S L ATLTLPGIA+I LT+G+A+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  517  ANVLVNERIREELRNGNSPQAAISIGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFA  576
            ANVL+  RIREE+ NG + Q AIS GFDRA ++ILD+N+TTL+ G  L+  G+G+++GFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  577  VVHCLGILTSIFSAVFVSRGFANLWYGRK--KKL  608
            V   LGI+TS+F+A+ V+R+  NL YG +  KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

587) Pnec_1508 in NC_010531


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  328 bits (1232),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 261/626 (42%), Positives = 421/626 (68%), Gaps = 40/626 (6%)

Query  1    MNRYPLWKYLVIAVALLIGGLYSLPNFYGEAPAVQVSSTKPTIKVDFATQSRVEKILTEA  60
            +N+YPLWKY++I   L++G +YS PN+Y + +A+Q+S++  +++V  A   R  K LT+A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NINNTGVFFEVAGNVGSIKVRFDNTDIQLRARDLLQQKLNVDQNDPNYTVALNLLSNTPG  120
             I   +  +   G+ G +  R+ + + QL A+D++++ L       +Y VALNL   TP 
Sbjct  62   GIPVKASSLAENGKGGLL--RLSKQEDQLPAKDVVRKALG-----DDYVVALNLARTTPN  114

Query  121  WLNAMNALPMPLGLDLRGGVYFLLQVDMKGAVQKKVTSLATDIRGQLRDKNIRHQGIERG  180
            WL  + A PM LGLDL GGV FLL+VDM  A++ ++     ++++ LR  ++R +++ + 
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  ADFISINFGSTADAEATRSVLMTAQPELIWQVKPTGLS--PKVVGEFKSTALKEIHDNAV  238
            ++ I + FG  A+ E +R+++  +  +   ++ P+ L+  P +   + ++ L EI++ ++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  239  KQNIITLNKRVNELAVKEPVIQQQGAERIVVQLPGVQDTARAKDIIGRTATLESRLADPL  298
            KQN+ T+ +RVNEL+V EP++Q+QGA+RIVV+LPGVQDTA AK I+G+TA LE RL+   
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG-  291

Query  299  VTTIAIGETPPPGMDTFRFGENRLGVFKKSVIFSGDRITDASAGFDQNQRPSVNISLDAA  358
                + +      M  FR G    +   +++I++GD++TDA A+FD++ RP VNI+LD+ 
Sbjct  292  ----PDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRVMQEVTRENIGKPMGMILFE------------------------KGKGEVLTIATFQ  394
            GG +M   TR N+G++M++I++E                        K    ++++AT+Q
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SEFSSKFQITGQPTTESANDlalllragslaaPMEIIEERTIGPSLGAENIEKGFKSLLI  454
            S ++S+F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGA+NI KG  + L 
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFAAIAISMMAYYLLFGafsvvalavnllllisvlsmlqaTLTLPgiaamalalgmaiDS  514
            G   +++ +MA Y +FG ++ VALA N+++L++++S+L ATLTLPGIA++ L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVLINERIREELRNSASPQAAIAVGFDKAWATILDSNVTTLIAGLALLAFGSGPIKGFAV  574
            NVLI  RIREE+ N+ + Q AI+ GFD+A ++ILD+N+TTL+ G  L+A G+GP+KGFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYG  600
               LGI+TSMF+A+  +R++VNL YG
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYG  613

588) secD in NC_018829


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  328 bits (1232),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 262/641 (41%), Positives = 438/641 (69%), Gaps = 51/641 (7%)

Query  1    MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENA  60
            +N+YPLWKY+ +L  +V+G++Y+ PN+Y + +A+Q+S+A ++++V QA +++  + + +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPP  120
             +P  +    +NG  G +R  ++  + QL A+D++ ++L       +Y VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGD-----DYVVALNLARTTPN  114

Query  121  WMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAI  180
            W+R++G   + PM LGLDL GGVHFLL+VDM+ A+ AR     ++V++ LR +K    ++
Sbjct  115  WLRNVG---ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL  171

Query  181  ERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGSKLQLTGMLNPAAVTRVQDTA  240
             + G+ +   F+   +R++AR ++R  + D+++T +   +   L   L PA ++ +++ +
Sbjct  172  PQLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYS  231

Query  241  LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDD  300
            +KQN+ T++NR+NELGVAEP++Q+QGA+RI+V+LPGVQD A AK +LG+TA LE+R+  +
Sbjct  232  IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAG  291

Query  301  SPAAQSALAAGSVPFGLERYTDRDG-RPLL-VRRQVVLTGENLQDAQPGRDGQTQQPAVH  358
            +  ++++          E +  R+G RP   V R +++TG+++ DA+++ D + + P V+
Sbjct  292  PDDSKGTT---------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVN  341

Query  359  LTLDSKGARIFRDVTRDNIGKRMAILL-------------------------FENGKGEV  393
            + LD+ G+ +    TR N+G+ MA+++                         F ++K  +
Sbjct  342  INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDK-KI  400

Query  394  VTAPVIRSEIGGGQVQISGSMtaeeaadtalllragalaaPMSIIEERTIGPSLGADNIA  453
            ++ + I+S +G+ Q +I+G     E+++ ALLLRAG+LAAPM + EERTIGPSLGADNI+
Sbjct  401  ISLATIQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIT  459

Query  454  KGFYSTLYGfiaiaifiiVYYHLFGIFSTIGltvnvllllallsmlqatltlPGIAAIAL  513
            KG  ++L G + +++FI+  Y++FG+++T++L+ N+++LLAL+S+L ATLTLPGIA+I L
Sbjct  460  KGVDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVL  519

Query  514  TLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGS  573
            T+GMA+DANVLI  RIREE+ NG T Q+AI +GF+RA  +ILD+NLTTL+VG  L+A G+
Sbjct  520  TMGMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGT  579

Query  574  GPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRK--KKL  612
            GP++GFAV   LGI TSMF++++  RA+ NL YG +  KKL
Sbjct  580  GPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

589) secD in NC_021884


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1226),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLSALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

590) secD in NC_012695


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1226),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

591) bgla_1g06440 in NC_015381


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1227),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 265/633 (42%), Positives = 439/633 (70%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSGTLGqvqaalaaa  60
            +N+YP+WKYV+++  L +G++Y+ PN+Y + +A+Q+S++ +++++  + +++   AL+ A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   qvaPDDITFDNSANNANIRVRLKDTDTQLRVKDLLQKALNSDPSDPQYVVALNLQSASPR  120
             ++    ++ ++++ + +R  L   + QL  KD+++KAL  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARSQLRDKGIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DLSVVANFADQDTAEQARRFLAGSITELQWATQPGGGGYQVV-GTFSPAVQATVEDAALK  239
            +  +   F+D+   EQAR ++  ++T+++  T +   G  V+  +++PA  A + + ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGRDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  LHPNPNDPVPPGDEL-FTQGNQAPVLLRKSVIFTGDRIIDASAGFDEHQRPSVNIRLDaa  358
              + P+D+    + + F +G +++  + +++I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  ggravravSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQAATDlalllragslaaPMDIIEERTIGPSLGADNIRMGVHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  GV++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFglvsviglsvnllllvaalsMMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FGL++ ++L+ N+++L+A +S++ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVLINERIREELRSGAAPQVAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+ +G + Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCIGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               +GI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

592) secD in NC_006348


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

593) secD in NC_008836


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

594) secD in NC_009080


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

595) secD in NC_008785


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

596) secD in NC_017831


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

597) secD in NC_009076


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

598) secD in NC_007434


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

599) BPC006_I3414 in NC_018527


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

600) secD in NC_006350


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1225),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

601) secD in NC_021036


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1228),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 261/637 (41%), Positives = 437/637 (69%), Gaps = 45/637 (7%)

Query  1    MNRYPLWKYLIVLAALIFGLTYTLPNIFGQTVAVQISSLNVTKKVDANLLSFAEQTLKQA  60
            +N+YPLWKY+++LA L+ G+ Y+ PN++ +  A+QIS+ + + +V    +  A ++L +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIPFENSQIQANGPNNTIRIRFNSPNEQIQARGILERALNPNPEEPNYVVALNLLSATPS  120
             IP   S +  NG    +R+  +  ++Q+ A++++ +AL       +YVVALNL  +TP+
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALG-----DDYVVALNLARTTPN  114

Query  121  WLQSLGANPMALGLDLRGGVHFLLQVDMKGALKSRYNSLNTELRTLFRDSKITAESIQLE  180
            WL+++GA PM LGLDL GGVHFLL+VDM  A+ +R +  + E+++L+R  K+   S+   
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GSTITALFSNEKDANKAKDVIRQRLPELTTQYAEQNGKHVLTSTIAPNEVSRVQDTALKQ  240
            G+ I   F+++ + ++A+ ++R+ + ++    AE NG  VL  +++P  ++ +++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NIVTLHNRINELGVAEPIIQQQGNDRIVVQLPGVQDIAKAKDILGRTATLELRLVDDSPT  300
            N+ T++NR+NELGVAEP++Q+QG +RIVV+LPGVQD A AK ILG+TA LE+RL  ++  
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  301  ALASLASGVVPFGLEKFKGTDGRDILLRRQVILTGENLEDAQAGLDPNDNSPAVNLSLDS  360
            + ++       F    F+  +     + R +I+TG+++ DA+A++D ++  P VN++LD+
Sbjct  295  SKGTTEM----F---EFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDG  346

Query  361  KGSRIFRDVTRDNINKRMAIVLFE------------------------KGKGQVVTSPTI  396
             G+ +    TR N+ + MA++++E                        K   ++++ +TI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  397  RSEIPNGQVMISGHMSSTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEDNIKKGFRST  456
            +S +  +Q  I+G  +  E++++ALLLRAG+LAAPM + EERTIGPSLG DNI KG  ++
Sbjct  407  QSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  457  -WVGFVLIALFMILYYRLIGVFSTlglafnvllllavlsliqatlTLPGIAAIALTLGMA  515
             W G ++++LF++  YR++G+++T++LAFN+++LLA++SL+ ATLTLPGIA+I LT+GMA
Sbjct  466  LW-GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  516  IDANVlinerireelreGVNPQQAINIGFEKAWATIFDSNITSLIVGIALLAFSGPGPIR  575
            +DANVLI  RIREE+ +G+  Q+AI+ GF++A ++I+D+N+T+L+VG  L+A  G GP++
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAM-GTGPVK  583

Query  576  GFAVVHVLGILTSMFSAVVGVRALVNLWYGRK--KKL  610
            GFAV   LGI+TSMF+A++  RA+VNL YG +  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

602) secD in NC_008825


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  327 bits (1228),  Expect = 9e-91, Method: Compositional matrix adjust.
 Identities = 262/631 (42%), Positives = 423/631 (68%), Gaps = 38/631 (6%)

Query  1    MNRYPWWKYailaiallVGLVYTLPNFFGEAPAVQVSSGKATLKVDATVVPRVEQALQAA  60
            +N+YP WKY ++   L+VG++Y+ PN++ + +A+Q+S++ ++L+V  + V R  +AL  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GLQADFVQLDGASIKARFRDTdaqikakdaiakaLNPDPADPGYIVALNLLSRSPTWLRS  120
            G+      L   +  + +R      +  +  AK +   + + +Y+VALNL   +P WLR+
Sbjct  62   GIPVKASSLAENGKGGLLR---LSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRN  118

Query  121  LHALPMYLGLDLRGGVHFLMQVDMKAALTKRADVLTGDIRSLLRDKSIRHAGIAREGNTV  180
            + A PM LGLDL GGVHFL++VDM  A+  R  V  G++++LLR   +R  ++++ GN +
Sbjct  119  VGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVI  178

Query  181  tiafrdaatrtaaraVLTEPLPDLQWSEAARDSEFTLTGSLKAEAARRVQDQAIKQNITT  240
             ++F D A R  ARA++   + D++ + A  ++   L  +L +     +++ +IKQN+TT
Sbjct  179  QLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  241  LHNRINELGVAEPVIQQQGADRVVVQLPGVQDTAKAKDIIGRTATLELRMVDDSaeaaaa  300
            ++NR+NELGVAEP++Q+QGA+R+VV+LPGVQDTA AK I+G+TA LE+R+  ++      
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP----DD  294

Query  301  aTGSGPVPFGAERYVERGGAALIVKRQVILTGDSLTDAQPGFDGQTQEPAVHLTVDAKGA  360
            + G+  + F    + E G +A  V R +I+TGD +TDA+++FD + + P V++ +D+ G+
Sbjct  295  SKGTTEM-FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGG  349

Query  361  RIMRDVSRDNVGKRMAILLFE------------------------KGKGEVVTAPVIRGE  396
             +M   +R NVG+ MA++++E                        K    +++ + I++ 
Sbjct  350  ELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSP  409

Query  397  LGSRFQISGRMTTQEASDTALLLRAGSLAAPMEIVEERTIGPSLGAENIDKGFNSVIYGF  456
            LGS+F+I+G     E+S+ ALLLRAG+LAAPM + EERTIGPSLGA+NI KG ++ + G 
Sbjct  410  LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  457  AAIAAFMCAYYLLFGVFSTIalavnllllvavlSMLQATLTLPGIAAIALTLGMAIDANV  516
              ++ F+ A Y +FG+++T+ALA N+++L+A++S+L ATLTLPGIA+I LT+GMA+DANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  517  LINERVREELRAGASPQAAIHTGYERAWATIFDSNITTLIAGVALLAFGSGPVRGFAVVH  576
            LI  R+REE+  G + Q AI  G++RA ++I+D+N+TTL+ G  L+A G+GPV+GFAV  
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  577  CLGILTSMFSAVLFSRGLVNLWYGRR--KKL  605
             LGI+TSMF+A++ +R++VNL YG R  KKL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

603) secD in NC_009074


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  326 bits (1224),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 266/633 (43%), Positives = 432/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLSALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQSVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

604) secD in NC_007948


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  325 bits (1221),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 258/628 (42%), Positives = 423/628 (68%), Gaps = 44/628 (7%)

Query  1    MNRYPAWKYaiivvalliaalYTLPNFFGEAPAVQISSGKSTVKIDTTTMARVEQALKDV  60
            +N+YP WKY +I+  L+++ +Y+ PN++ + +A+QIS++ +++++  + + R  +AL D 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GITADVIAL--EGTSVKARFGDTDTQLKAKDAVQKALSPDPANPSYVVALNLLSRSPAWL  118
            GI     +L  +G +   R++  + QL AKD V+KAL+ D     YVVALNL   +P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TSLHAFPMYLGLDLRGGVHFMLQVDMQAALTKRAESLSGDIRLSLREKNIRHGGISRNAQ  178
             ++ A PM LGLDL GGVHF+L+VDM+ A+  R     G+++  LR  ++R  ++++ ++
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  AIDIKVRDSETLASAKALIQDQFPDLQTVDVPEGTEYKLTASIKPEAARRIQDQALKQNM  238
             I++   D      A+AL++  F D++           L  ++ P     I++ ++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  VTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDSAEAR  298
             T++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE RL  ++ +++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  299  AAENNTGAVPFGTERF-FERNGQ-AVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTVD  356
            ++          TE F F   G+ A  V + +I+TG+++TDA+++FD + + P+V++ +D
Sbjct  297  GT----------TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  357  AKGGRIMRDTSRENLKKRMAILLFE------------------------KGKGEVLTAPV  392
            + GG +M  ++R N+ + MA++++E                        K    +++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  393  IQSELGNRFQISGSMSVSEANDlalllragslaaPMEIIEERTIGPTLGADNISKGFHSV  452
            IQS LG++F+I+G  + +E+++LALLLRAG+LAAPM + EERTIGP+LGADNI+KG ++ 
Sbjct  406  IQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  453  SWGFVVIVAFMAAYYMLFGLISGlalavnllllvavlSMLQatltlpgmaamalalgmaI  512
             WG + +  F+ A Y +FGLI+ +ALA N+++L+A++S+L ATLTLPG+A++ L++GMA+
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  513  DSNVLINERVREELRNGASAQAAIHAGYERAWATILDSNTSTLIVGLALLAFGSGPVRGF  572
            D+NVLI  R+REE+ NG + Q AI  G++RA ++ILD+N +TL+VG  L+A G+GPV+GF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  573  AVVHCIGILTSMFSAVFFSRGLVNLWYG  600
            AV   +GI+TSMF+A+  +R++VNL YG
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYG  613

605) secD in NC_018108


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  325 bits (1221),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 260/637 (41%), Positives = 435/637 (69%), Gaps = 45/637 (7%)

Query  1    MNRYPLWKYLIVLVALIFGLTYTLPNIFGQTVAVQISSLNVTKKVDANLLSFAEQTLKQA  60
            +N+YPLWKY+++L  L+ G+ Y+ PN++ +  A+QIS+ + + +V    +  A ++L +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIPFENSQIQANGPNNTIRIRFNSPNEQIQARGILERALNPNPEEPNYVVALNLLSATPS  120
             IP   S +  NG    +R+  +  ++Q+ A++++ +AL       +YVVALNL  +TP+
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALG-----DDYVVALNLARTTPN  114

Query  121  WLQSLGANPMALGLDLRGGVHFLLQVDMKGALKSRYNSLNTELRTLFRDSKITAESIQLE  180
            WL+++GA PM LGLDL GGVHFLL+VDM  A+ +R +  + E+++L+R  K+   S+   
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GSTITALFSNEKDANKAKDVIRQRLPELTTQYAEQNGKHVLTSTIAPNEVSRVQDTALKQ  240
            G+ I   F+++ + ++A+ ++R+ + ++    AE NG  VL  +++P  ++ +++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NIVTLHNRINELGVAEPIIQQQGNDRIVVQLPGVQDIAKAKDILGRTATLELRLVDDSPT  300
            N+ T++NR+NELGVAEP++Q+QG +RIVV+LPGVQD A AK ILG+TA LE+RL  ++  
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  301  ALASLASGVVPFGLEKFKGTDGRDILLRRQVILTGENLEDAQAGLDPNDNSPAVNLSLDS  360
            + ++       F    F+  +     + R +I+TG+++ DA+A++D ++  P VN++LD+
Sbjct  295  SKGTTEM----F---EFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDG  346

Query  361  KGSRIFRDVTRDNINKRMAIVLFE------------------------KGKGQVVTSPTI  396
             G+ +    TR N+ + MA++++E                        K   ++++ +TI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  397  RSEIPNGQVMISGHMTSTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEDNIKKGFRST  456
            +S +  +Q  I+G     E++++ALLLRAG+LAAPM + EERTIGPSLG DNI KG  ++
Sbjct  407  QSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  457  -WVGFVLIALFMILYYRLIGVFSTlglafnvllllavlsliqatlTLPGIAAIALTLGMA  515
             W G ++++LF++  YR++G+++T++LAFN+++LLA++SL+ ATLTLPGIA+I LT+GMA
Sbjct  466  LW-GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  516  IDANVlinerireelreGVNPQQAINIGFEKAWATIFDSNITSLIVGIALLAFSGPGPIR  575
            +DANVLI  RIREE+ +G+  Q+AI+ GF++A ++I+D+N+T+L+VG  L+A  G GP++
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAM-GTGPVK  583

Query  576  GFAVVHVLGILTSMFSAVVGVRALVNLWYGRK--KKL  610
            GFAV   LGI+TSMF+A++  RA+VNL YG +  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

606) TEQUI_0365 in NC_014914


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  325 bits (1221),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 260/637 (41%), Positives = 435/637 (69%), Gaps = 45/637 (7%)

Query  1    MNRYPLWKYLIVLVALIFGLTYTLPNIFGQTVAVQISSLNVTKKVDANLLSFAEQTLKQA  60
            +N+YPLWKY+++L  L+ G+ Y+ PN++ +  A+QIS+ + + +V    +  A ++L +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NIPFENSQIQANGPNNTIRIRFNSPNEQIQARGILERALNPNPEEPNYVVALNLLSATPS  120
             IP   S +  NG    +R+  +  ++Q+ A++++ +AL       +YVVALNL  +TP+
Sbjct  62   GIPVKASSLAENGKGGLLRL--SKQEDQLPAKDVVRKALG-----DDYVVALNLARTTPN  114

Query  121  WLQSLGANPMALGLDLRGGVHFLLQVDMKGALKSRYNSLNTELRTLFRDSKITAESIQLE  180
            WL+++GA PM LGLDL GGVHFLL+VDM  A+ +R +  + E+++L+R  K+   S+   
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GSTITALFSNEKDANKAKDVIRQRLPELTTQYAEQNGKHVLTSTIAPNEVSRVQDTALKQ  240
            G+ I   F+++ + ++A+ ++R+ + ++    AE NG  VL  +++P  ++ +++ ++KQ
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  241  NIVTLHNRINELGVAEPIIQQQGNDRIVVQLPGVQDIAKAKDILGRTATLELRLVDDSPT  300
            N+ T++NR+NELGVAEP++Q+QG +RIVV+LPGVQD A AK ILG+TA LE+RL  ++  
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDD  294

Query  301  ALASLASGVVPFGLEKFKGTDGRDILLRRQVILTGENLEDAQAGLDPNDNSPAVNLSLDS  360
            + ++       F    F+  +     + R +I+TG+++ DA+A++D ++  P VN++LD+
Sbjct  295  SKGTTEM----F---EFREGGRPAAAVERGLIITGDQVTDAKASFD-EHGRPQVNINLDG  346

Query  361  KGSRIFRDVTRDNINKRMAIVLFE------------------------KGKGQVVTSPTI  396
             G+ +    TR N+ + MA++++E                        K   ++++ +TI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  397  RSEIPNGQVMISGHMTSTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEDNIKKGFRST  456
            +S +  +Q  I+G     E++++ALLLRAG+LAAPM + EERTIGPSLG DNI KG  ++
Sbjct  407  QSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  457  -WVGFVLIALFMILYYRLIGVFSTlglafnvllllavlsliqatlTLPGIAAIALTLGMA  515
             W G ++++LF++  YR++G+++T++LAFN+++LLA++SL+ ATLTLPGIA+I LT+GMA
Sbjct  466  LW-GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  516  IDANVlinerireelreGVNPQQAINIGFEKAWATIFDSNITSLIVGIALLAFSGPGPIR  575
            +DANVLI  RIREE+ +G+  Q+AI+ GF++A ++I+D+N+T+L+VG  L+A  G GP++
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAM-GTGPVK  583

Query  576  GFAVVHVLGILTSMFSAVVGVRALVNLWYGRK--KKL  610
            GFAV   LGI+TSMF+A++  RA+VNL YG +  KKL
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

607) secD in NC_007984


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  325 bits (1219),  Expect = 4e-90, Method: Compositional matrix adjust.
 Identities = 280/633 (45%), Positives = 439/633 (70%), Gaps = 32/633 (5%)

Query  1    MLNHYPLWKYiilvltlilgiiYALPNLYGEDVAIQITGTH-GVTVSESTLIDIIHILKQ  59
            MLN YPLWKY++++  L++G+IY+ PNLY +D AIQI+G+  ++ V+++ +      L +
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  60   KNIVSKSISLTNGTI--LARFSNSNMQLYAHDTLLKTLGHNYVVALNLAPAVPSWLTMIG  117
              I  K+ SL++     L R+S+ + QL A D + K+LG++YVVALNLA + P+WL  +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  118  ALPIKLGLDLRGGVHFLIEIDMNTVLNNIHKQVIDVFIQE----LRKNNIPYTSISKINN  173
            A P+KLGLDL GGVHFL+E+DM+  ++   K    V+  E    LRK+++ Y S++++ N
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLK----VYEGEVKALLRKEKVRYRSLPQLGN  176

Query  174  YGSKVNFLNSSICDEALAKLMSIHRDIALIKKGKKYSIEIY---LLDNKLHAASnlaiqq  230
               ++ F + +  ++A A +     D+  I  +   +I +    L   KL    + +I+Q
Sbjct  177  -VIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIKQ  234

Query  231  ninilrnrinrlgiaEPLIQRQGVNSIVVELPGIQDTARAKEIIGATAMLEFRLVNEEQS  290
            N+  +RNR+N LG+AEPL+QRQG N IVVELPG+QDTA AK I+G TA LEFRL     +
Sbjct  235  NLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAG  291

Query  291  EEHSKITSNSEIKFTRNGTPIL-LYKQVLLTGDHITNATFSTDEYNQPQVNITLDHQGGK  349
             ++SK T++  + F   G P   + + +++TGD++T+A  S DE  +PQVNI LD +GG 
Sbjct  292  PDDSKGTTEM-FEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  350  IMSNFTKDNINKLMAILFIEYKNSSDNIK------DNNL----FLKQEEVINVATIQSHI  399
            +MS  T+ N+ + MA++FIE + ++   +      ++++    F  +  +I++ATIQS +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  400  SNMFRITGLNNRQEARNLSLLLRAGALMAPIKIVEECTIGPTLGMQNINQGLKACLWGLI  459
            ++ FRITGLN + E+ +L+LLLRAG+L AP+ + EE TIGP+LG +NI +G+ A LWG++
Sbjct  411  GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGML  470

Query  460  AAVLFMVIRYHKFGIIATIALIANMILIIGMMSLLPGVILTMPGIAGIVLTLAVAVDANV  519
               LF++  Y+ FG+IAT+AL  NM++++++MSLL G  LT+PGIAGIVLT+++AVDANV
Sbjct  471  FVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV  529

Query  520  LIYERIKEELSKERSIQQAIYQGYRRAFSSiidanittiitaiiLYEFGTGSikgfaitt  579
            LI+ RI+EE+++  ++Q+AI +G+ RA+++I+DAN+TT++ + IL+  GTG++KGFA+T 
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  580  iigiatSMFTAILGTRAIVNLLYGNKLIDKLSI  612
             +GI TSMFTAI+ TRA+VNL+YG + + KL I
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI  622

608) BC1002_0474 in NC_014117


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  325 bits (1219),  Expect = 5e-90, Method: Compositional matrix adjust.
 Identities = 260/628 (42%), Positives = 436/628 (70%), Gaps = 43/628 (6%)

Query  1    MNRYPLWKYAVMLVALVIGLVYTLPNLYGEAPAVQVSSGKATVRLDATTLASVEAALAGN  60
            +N+YPLWKY ++L  LV+G++Y+ PNLY + +A+Q+S++ +++++  + +     AL++ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPTAVTFDNSQNNANIRVRLTDTDTQLRVKDLLQKSLNSDPNDPQYIVALNLQSASPT  120
             I   A ++ ++ + + +R  L+  + QL  KD+++K+L  D     Y+VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WMTALRALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDVRTLLrdnnvrdggvnrv  180
            W+  + A PM LGLDL GGVHFLL+VDM  A++ +L    ++V++LLR ++VR  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  nQSVVVNLADQATADAALKLLGRGVSELQWTSQPSPGADGGVQLVG-TFTPAVQRAVQDA  239
             + + + ++D+A  + A  L+ +  ++++     +P+   G+ ++  ++TPA    +++ 
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE----ITPAELNGIPVLRMALTPAKLAEIREY  230

Query  240  ALKQNITTLHNRVNELGVAEPVIQQQGADRIVVELPGVQDTAKAKDIIGRTATLEARLAD  299
            ++KQN+TT++NRVNELGVAEP++Q+QGA+RIVVELPGVQDTA AK I+G+TA LE RL+ 
Sbjct  231  SIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG-  289

Query  300  PVNTHPNPNDPVPPGDEL-FTQGNQAPVLLRKQVIFTGDRIIDASAGFDEHQRPSVNIRL  358
                 + P+D+    + + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI L
Sbjct  290  -----AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  359  DSAGGRAVRAVSRDNIGKPMAMVLFE------------------------RGKGEVLTVA  394
            D+ GG  +   +R N+G++MA++++E                        +    ++++A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  395  TIQSELGDRFQITGQPTPQaaadlalllragslaaPMEIIEERTIGPSLGADNIKKGFHS  454
            TIQS LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG ++
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  455  VVWGFAAIAVFMIAYYMLFGVISMIGlsvnllllvavlsmlQatltlpgiaaialalgma  514
             +WG   +++F++A Y +FG+I+ ++L+ N+++L+A++S+L ATLTLPGIA+I L++GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  515  idaNVLINERVREELRHGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVRG  574
            +DANVLI  R+REE+ +G   Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  575  FAIVHCIGILTSMFSAVFFSRGLVNFWY  602
            FA+   +GI+TSMF+A+  +R++VN+ Y
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIY  612

609) secD in NC_010622


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  325 bits (1218),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 268/634 (43%), Positives = 432/634 (69%), Gaps = 43/634 (6%)

Query  1    MNRYPLWKYAVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVKLDSTTLSQVEAALASS  60
            +N+YPLWKY ++L  LV+G++Y+ PN++ + +A+Q+S++ +++++  + + +   AL+ +
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QIKPDDVTFDNSTQNANIRVRLKDTDTQLRVKDLLQKALNSDPTDPQFIVALNLQSASPH  120
             I     ++ ++ + + +R  L   + QL  KD+++KAL  D     ++VALNL  ++P+
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDKGIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A++ +L    ++ ++LLR   +R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GQSVVINFADQDVAETARKQLTAGVSELQWATQPNPSGGFQAV-GTFTPAVQKTVEDAAL  239
            G+ + + F+D+   E AR  +    ++++    P    G+  +  ++TPA    + + ++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE--ITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  240  KQNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPN  299
            KQN+TT++NRVNELGVAEP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+   
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG---  289

Query  300  GLHPNPSDPVPAGDEL-FTQGNAVPVLLRKSVIFTGDRIIDASAGFDEHQRPSVNIRLDS  358
               + P D+  + + + F +G   +  + +++I+TGD++ DA A+FDEH RP VNI LD+
Sbjct  290  ---AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDG  346

Query  359  AGGRAVRSVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATI  394
             GG  +   +R N+G++MA++++E                        K    ++++ATI
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  395  QSELGDRFQITGQPTPQAATDlalllragslaaPMDIIEERTIGPSLGADNIKKGFDSVV  454
            QS LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG D+ +
Sbjct  407  QSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASL  466

Query  455  YGfiaiaafmiayymLFGLISmialsvnlllliavlsmlQatltlpgiaaialalgmaid  514
             G + ++ F++A Y +FGLI+ +AL+ N+++L+A++S+L ATLTLPGIA+I L++GMA+D
Sbjct  467  WGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVD  526

Query  515  aNVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFA  574
            ANVLI  R+REE+ NG   Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV+GFA
Sbjct  527  ANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFA  586

Query  575  VVHCIGILTSMFSAVFFSRGLVNLWYGGK--KKL  606
            V   +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  587  VTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

610) secD in NC_007651


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  324 bits (1216),  Expect = 8e-90, Method: Compositional matrix adjust.
 Identities = 265/633 (42%), Positives = 431/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     Y+VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEEAALK  239
            ++ +   F+D+   EQAR L+  + ++++  T +   G  V+  ++TPA    + E ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQVPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G + +  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAIAVFMIAYYMLFGvvsvlglsvnllllvavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

611) secD in NC_021287


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 267/633 (43%), Positives = 437/633 (70%), Gaps = 43/633 (6%)

Query  1    MNRYPLWKYVVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVKLDSTTLANVESALAAN  60
            +N+YPLWKYV++L  LV+G++Y+ PN++ + +A+Q+S++ +++++  + +     AL+  
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NVKADEVTFDNSQLNANIRVRLADTDTQLRVKDLLSKSLNTDPSDPQYIVALNLQSASPR  120
             +     ++ ++  ++ + +RL+  + QL  KD++ K+L  D     Y+VALNL  ++P 
Sbjct  62   GIPVKASSLAENG-KGGL-LRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDAADARTYLRDRNIRDGGVNRV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A++ +L    ++ ++ LR  ++R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GQSVVVSFSDQAAADNARTLLSTGVAELQWSTRQGSDGYQVV-GTFSAATQRSVEDGALK  239
            G+ + ++F+D+A  ++AR+L+    ++++  T    +G  V+  ++++A    + + ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN  299
            QN+TT++NRVNELGVAEP++Q+QG++RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGA---  290

Query  300  TYIGPNEAVPPGDE-AFKQNDR-TVLLRKQVIFTGDRIIDASAGFDDHQRPSVNIRLDSA  357
               GP+++    +   F++ +R +  + + +I+TGD++ DA A+FD+H RP VNI LD+ 
Sbjct  291  ---GPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  358  GGRAVSAVSRDNIGKPMAMVLFE------------------------KGKGEVLTVATIQ  393
            GG  +S  +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  394  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTVGPSLGADNIKKGFDSVQY  453
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERT+GPSLGADNI KG D+   
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  454  GfaaiaifmiaYYLLFGvfsmlslsvnllllvailsllQatltlpgiaaialalgmaida  513
            G   +++F++A Y +FG+++ ++L+ N+++L+A++SLL ATLTLPGIA+I L++GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  514  NVLINERIREELRNGAPPQTAIQEGFKHAWATILDSNVTTLIAGLALLAFGSGPVRGFAV  573
            NVLI  RIREE+ NG   Q AI EGF +A ++ILD+N+TTL+ G  L+A G+GPV+GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  574  VHCIGILTSMFSAVFFSRGLVNLWYGGK--KKL  604
               +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

612) secD in NC_021173


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  319 bits (1197),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 265/633 (42%), Positives = 433/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN  60
            +N+YP+WKYV+++  L +GF+Y+ PN++ + +A+Q+S++ +++++    + +   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR  120
             ++    ++ +++  + +R  L   + QL  KD+++K+L  D     YVVALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLTALRALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV  180
            WL  + A PM LGLDL GGVHFLL+VDM  A+  +L    ++ ++ LR   +R  +++++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  DQTVVANFADQDTAEQARTLLASSVSELQWATQPGGGGYQVV-GTFTPAVQKAVEDAALK  239
            ++ +   F+D+   EQAR+L+  + ++++  T +   G  V+  ++TPA    + + ++K
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIK  233

Query  240  QNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLN  299
            QNLTT++NRVNELGV+EP++Q+QG +RIVVELPGVQDTA AK I+G+TA LE RL+    
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLG----  289

Query  300  THPNPNDPVPPGEEL-FTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSA  358
              + P+D+    E + F +G +++  + + +I+TGD++ DA A+FDEH RP VNI LD+ 
Sbjct  290  --AGPDDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRAVRAVSRENIGKPMAMVLFE------------------------KGKGEVLTVATIQ  394
            GG  +   +R N+G++MA++++E                        K    ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGDRFQITGQPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIRMGFHSVIW  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI  G ++ +W
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFVAITVFMIAYYMlfgvvsvlglsvnlllliavlslMQatltlpgiaaialalgmaiDS  514
            G + +++F++A Y +FG+++ ++L+ N+++L+A++SL+ ATLTLPGIA+I L++GMA+D+
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAI  574
            NVLI  RIREE+  G + Q AI EG+ +A ++ILD+N+TTL+ G  L+A G+GPV++FA+
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSMFSAVFFSRGLVNLWYGGR--KKL  605
               LGI+TSMF+A+  +R++VNL YGGR  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

613) secD in NC_014145


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  318 bits (1191),  Expect = 7e-88, Method: Compositional matrix adjust.
 Identities = 254/629 (41%), Positives = 423/629 (68%), Gaps = 46/629 (7%)

Query  1    MNRYPWWKYLIMvvvlvvgvvYALPNLYGESPSVQISSTNGG-KVDNALLLKGEQILDAA  59
            +N+YP WKY++++ VLVVG +Y+ PNLY + +++QIS+++ + +V +A + ++ + L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   NLKPDSADF--NGATVNYRFSNTSVQLKARDVLAKALNPNADDPRYVVAVNLLSRSPAWL  117
             +   ++ +  NG     R+S+   QL A+DV+ KAL  +     YVVA+NL   +P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  118  TALNANPMYLGLDLRGGVHFLLQVDMQAAVHKKLDSISGELRRDLRDKDARYTKLERVGD  177
              + A PM LGLDL GGVHFLL+VDM+ A++ +L    GE++  LR    RY  L ++G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  178  TLQGVFVDASALNTAKELITRQHPDLQLAPQAPAGSYSLSASLTPAAVSQEEDYAIKQNI  237
             +Q  F D +  + A+ L+ +   D++++P    G   L  +LTPA +++  +Y+IKQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  238  QTLHNRINELGVAEPIIQQQGRDRVVVELPGIQDVARAKDILGRTASLEVRMVDDSaaaq  297
             T++NR+NELGVAEP++Q+QG +R+VVELPG+QD A AK ILG+TA+LE R+  ++  ++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  298  aalagqgplpaGDQIFPDRDGGK--LVVKRDVLLTGDNLTDAQPGFDQQTNEPAVFLTLD  355
            +            ++F  R+GG+    V R++++TGD++TDA+++FD++   P V + LD
Sbjct  297  G----------TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  356  SKGSRIFQQVTRENVGKRTAMILFD------------------------RGRGEIITAPV  391
            + G+ +  + TR NVG+  A+I+++                        +    II+ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  392  IRSEIAGGRVQISGHMTVQEANDTalllragalaaPMNIIEERTVGPSLGQQNISQGFHS  451
            I+S + G++ +I+G     E+++ ALLLRAG+LAAPM + EERT+GPSLG +NI++G ++
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  452  VTWGFVAIVIFMSIYYMFFGVVSSIGlavnllllvavlsmlqaTLTLPgiaamalalgma  511
              WG + + +F+   Y FFG++++++LA N+++L+A++S+L ATLTLPGIA++ L++GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  512  iDSNVLINERIREELRNGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRG  571
            +D+NVLI  RIREE+ NG + Q AI +G++RA ++I+D+N+TTL+ G  L+  G+G+++G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  572  FAVVHVLGILTSMFSAVFFSRGIINLWYG  600
            FAV   LGI+TSMF+A+  +R+++NL YG
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYG  613

614) Tint_0082 in NC_014153


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  317 bits (1189),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 254/629 (41%), Positives = 423/629 (68%), Gaps = 46/629 (7%)

Query  1    MNRYPWWKYLIMvvvlvvgvvYALPNLYGESPSVQISSTNGG-KVDNALLLKGEQILDAA  59
            +N+YP WKY++++ VLVVG +Y+ PNLY + +++QIS+++ + +V +A + ++ + L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  60   NLKPDSADF--NGATVNYRFSNTSVQLKARDVLAKALNPNADDPRYVVAVNLLSRSPAWL  117
             +   ++ +  NG     R+S+   QL A+DV+ KAL  +     YVVA+NL   +P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  118  TALNANPMYLGLDLRGGVHFLLQVDMQAAVHKKLDSISGELRRDLRDKDARYTKLERVGD  177
              + A PM LGLDL GGVHFLL+VDM+ A++ +L    GE++  LR    RY  L ++G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  178  TLQGVFVDASALNTAKELITRQHPDLQLAPQAPAGPYSLSASLTPAAVSQEEDYAIKQNI  237
             +Q  F D +  + A+ L+ +   D++++P    G   L  +LTPA +++  +Y+IKQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  238  QTLHNRINELGVAEPIIQQQGRDRVVVELPGIQDVARAKDILGRTASLEVRMVDDSaaaq  297
             T++NR+NELGVAEP++Q+QG +R+VVELPG+QD A AK ILG+TA+LE R+  ++  ++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  298  aalagqgplpaGDQIFPDRDGGK--LVVKRDVLLTGDNLTDAQPGFDQQTNEPAVFLTLD  355
            +            ++F  R+GG+    V R++++TGD++TDA+++FD++   P V + LD
Sbjct  297  G----------TTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  356  SKGSRIFQQVTRENVGKRTAMILFD------------------------RGRGEIITAPV  391
            + G+ +  + TR NVG+  A+I+++                        +    II+ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  392  IRSEIAGGRVQISGHMTVQEANDTalllragalaaPMNIIEERTVGPSLGQQNISQGFHS  451
            I+S + G++ +I+G     E+++ ALLLRAG+LAAPM + EERT+GPSLG +NI++G ++
Sbjct  406  IQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  452  VTWGFVAIVIFMSIYYMFFGVVSSIGlavnllllvavlsmlqaTLTLPgiaamalalgma  511
              WG + + +F+   Y FFG++++++LA N+++L+A++S+L ATLTLPGIA++ L++GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  512  iDSNVLINERIREELRNGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRG  571
            +D+NVLI  RIREE+ NG + Q AI +G++RA ++I+D+N+TTL+ G  L+  G+G+++G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  572  FAVVHVLGILTSMFSAVFFSRGIINLWYG  600
            FAV   LGI+TSMF+A+  +R+++NL YG
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYG  613

615) BUPH_04307 in NC_018695


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  315 bits (1182),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 255/622 (41%), Positives = 421/622 (68%), Gaps = 39/622 (6%)

Query  1    MMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAANQIKPEDVTFD  60
            ++L  LV+G++Y+ PNL+ + +A+Q+S++ +++++  + +     AL+   I     ++ 
Sbjct  12   LILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLA  71

Query  61   NSSTNANIRVRLLDTDTQLRVKDLLQKSLNSDPSDPQFVVALNLQSASPRWLTALHALPM  120
            +++  + +R  L   + QL  KD+++K+L  D     +VVALNL  ++P WL  + A PM
Sbjct  72   ENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWLRNVGATPM  124

Query  121  YLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDNNIRDGGVNRVNQTVVINFad  180
             LGLDL GGVHFLL+VDM  A++ +L    ++ ++LLR +++R  ++ ++ + + + F+D
Sbjct  125  KLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGD  184

Query  181  qatadaaaKQLSRSIGELQWASQNGPDGSVQLVGTFTPTVQKAVQDAALKQNITTLHNRV  240
            +A  + A   + +++ +++  +    +G   L  ++TP+    +++ ++KQN+TT++NRV
Sbjct  185  DAEREQARALVRKTFTDFE-ITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRV  243

Query  241  NELGVAEPVIQQQGADRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVP  300
            NELGVAEP++Q+QGA+RIVVELPGVQDTA AK I+G+TA LE RL+   +     ++   
Sbjct  244  NELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMFE  303

Query  301  PGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRSVSRD  360
                 F +G + +  + + +I+TGD++ DA A+FDEH RP VNI LD+ GG  +   +R 
Sbjct  304  -----FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRS  358

Query  361  NIGKPMAMVLFE------------------------KGKGEVLTVATIQSELGDRFQITG  396
            N+G++MA++++E                        K    ++++ATIQS LG +F+ITG
Sbjct  359  NVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITG  418

Query  397  QPTPQaaadlalllragslaaPMDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFMIA  456
                  +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG ++ +WG   +++F++A
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  457  YYMLFGVISmiglsvnlllliavlsmlQatltlpgiaaialalgmaidaNVLINERVREE  516
             Y +FG+I+ ++L+ N+++L+A++S+L ATLTLPGIA+I L++GMA+DANVLI  R+REE
Sbjct  479  IYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREE  538

Query  517  LRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVRGFAIVHCIGILTSMF  576
            + NG   Q AI +G+ +A ++ILD+N+TTL+ G  L+A G+GPV+GFA+   +GI+TSMF
Sbjct  539  IANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMF  598

Query  577  SAVFFSRGIVNLWYGGK--KKL  596
            +A+  +R++VNL YGG+  KKL
Sbjct  599  TAIMVTRAMVNLIYGGRDFKKL  620

616) secD in NC_013194


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  314 bits (1178),  Expect = 7e-87, Method: Compositional matrix adjust.
 Identities = 270/628 (43%), Positives = 433/628 (69%), Gaps = 40/628 (6%)

Query  1    MNRYPLWKYvlvaialvlglvYTLPNFFGESPAVQVSSAKATLKVDEKTRERVASTLRSA  60
            +N+YPLWKYVL+   LV+G++Y+ PN++ + +A+Q+S+A ++L+V +   +R A +L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   SIENSGIFL--DSNGVKVRLLNADSQLQAKDLLEKQFNPDPTDPQYVVALNLLSSSPQWL  118
            +I   +  L  +++G  +RL + + QL AKD++ K +  D     YVVALNL  ++P+WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TNLHALPMYLGLDLRGGVHFLLQVDMKGALTKRLDSISGDLRSLLRDKNVRHAGITREGE  178
             N+ A PM LGLDL GGVHFLL+VDM  A+  RL    G++++LLR  +VR  ++ + G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  RLTIRFRDGDTRAKARIVLEDNQSDLLLADQGEGDDLKLVATLKPEAIKRIQEFAVKQNM  238
             + + F D+  R +AR ++    +D+ ++     +   L  +L P  +  I+E+++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  TTLSNRINELGVAEPVIAQQGADRIVVQLPGVQDTAKAKDILGRTATLEIRMVEETAGAL  298
            TT+ NR+NELGVAEP++ +QGA+RIVV+LPGVQDTA AK ILG+TA LE+R+    +++ 
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGP  292

Query  299  EAAQAGQVPFGTELYVERGGLPLLVRKQVVLTGDRLTDAQPGFDNQTHEPAVHLTLDSAG  358
            + +++    F    + E G  +  V + +++TGD++TDA+++FD++ + P V++ LD+ G
Sbjct  293  DDSKGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHG  348

Query  359  ARIFKDVTRDNVGKRMAIVLIE------------------------KGKGEVVTAPVIRA  394
            + +    TR NVG+ MA+++IE                        K    +++ + I++
Sbjct  349  GELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQS  408

Query  395  EIGGGRVQISGRMSTMEANDTALLLRAGSLAAPMEIIEERAIGPSLGAENIKKGFHSTMW  454
             + G++ +I+G  +  E+++ ALLLRAG+LAAPM + EER+IGPSLGA+NI KG ++++W
Sbjct  409  PL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFAAIAVFMIAYYVLFGLVSVIalaanllflvallsllqatltlpgiaaialalgmaida  514
            G   +++F++A Y +FGL++ +ALA N++ L+AL+SLL ATLTLPGIA+I L++GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVLINERIREELRNGSTPQLAIHTGYERAFGTILDSNittliagialliFGSGPVRGFAV  574
            NVLI  RIREE+ NG T Q AI  G++RA+ +ILD+N+TTL+ G  L+  G+GPV+GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCLGILTSLFSAVVVSRALINLIYGNR  602
               LGI+TS+F+A++V+RA++NLIYG R
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGR  615

617) secD in NC_011662


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  313 bits (1173),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 260/610 (43%), Positives = 416/610 (69%), Gaps = 44/610 (7%)

Query  22   YTLPNFYGEVPAVQVSSakatlkldtaattdRIAGALKAAGI--ENTGIFSDATSVRARF  79
            Y+ PN+Y + +A+Q+S+A ++L++  A    R A AL  AGI    +++  ++ +   R+
Sbjct  23   YSAPNLYPDDSAIQISGASTALQVTQADVD-RAAKALTDAGIPVKASSLAENGKGGLLRL  81

Query  80   KDTETQLRAKDVIEQTFNPDAADPSYVVALNLLSASPSWLTSIQALPMYLGLDLRGGVHF  139
               E QL AKDV+ +++  D     YVVALNL  ++P+WL ++ A PM LGLDL GGVHF
Sbjct  82   SKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHF  136

Query  140  LLEVDMPGALVKRLDSTTGDLRTLMRDKSVRHAGITREGNTVVIRFRDAAQREAGRRAIF  199
            LLEVDM  A+  RL    G++++L+R   VR  ++ + GN + + F D A+RE +R  + 
Sbjct  137  LLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGDDAEREQARALVR  196

Query  200  DSTTDLQLVERD-DAADDLKLVATLTPQAQQTMRDFAIKQNITTLHNRINELGVAEPVIQ  258
             + TD+++   + ++   L++  +LTP     +R+++IKQN+TT++NR+NELGVAEP++Q
Sbjct  197  KTFTDFEITPAELNGIPVLRM--ALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQ  254

Query  259  QQGAERIVVQLPGVQDVAKAKDILGRTATLEVRMVDDTPGAIEQALAGSVPFGTELYNER  318
            +QGA+RIVV+LPGVQD A AK ILG+TA LE R+     ++ +++ + +  F    + E 
Sbjct  255  RQGANRIVVELPGVQDTAEAKRILGKTANLEFRL----GAGPDDSKGTTEMFE---FREG  307

Query  319  GGSPLLVKKQVVLTGDRLTDAQPGFDGQTNEPAVHLTLDAAGARIFRDVTRESVGKRMAI  378
            G ++  V + +++TGD++TDA+++FD +   P V++ LD+ G+ +    TR +VG+ MA+
Sbjct  308  GRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGELMSRATRSNVGRSMAV  366

Query  379  LLFE------------------------KGKGEVVTAPVIRSEIGGGRVQISGRMSTVEA  414
            +++E                        K    +++ + I+S +G+ + +I+G  +  E+
Sbjct  367  IFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGS-QFRITGLNGQGES  425

Query  415  NDVALLLRAGSLAAPMEIIEERTVGPSLGAENIQKGFNSTLWGFLAIVVFMCGYYMLVGl  474
            +++ALLLRAG+LAAPM + EERT+GPSLGA+NI KG +++LWG L + +F+ + Y + GL
Sbjct  426  SELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRFFGL  485

Query  475  vssialaanllllvallsllqatltlPGIAAMALTLGMAIDSNVLINERIREELRNGASP  534
            ++++ALA N+++L+AL+SLL ATLTLPGIA++ LT+GMA+D+NVLI  RIREE+ NG + 
Sbjct  486  IATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTV  545

Query  535  QAAIAAGYDRAWDTILDSNITTLIAGIALLVFGSGPVRGFAVVHCLGILTSMFSAILVSR  594
            Q AI+ G+DRA  +ILD+N+TTL+ G  L+  G+GPV+GFAV   LGI+TSMF+AI+V+R
Sbjct  546  QRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTR  605

Query  595  MLINFIYGRR  604
             ++N+IYG R
Sbjct  606  AMVNLIYGGR  615

618) secD in NC_005085


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  312 bits (1171),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 256/631 (41%), Positives = 429/631 (68%), Gaps = 43/631 (6%)

Query  1    MNRYPLWKYlvivvaliisaiYTLPNFYGETPAVQVSSSRQSIPVDSAVMARVEDALKSQ  60
            +N+YPLWKY++I+  L+++ IY+ PN+Y + +A+Q+S++  ++ V  A + R   AL   
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NLSPDGVFLDANSLK--VRFKDTDTQLKARDAIQHALGDNYIIalnllpaspswlaslHA  118
             ++  +  L  N+    +R+   + QL A+D ++ ALGD+Y++ALNL  ++P+WL ++ A
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGA  121

Query  119  NPMFLGLDLRGGVHFLLEVDMKAATDKAMERYAGDLRRELKNKQVRYGSIKRNGNTLEVQ  178
             PM LGLDL GGVHFLLEVDM  A D  +  Y G+++  L++ +VRY S+ + GN +++ 
Sbjct  122  TPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLG  181

Query  179  LRDEDTLKSAQDVVYRMLPSLAVRSDDASNK--LLLTLKPEEITKIQNDAVKQNITTLHN  236
            + D+     A+ +V + +  + + + + +    L ++L P  ++ I++ ++KQN+TT++N
Sbjct  182  FGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRN  241

Query  237  RVNELGTTEPIIQQNGPNRIVVQLPGIQDTARAKDIIGRTATLEVHMVED-DQGKVAEAL  295
            RVNELG +EP++Q++G+NRIVV+LPG+QDTA AK I+G+TA LE ++  + D++K +  +
Sbjct  242  RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEM  301

Query  296  AGNVPAGYELLDEATSRGQSKILLKSDVELTGDNINDAQPSFDQFGAPAVSINLDSTGAA  355
                   +E+ +     G++   +  ++ +TGD++ DA++SFD+ G P V+INLD+ G+ 
Sbjct  302  -------FEFREG----GRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGE  350

Query  356  IFRQLTAENVGKRMAMVLVE------------------------KGRKEVVTAPVIRTEI  391
            +  + T  NVG+ MA++++E                        K  K +++ + I++ +
Sbjct  351  LMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPL  410

Query  392  GGGRVEISGSMNSAEANDTALLLRAGSLAAPMNIIEERTIGPSLGKENIEKGFHATLWGF  451
             G++  I+G    +E+++ ALLLRAG+LAAPM + EERTIGPSLG +NI KG +A+LWG 
Sbjct  411  -GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGM  469

Query  452  AAIAVFMVIYYGLFGVFSSLSLAINVFLLIALLSMLQatltlpgiaaialalgmaidaNV  511
              +++F++  Y +FG++++++LA+N+ +L+AL+S+L ATLTLPGIA+I L++GMA+DANV
Sbjct  470  LFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANV  529

Query  512  LINERIREELRNGMPPHSAIHAGYDHAWHTILDSNVTTLIAGLALMIFGSGPVRGFAIVH  571
            LI  RIREE+ NGM  + AI  G+D+A  +ILD+N+TTL+ G  L   G+GPV+GFA+  
Sbjct  530  LIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTM  589

Query  572  CLGILTSMFSAVLVSRGLVHLWYGRR--RKL  600
             LGI+TSMF+A++V+R++V+L YG R  +KL
Sbjct  590  SLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

619) Fbal_2129 in NC_014541


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  310 bits (1161),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 256/628 (41%), Positives = 415/628 (67%), Gaps = 50/628 (7%)

Query  10   VINRYPAWKYvvlvvtlvvmtlSALPSWYGEDAAIDIHWSHAK------DAQSTERYLES  63
            ++N+YP WKYV+++  LVV  + + P+ Y +D+AI+I  + +       D + + + L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  64   QGISVKA--INQQGEQTQIVLADPNSQFTAQAALTKWIGPDDSLALSQQPAAPSWLLNMG  121
             GI+VKA  + ++G    + L+  + Q+ A+  + K +G D  +AL+   ++P+WL N+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  122  FGPMSLGLDLRGGVQFLLDVDMAPVMNAQ----QQAVMQSLRSTVRGVRAQAQHDHSVTT  177
              PM LGLDL GGV+FLL+VDM   ++A+    +  V   LR      R+ +Q ++ +  
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  178  SALTDAQRQQVIEVVKKDYPGWQ-WRNHVDG---LALSMKPEEQEQLTRLTVIQNLQILR  233
            +   DA+R+Q   +V+K + + +    +++G   L +++ P    ++   ++ QNL  +R
Sbjct  181  GFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR  240

Query  234  SRIEELGITEAVVQRQGTNRIRIELPGVQDPVAAKKVIGATTSLAFYEVNQGEPVQGKT-  292
            +R++ELG++E++VQRQG+NRI +ELPGVQD   AK+++G T++L F      +  +G T 
Sbjct  241  NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE  300

Query  293  -LPFNQGG--TVSVKRLPVLTGEHIIDARAGLDEMSQPQVNIVLDAAGGRIMSDFTRNKI  349
             + F +GG  + +V R  ++TG+++ DA+A++DE ++PQVNI LD+ GG +MS  TR+++
Sbjct  301  MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV  360

Query  350  GYPMATAFSEYRQDAA-GRSVV--------------DTEVISVATIQSQLGSRFVITGSG  394
            G +MA  F E R  ++  R +V              D  +IS+ATIQS LGS+F ITG  
Sbjct  361  GRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN  420

Query  395  SMaeaqqlalllragsltaPVVIVEERTIGPTLGAENIENGFQALAVGMGATL---LFMA  451
            + +E+ +LALLLRAG+L+AP+ + EERTIGP+LGA+NI +G       ++A+L   LF++
Sbjct  421  GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG-------VDASLWGMLFVS  473

Query  452  LW----YRRLGWvanvalvanlvTLFGLMALLPGAVLTLPGIAGLVLTVGMAVDTNVLIF  507
            L     YR +G +A VAL  N+V L++LM+LL GA LTLPGIAG+VLT+GMAVD+NVLIF
Sbjct  474  LFIMAIYRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF  532

Query  508  ERIRDMIRQGHSLARAIHLGFDRALTTIWDANLTTMITALVLYSIGNGPIQGFALTLGLG  567
             RIR+ I +G ++ RAI  GFDRA T+I DANLTT++ + +L+++G GP++GFA+T++LG
Sbjct  533  SRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLG  592

Query  568  LMTSLFTGVFLSRALINLVWGQDTRRKV  595
            + TS+FT++ ++RA++NL+ G    +K+
Sbjct  593  IFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

620) secD in NC_008702


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 270/631 (43%), Positives = 437/631 (70%), Gaps = 44/631 (6%)

Query  1    MNRYPLWKNiliglallwgliYTLPNFYGEVPAVQVSSAKATLKLEPASVTDRVAAILQG  60
            +N+YPLWK +LI   L+ G+IY+ PN+Y + +A+Q+S+A ++L++  A V DR A  L +
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADV-DRAAKALTD  60

Query  61   AGI--EHDGIFADANSVRARFASTELQLRAKDAIERAFNTDPQDPSYVVALNLLSASPSW  118
            AGI     ++  ++++   R++  E QL AKD + +A+  D     YVVALNL  ++P+W
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNW  115

Query  119  LTSIHALPMYLGLDLRGGVHFLLQLDMPGALLKRLDALSGDLRTLMRDKNVRHAGITREG  178
            L ++ A PM LGLDL GGVHFLL++DM  A+  RL    G++++L+R  +VR  ++ + G
Sbjct  116  LRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLG  175

Query  179  TTVVirfreaaqreaarsaiqGSTADLQLVDRD-DGSEDLKLIATLTPQAQQTMREYAIK  237
              + + F + A+RE AR+ ++ + +D+++   + +G   L++  +LTP     +REY+IK
Sbjct  176  NVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRM--ALTPAKLAEIREYSIK  233

Query  238  QNISTLHNRINELGVAEPVIQQQGAERIVVQLPGVQDVAKAKDILGRTATLEVRMVDDTP  297
            QN++T++NR+NELGVAEP++Q+QGA+RIVV+LPGVQD A AK ILG+TA LE R+  +  
Sbjct  234  QNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP-  292

Query  298  GALEQALTGNVPFGTELYRERGRGPLLVKKQVVLTGERLTDAQPGFDGQTNEAAVHLTLD  357
               +++      F    +RE GR +  V + +++TG+++TDA+++FD +   + V++ LD
Sbjct  293  ---DDSKGTTEMFE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLD  345

Query  358  AAGARIFRDLTRENVGKRMAILLIE------------------------KGKGEVVTAPV  393
            + G+ +    TR NVG+ MA+++IE                        K    +++ + 
Sbjct  346  GHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLAT  405

Query  394  IRTEIGGGRVQISGSMNTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIAKGFHS  453
            I++ +G+ + +I+G     E++++ALLLRAG+LAAPM + EERT+GPSLGA+NI+KG ++
Sbjct  406  IQSPLGS-QFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  454  TLWGFVAIAVFMCVYYAVFGlvstlalaanllllvallsllqatltlPgiaamalalgma  513
            +LWG + +++F+   Y  FGL++T+ALA N+++L+AL+SLL ATLTLPGIA++ L++GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  514  iDANVLINERIREELRNGVSPQAAIAAGYDRAFSTILDSSVTSLIAGIALLVFGSGPVRG  573
            +DANVLI  RIREE+ NG++ Q AI+ G+DRA+++ILD+++T+L+ G  L+  G+GPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  574  FAVVHCLGLLTSMFSAILVSRMLINLIYGRR  604
            FAV   LG++TSMF+AI+V+R ++NLIYG R
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYGGR  615

621) secD in NC_006371


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  305 bits (1142),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 255/623 (41%), Positives = 420/623 (68%), Gaps = 35/623 (5%)

Query  16   IFNHYSAWKYIvlvvtvlvmllSAIPTWYGEDAAVQISAKKAP----APSVLAIQRQLES  71
            ++N Y+ WKY++++  ++V ++ + P  Y +D+A+QIS+  ++     + V    + L  
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  72   SGITVK--RIDQQADKTVVVLENDNQQTQAKKVLSNVVKDKStltlalepaaplwlQNMG  129
            +GI VK   + +++   ++ L ++++Q  AK V+ + + D   ++L L  ++P WL+N+G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  130  FEPIKLGLDLRGGVQFLLDVDIDQVYKAQGASLADELRQLFRKEGIRGARVEQ-SDVDHL  188
              P+KLGLDL GGV+FLL+VD+D+   A+     +E++ L+RKE +R   + Q ++V +L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  189  TVKVNNSEANSAVRKFVKTQYPQWQATNGDGNSV---RLAMKDAEKTELRNLTVQQNLQT  245
                 +       R +V+  + + + T ++ N++   R+A+  A  +E+R+ +++QNL T
Sbjct  181  GF--GDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTT  238

Query  246  MRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFY----AVKEQGT  301
            +R+R++ELG++E+LVQRQG NRI +ELPGVQD A AK ++G TA+L F     +   +GT
Sbjct  239  VRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT  298

Query  302  GSTMELKNKQGQPVRVGRNPILGGDHIVDARASFGEMGMAEVNITLDSSGGKIMSDFSRD  361
                E+++    +  V R  I+ GD++ DA+ASF+E G ++VNI LD+ GG +MS  +R 
Sbjct  299  TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRS  358

Query  362  NVGKPMATSYSE------YGR---DSEGKTT------QTNEIISVATIQSQLGMRFRITG  406
            NVG++MA  + E      Y R   ++  K        + + IIS+ATIQS LG +FRITG
Sbjct  359  NVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITG  418

Query  407  TGSMDEAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIENgfaalg-lglgvtllfMA  465
              + +E+ +LALLLRAG+L+AP+ + EERTIGP+LGA+NI +G  A     L V+L++MA
Sbjct  419  LNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMA  478

Query  466  VWYRRLGWVANVALIANMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIK  525
            + YR +G +A VAL  NM+ML++L++L+ GA LTLPGIAG+VLT+GMAVD+NVLIF RI+
Sbjct  479  I-YRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR  536

Query  526  DKLKEGRSMAQAIDRGFSSAIGTIFDANFTTMITAVVLYAIGNGPIQGFAltlglglltS  585
            + + +G ++ +AI  GF  A  +I+DAN+TT++ + +L+A+G GP++GFA+T++LG++TS
Sbjct  537  EEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS  596

Query  586  MFTGIFASRAIINLVW-GRDSRR  607
            MFT+I  +RA++NL+  GRD ++
Sbjct  597  MFTAIMVTRAMVNLIYGGRDFKK  619

622) RBRH_01676 in NC_014722


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  303 bits (1135),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 270/633 (43%), Positives = 433/633 (69%), Gaps = 42/633 (6%)

Query  1    MNRYPLWKYVVMLVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSSVLNTVESTLAAN  60
            +N+YPLWKYV++L  L +G++Y+ PN++ + +A+Q+S++ +++++  + ++    +L+  
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GVQADDVTFDNASQNANIRVRLKDTDTQLRVKDLLQKALNADPADPTYIVALNLQSASPR  120
            G+     ++ + ++ + +R  L   + QL  KD+++KAL  D     Y+VALNL  ++P 
Sbjct  62   GIPVKASSLAENGKGGLLR--LSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPN  114

Query  121  WLASLHALPMYLGLDLRGGVHFLLQVdlagalnkkldadaadartllrdkSIRAGGVNRV  180
            WL ++ A PM LGLDL GGVHFLL+VD+  A++ +L    ++ ++LLR   +R  ++ ++
Sbjct  115  WLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQL  174

Query  181  GQTVVVNFVDQDVANRARQLLSDNVTELTWQVQPAA-GGYQVVG-AFTPAAQKTVQDSAL  238
            G+ + + F D+   ++AR L+    T+   ++ PA   G  V+  A+TPA    +++ ++
Sbjct  175  GNVIQLGFGDDAEREQARALVRKTFTD--FEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  239  KQNITTLHNRVNELGVAEPIVQQQGADRIVVELPGVQDTAKAKDIIGRTATLEARMADYQ  298
            KQN+TT++NRVNELGVAEP+VQ+QGA+RIVVELPGVQDTA AK I+G+TA LE R++   
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGP  292

Query  299  NPVRNINDPVPVGDDLFTQGNGAPVYLKKQVIFTGDRITDASAGFDEHQRPAVKIRLDAR  358
            +  +   +        F +G  ++  + + +I+TGD++TDA A+FDEH RP V+I LD++
Sbjct  293  DDSKGTTEMFE-----FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGH  347

Query  359  GGRVLRDVSRDNIGKPMAIVLFE------------------------KNKGELLTVATIQ  394
            GG ++   +R N+G++MA++++E                        K+   ++++ATIQ
Sbjct  348  GGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQ  407

Query  395  SELGENFQITGQPTPQAATDlalllragslaaPMEIIEERTIGPSLGADNIRKGFDSVQY  454
            S LG +F+ITG      +++LALLLRAG+LAAPM + EERTIGPSLGADNI KG D+   
Sbjct  408  SPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLW  467

Query  455  GFAAIAVFMIAYYMLFGlisvialsvnllllvavlsMMQatltlpgiaaialalgmaida  514
            G   +++F++A Y +FGLI+ +AL+ N+++L+A++S++ ATLTLPGIA+I L++GMA+DA
Sbjct  468  GMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDA  527

Query  515  NVlinerireelrrGAPAQLAIQNGFSHAWATILDSNVTTLIAGLALLAFGSGPVRGFAV  574
            NVLI  RIREE+  G   Q AI +GF +A ++ILD+N+TTL+ G  L+A G+GPV+GFAV
Sbjct  528  NVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAV  587

Query  575  VHCIGILTSMFSAVFFARGLVNLWYGGK--KKL  605
               +GI+TSMF+A+  +R++VNL YGG+  KKL
Sbjct  588  TMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKL  620

623) secD in NC_006840


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  302 bits (1132),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 258/620 (42%), Positives = 426/620 (69%), Gaps = 39/620 (6%)

Query  10   LNHYSKWKYivlittlvilllSAIPTWYGEDAAVQITNKDGHI----PSIVSLQNTLTEQ  65
            LN Y+ WKY+++++ LV+ ++ + P  Y +D+A+QI+     +    + +    ++LT+ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  66   GINVK--RIEQKGDKTIVILKDEAQQVAAKDVLGSVIDESQKGTTlalslapaapawlQN  123
            GI VK   + ++G   ++ L  + +Q++AKDV+   +++      +AL+LA ++P WL+N
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD---YVVALNLARTTPNWLRN  118

Query  124  MGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELADSLKQELREERIRSVRLQKVDSDT  183
            +G  P+KLGLDL GGV+FLL+VD+++  +A+ +   + +K  LR E++R   L ++++  
Sbjct  119  VGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN--  176

Query  184  LVVHLP--SEEASHAARQFIHKNYPTWQITNDD--GFD-LKLTLKEDEKIAVRNLTVQQN  238
             V++L    +   + AR +++K +   +IT  +  G+  L+++L       +R+ +++QN
Sbjct  177  -VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  239  LQTMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFY--AVKEQG  296
            L T+R+R++ELG++E+LVQRQG NRI +ELPGVQD A AK ++G TA+L F   A  +++
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  297  TGSTMVIP-DQNGQPVR-VGRKPVLTGDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEF  354
             G+T ++   + G+P   V R  ++TGD++ DA+AS++E G ++VNI LD+ GG +MS  
Sbjct  296  KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRA  355

Query  355  SRHNVGKPMATSYNE------YSRDSAGNTE---------QSNQIISVATIQSQLGSRFR  399
            +R NVG++MA  + E      Y+R+     E         + ++IIS+ATIQS LGS+FR
Sbjct  356  TRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFR  415

Query  400  ITGSGslqesqelalllraGSLTAPVTIVEERTIGPTLGAENIQNgfaalg-lglgltll  458
            ITG  +  ES ELALLLRAG+L+AP+ + EERTIGP+LGA+NI +G  A     L ++L+
Sbjct  416  ITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLF  475

Query  459  fMAVWYRRLGWVANIALIGNMVMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFE  518
            +MA+ YR +G +A +AL  NMVML++L++L+ GA LTLPGIAG+VLT+GMAVD+NVLIF 
Sbjct  476  IMAI-YRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFS  533

Query  519  RIKDKQKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLYTIGNGPIQGFAltlglgl  578
            RI++   +G T+ +AI  GF  A+ +I+DAN+TT++ + +L+++G GP++GFA+T++LG+
Sbjct  534  RIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGI  593

Query  579  ltSMFTGIFASRAIINLVWG  598
            +TSMFT+I  +RA++NL+ G
Sbjct  594  FTSMFTAIMVTRAMVNLIYG  613

624) secD in NC_008781


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  300 bits (1123),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 256/629 (41%), Positives = 423/629 (68%), Gaps = 46/629 (7%)

Query  1    MNRYPAWKYalivvvlliaalYTLPNFFGEAPAvqvssskstvkvdtttLARVEQALKEA  60
            +N+YP WKY LI+ VL+++ +Y+ PN++ + +A+Q+S++ ++++V  + + R  +AL +A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   NISADGITLEAGSIKA--RFGDVDTQGKAKDAIQKALTPDAADPAYVVALNLLSRSPAWL  118
             I+  + +L   +  +  R++  + Q  AKD ++KAL  D     YVVALNL   +P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD-----YVVALNLARTTPNWL  116

Query  119  TSLNANPMYLGLDLRGGVHFMLQVDMQAALTKRAESLAGDIRLSLREKNIRHGGIARNGQ  178
             ++ A PM LGLDL GGVHF+L+VDM+ A+  R     G+++  LR  ++R  ++++ G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  AIEIRFRDSATLTSAKNLIQDQIPDLQMVEAPDGTDYKLTATIKPEAARRIQDQALKQNM  238
             I++ F D A    A+ L++  + D+++  A       L  ++ P     I++ ++KQN+
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNL  236

Query  239  VTLHNRINELGVAEPVIQQQGIDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDsaear  298
             T++NR+NELGVAEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE RL  ++ +++
Sbjct  237  TTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSK  296

Query  299  aaesgsgPVPFGSERFFE-RNG--QAVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTV  355
                       G+   FE R+G   A  V + +I+TG+++TDA+++FD + + P+V++ +
Sbjct  297  -----------GTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINL  344

Query  356  DAKGGRIMRDTSRENLKKRMAILLFE------------------------KGKGEVLTAP  391
            D+ GG +M  ++R N+ + MA++++E                        K    +++ +
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  392  VIQGELGNRFQISGSMSVNEasdlalllragslaaPMDIIEERTIGPTLGAENITKGFHS  451
             IQ+ LG++F+I+G  +  E+S+LALLLRAG+LAAPM + EERTIGP+LGA+NITKG ++
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  452  VSWGFAVIVAFMATYYMLFGLFSGIalavnllllvavlSMLQatltlpgmaamalalgma  511
              WG   +  F+ + Y +FGL++ +ALA N+++L+A++S+L ATLTLPG+A++ L++GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  512  IDSNVLINERIREELRNGASPQAAIHAGYERAWATILDSNISTLIAGLALLAFGSGPVRG  571
            +D+NVLI  RIREE+ NG + Q AI  G++RA ++ILD+N++TL+ G  L+A G+GPV+G
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  572  FAVVHCIGILTSMFSAVFFSRGLVNLWYG  600
            FAV   +GI+TSMF+A+  +R++VNL YG
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNLIYG  613

625) Rta_36970 in NC_015677


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  297 bits (1112),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 250/616 (41%), Positives = 417/616 (68%), Gaps = 44/616 (7%)

Query  1    MIALLVGIVYTLPNFFGEAPAVQVSSAKATVKVDATTLARVEQALSAAGIQPESTTL--D  58
            +  L+VG++Y+ PN++ + +A+Q+S+A ++++V  + + R  +AL+ AGI   +++L  +
Sbjct  14   LAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDAGIPVKASSLAEN  73

Query  59   ASSVKVRLDSTDTQLRARDALQKalvpdpadppyvvalNLLSASPRWLSALGAAPMYLGL  118
            + +  +RL   + QL A+D ++KAL  D   +      NL  ++P WL  +GA+PM LGL
Sbjct  74   GKGGLLRLSKQEDQLPAKDVVRKALGDDYVVAL-----NLARTTPNWLRNVGATPMKLGL  128

Query  119  DLRGGVHFMLQVDMQGALTKKAESFAGDLRTQLREANIRHAGISRDGQAVQVRFRDGQSM  178
            DL GGVHF+L+VDM+ A+  +   + G++++ LR  ++R  ++++ G+ +Q+ F D+   
Sbjct  129  DLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQLGFGDDAER  188

Query  179  EAARRVVADQFPDLQVAESTAGTDYLLTATIRPEAARRVQEQALKQNILTLHNRINELGV  238
            E AR +V   F D++++ +      +L  ++ P     ++E ++KQN+ T++NR+NELGV
Sbjct  189  EQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGV  248

Query  239  AEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVDESAEARAAELGTGPVPFG  298
            AEP++Q+QG +RIVV+LPGVQDTA AK ILG+TA LE RL   + +++++          
Sbjct  249  AEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGT----------  298

Query  299  SERFLERDG-RPVI-VKKQVILTGDSLTDAQPGFDSQTQQPKVDLTVDAKGGRIMRDTSR  356
            +E F  R+G RP   V + +I+TGD +TDA+++FD + + P+V++ +D+ GG +M  ++R
Sbjct  299  TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGR-PQVNINLDGHGGELMSRATR  357

Query  357  ENVGKRMAILLFE------------------------KGRGEVLTAPVIQSELGNRFQIS  392
             NVG+ MA++++E                        K    +++ + IQS LG++F+I+
Sbjct  358  SNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRIT  417

Query  393  GSMTVNEANDlalllragslaaPMEIIEELTIGPTLGAENIAKGFHSVAWGFAAIVAFMA  452
            G     E+++LALLLRAG+LAAPM + EE TIGP+LGA+NI+KG ++  WG   +  F+ 
Sbjct  418  GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIM  477

Query  453  VYYalfglfsglalavnllllvailsmlqatltlpgmaamalalgmaIDSNVLINERVRE  512
              Y +FGL++ +ALA N+++L+A++S+L ATLTLPG+A++ L++GMA+D+NVLI  R+RE
Sbjct  478  AIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIRE  537

Query  513  ELRNGVSPQAAIHAGYDRAWATILDSNITTLIAGVALLAFGSGPVRGFAVVHVIGILTSM  572
            E+ NG++ Q AI  G+DRA ++ILD+N+TTL+ G  L+A G+GPV+GFAV   +GI+TSM
Sbjct  538  EIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSM  597

Query  573  FSAVFFSRGLVNLWYG  588
            F+A+  +R++VNL YG
Sbjct  598  FTAIMVTRAMVNLIYG  613

626) secD in NC_011184


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  297 bits (1114),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 255/620 (42%), Positives = 425/620 (69%), Gaps = 39/620 (6%)

Query  10   LNHYSKWKYivlittlvilllSAIPTWYGEDAAVQITNKDGHI----PSVVSLQNTLTEQ  65
            LN Y+ WKY+++++ LV+ ++ + P  Y +D+A+QI+     +    + V    ++LT+ 
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  66   GINVK--RIEQKGDKTIVILKDEAQQVAAKDVLGSVIDESQKGTTlalslapaapawlQN  123
            GI VK   + ++G   ++ L  + +Q++AKDV+   +++      +AL+LA ++P WL+N
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDD---YVVALNLARTTPNWLRN  118

Query  124  MGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELADSLKQELREERIRSVRFQKEGSDS  183
            +G  P+KLGLDL GGV+FLL+VD+++  +A+ +   + +K  LR E++R   + + G+  
Sbjct  119  VGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN--  176

Query  184  LIVRLP--SEEASHATRQFIHKNYPTWQVTNGDDFD---LKLTLKEDEKIAVRNLTVQQN  238
             +++L    +   + +R +++K +   ++T ++  +   L+++L       +R+ +++QN
Sbjct  177  -VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  239  LQTMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFY--AVKEQG  296
            L T+R+R++ELG++E+LVQRQG NRI +ELPGVQD A AK ++G TA+L F   A  +++
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  297  TGSTMVIP-DQNGQPVR-VGRKPVLTGDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEF  354
             G+T ++   + G+P   V R  ++TGD++ DA+AS++E G ++VNI LD+ GG +MS  
Sbjct  296  KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRA  355

Query  355  SRHNVGKPMATSYNE------YSRDSAGNTE---------QSNQIISVATIQSQLGSRFR  399
            +R NVG++MA  + E      Y+R+     E         + ++IIS+ATIQS LGS+FR
Sbjct  356  TRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFR  415

Query  400  ITGSGslqesqelalllraGSLTAPVTIVEERTIGPTLGAENIQNgfaalg-lglgltll  458
            ITG  +  ES ELALLLRAG+L+AP+ + EERTIGP+LGA+NI +G  A     L ++L+
Sbjct  416  ITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLF  475

Query  459  fMAVWYRRLGWVANIALIGNMVMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFE  518
            +MA+ YR +G +A +AL  NMVML++L++L+ GA LTLPGIAG+VLT+GMAVD+NVLIF 
Sbjct  476  IMAI-YRFFGLIATVALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFS  533

Query  519  RIKDKQKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLYTIGNGPIQGFAltlglgl  578
            RI++   +G T+ +AI  GF  A+ +I+DAN+TT++ + +L+++G GP++GFA+T++LG+
Sbjct  534  RIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGI  593

Query  579  ltSMFTGIFASRAIINLVWG  598
            +TSMFT+I  +RA++NL+ G
Sbjct  594  FTSMFTAIMVTRAMVNLIYG  613

627) secD in NC_007908


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  297 bits (1114),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 254/628 (41%), Positives = 417/628 (67%), Gaps = 43/628 (6%)

Query  1    MNRYPVWKYviilialvvgvvYTLPNFFGEAPavqvsavkvgvkvdssTKVQVEAVLQTA  60
            +N+YP+WKYV+IL  LVVG +Y+ PN++ + +A+Q+S+   +++V  +   +    L  A
Sbjct  2    LNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTDA  61

Query  61   GLAADVVTL--DGNSVKARFGNTETQLKAKDAIQKALIPDPANPNYIVALNLLSRSPTWL  118
            G++    +L  +G++   R+++ E QL AKD ++KAL       +Y+VALNL   +P WL
Sbjct  62   GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL-----GDDYVVALNLARTTPNWL  116

Query  119  TALRAFPMYLGLDLRGGVHFMLQVDMQAALTKKAESLTGDIRTSLREKNVRHSGINRNGQ  178
              + A PM LGLDL GGVHF+L+VDM+ A+  +     G++++ LR  +VR  ++ + G+
Sbjct  117  RNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGN  176

Query  179  TIEVRFRDAQTLEAAKEILLDQFADLQ-SVDALDGTDYKLTASIKPVAALRVQTQALKQN  237
             I++ F D    E A+ ++   F+D++ +   L+G    L  ++ P     ++  ++KQN
Sbjct  177  VIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIP-VLRMALTPAKLAEIREYSIKQN  235

Query  238  ITTLHNRINELGVSEPVIQQQGLDRIVVELPGVQDTAKAKDILGRTATLEVRMVDESSEA  297
            +TT++NR+NELGV+EP++Q+QG +RIVVELPGVQDTA AK ILG+TA LE R+   + ++
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS  295

Query  298  RAAEGGTAAVPFGSERFLERSGQPVIVKKQVILTGENLTDAQPGFDSQTQEAVVNLTLDA  357
            +    GT+ + F    F E +  +  V + +I+TG+++TDA+++FD + +   VN+ LD+
Sbjct  296  K----GTTEM-FE---FREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQ-VNINLDG  346

Query  358  KGARIFRDVTRESVGKRMAILLFE------------------------KGKGEVVTAPVI  393
             G+ +    TR +VG+ MA++++E                        K    +++ + I
Sbjct  347  HGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATI  406

Query  394  RSEIGGGRVQISGRMTAMEATDTALLLRAGSLAAPMEIIEETTIGPSLGAENIAKGFNSV  453
            +S + G++ +I+G     E+++ ALLLRAG+LAAPM + EE TIGPSLGA+NI+KG ++ 
Sbjct  407  QSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAS  465

Query  454  TYGFAAVTVFMCVYYVLFGLFssislavnllllvavlsmlqaTLTLPGMAAMALVIGMAI  513
              G   V++F+   Y +FGL+++++LA N+++L+A++S+L ATLTLPG+A++ L +GMA+
Sbjct  466  LWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMAV  525

Query  514  DANVLINERVREELRNGASAQAAIHAGYDRAWATILDSNVTTLIVGLALLTFGSGPVRGF  573
            DANVLI  R+REE+ NG + Q AI  G+DRA ++ILD+N+TTL+VG  L++ G+GPV+GF
Sbjct  526  DANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGF  585

Query  574  AVVHVLGILTSMFSGVFFSRGLVNLWYG  601
            AV   LGI+TSMF+++  +R++VNL YG
Sbjct  586  AVTMSLGIFTSMFTAIMVTRAMVNLIYG  613

628) secD in NC_009446


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  278 bits (1042),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 251/626 (41%), Positives = 395/626 (64%), Gaps = 33/626 (5%)

Query  1    MPKPFTPWKYalivmvlllgllfalPNWYGKSPAVQMRFTATPAE--QNTVDRIASLLSA  58
            M + +  WKY LI+ VL++G++++ PN Y   +A+Q+  ++T+ +  Q  VDR A  L+ 
Sbjct  1    MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVTQADVDRAAKALTD  60

Query  59   EKIPYKNIVRSAENIDILF--AQTDEQIEAKDVLAKHYPDA-EISVNLLANTPRWMQALG  115
              IP K    + +  + L+  ++ ++Q+ AKDV+ K   D   +++NL   TP W++ +G
Sbjct  61   AGIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVG  120

Query  116  LDPANLGLDLRGGVSFLLQVDSKELLERRSAELLDTLRATLQEKSLPHIRLENADNGGAL  175
              P +LGLDL GGV FLL+VD    ++ R     + ++A L+   +    L + +N   L
Sbjct  121  ATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLPQLGNVIQL  180

Query  176  VWFQSQEERANALETLYSRLPKGVQQFD---AERDGQFGLRFVYSEEAINAAKRRAADQN  232
              F  + ER +A  +L   + K   +F+   AE +G   LR   +   +   +  +  QN
Sbjct  181  G-FGDDAEREQA-RAL---VRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQN  235

Query  233  RMRMASRVNSLGVAEPSVQVVGNDRILIQLPGIQDVSKAKEILGSTATLEFYMVDDKATP  292
               + +RVN LGVAEP VQ  G +RI+++LPG+QD + AK ILG TA LEF +    A P
Sbjct  236  LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---GAGP  292

Query  293  ADIANAVRLKRPPFGDKLGFFEDGTPIL-LKRRVVMSGDHIIDASAVYG-QGQPQVNVVL  350
             D   +         + + F E+G P   + R ++++GD++ DA A ++ +G+PQVN+ L
Sbjct  293  DDSKGTT--------EMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  351  DSAGGATMSEITRNNIGKPMATMYVEYLPVEK--TDAAGETQTDV-----EKRETVANSA  403
            D+ GG  MS  TR+N+G++MA +++E  P      +     + DV          + + A
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  404  TIQGQFSSNFQITGVTPFERAQKLAATLRAGSLIAPVYIIEERTIGPSAGQQNIDQGVHA  463
            TIQ+ ++S+F+ITG+     +  LA  LRAG+L AP+Y+ EERTIGPS G +NI +GV+A
Sbjct  405  TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDA  464

Query  464  SLLGLFAIAVFMLVYYNKLGFYSVIALTFNlilliasisllGATLTLPGIAGIVLTLGMA  523
            SL G++ +++F++  Y  +G+ + +AL+FN+++L+A +SLLGATLTLPGIAGIVLT+GMA
Sbjct  465  SLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGMA  524

Query  524  VDANVLIYERIREELAADRPIKESIRMGFNGALSSIVDANITTLIVGVLLFIFGAGPIKG  583
            VDANVLI+ RIREE+A +  ++ +I  GF+ A ++I+DAN+TTL+VG +LF  G+GP+KG
Sbjct  525  VDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKG  584

Query  584  FAVTLSVGIMTSMFTAVYVTRALTEF  609
            FAVT+S+GI TSMFTA+ VTRA+ ++
Sbjct  585  FAVTMSLGIFTSMFTAIMVTRAMVNL  610

629) secD in NC_008228


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 221/543 (41%), Positives = 350/543 (65%), Gaps = 43/543 (7%)

Query  83   GDDEALLVAQSQLKTTLGDDFQVRLGSQSAAPKWLQGMGMSPIKLGLDLSGGVLFVLEVD  142
            + +E  L A+  ++ +LGDD+ V L    ++P+WL+ +G +P+KLGLDLSGGV F+LEVD
Sbjct  82   SKQEDQLPAKDVVRKALGDDYVVALNLARTTPNWLRNVGATPMKLGLDLSGGVHFLLEVD  141

Query  143  THKADQERLGNAKDEALQLIHDKGLRGMSVKLADSQEKINLHFLTHQASQ-----VKKVV  197
             +KA + RL    +E   L++   +R  S  L++  + I+L F  +   +     V+K  
Sbjct  142  MDKAIDARLKVYEGEVKALLRKEKVRYRS--LPQLGNVIQLGFGDDAEREQARALVRKTF  199

Query  198  NELQ---QQLPGITYTASGDRDAALVFSDQSVTTFHHEIMAQALTTLRGRIEELGITEAV  254
             +++    +L GI           + ++   ++ +++  + Q LTT+R R++ELG++E++
Sbjct  200  TDFEITPAELNGIP-------VLRMALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPL  252

Query  255  TQRQGQNRIRIELPGVKDPEQAKRIIGATASLDFYEMAQSGTVGAKTFTD-----ENGRR  309
             QRQG NRI +ELPGV+D  +AKRI+G TA+L+F     +G  ++K  T+     E GR 
Sbjct  253  VQRQGANRIVVELPGVQDTAEAKRILGKTANLEF--RLGAGPDDSKGTTEMFEFREGGRP  310

Query  310  LRLAPKP-IFTGSNIENATSGRDEMGIALVNLALDGIGGKKMSDFSKDNIGNPMVTIFSE  368
                 +  I+TG ++ +A ++ DE G + VN+ LDG GG  MS  ++ N+G +M  IF E
Sbjct  311  AAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIE  370

Query  369  ------YHKNSADEMVKS---------SKVISVATIQSQLGNRFSITNLDSPQAASDLAL  413
                  Y ++  + + K           K+IS+ATIQS LG++F IT L++   +S+LAL
Sbjct  371  QRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELAL  430

Query  414  LLRAGSLDAPITIVQQRTIQASLGQENVGNGIMALAIGLGFTLVF-MGLWYRKLGLIANT  472
            LLRAG+L AP+ + ++RTI +SLG +N+ +G+ A   G+ F  +F M++ YR +GLIA  
Sbjct  431  LLRAGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAI-YRFFGLIATV  489

Query  473  SLILNLVCLLGLMALLPNVVLTLPGIAGLVLTVGMAVDTNVLIFERIKEERKRGRSNFLA  532
            +L +N+V LL+LM+LL    LTLPGIAG+VLT+GMAVD+NVLIF RI+EE   G +   A
Sbjct  490  ALAFNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRA  548

Query  533  IETGYKEAFATILDANVTTMITALILLSIGYGPVKGFAMTLSLGILTSMFTGVFVAHVLT  592
            I  G+  A+++ILDAN+TT++ + IL+++G GPVKGFA+T+SLGI+TSMFT++ V++ + 
Sbjct  549  ISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMV  608

Query  593  SLV  595
            +L+
Sbjct  609  NLI  611

630) secD in NC_011420


> AY597278|1|G1|51103033|AAT96179.1|Pseudomonas_viridiflava_PNA3.3a|-|341..2209|secD|-|SecD
Length=622

 Score =  258 bits (963),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 213/505 (43%), Positives = 326/505 (65%), Gaps = 46/505 (9%)

Query  41   PGWLP---TKTVNLGLDLQGGSHLLLEVKVDVVVQERLNALQDGARAALRDARIGYTDLG  97
            P WL    +  ++LGLDL GG H+LLEV +D  ++ RL+  ++  +A LR  ++ Y  L 
Sbjct  113  PNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSLP  172

Query  98   VVGNGIAFTLRDPADLETARSAVRNVESDLSIRTDEGNRIVA---SLTDSTVQGLRRAAV  154
             +GN I + + D A+ E AR+ VR+  +D+ I   E N I     +LT + +  +R  ++
Sbjct  173  QLGNVIQLGFGDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALTPAKLAEIREYSI  232

Query  155  EQSIEIVRRRIDETGTREPTIQRQGEDRILVQLPGVDDPERVKRLLGQTAKLTFRLVDDD  214
             Q++  VR R++E G  EP +QRQG +RI+V+LPGV+D    KR+LG+TA+L FRL   +
Sbjct  233  KQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL---G  289

Query  215  ISPADAQAGRIPPGSELLPSRDGG--VEVVRKRVMVDGSTLVDSQPSFQD-GQPVVSFRF  271
             +P D+++      +E++  R+GG     V + +++ G  + D+++SF++ G+P V++ +
Sbjct  290  AGPDDSKGT-----TEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINL  344

Query  272  DSLGARRFGEATSANVEKRFAIVL----------------------------DNQVISAP  303
            D+ G+   + AT +NV +  A+++                            D+++IS +
Sbjct  345  DGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKIISLA  404

Query  304  RIQEPILGGSGIIRGSFTVETANDlslllragalpaplTVLEERTVGPGLGADSIEAGRI  363
             IQ P LG+   I G      +++L+LLLRAG+L+AP+   EERT+GP+LGAD+I  G  
Sbjct  405  TIQSP-LGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD  463

Query  364  ASIAGLVMVVAFMALCYGLFGLFANLALVFNIALIFAALSILQATLTLPGIAGIVLTIGM  423
            AS+ G++ V  F+   Y +FGL+A +AL FN+ +++A +S+L ATLTLPGIAGIVLT+GM
Sbjct  464  ASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTMGM  523

Query  424  AVDANVLIFERIREELRFGRTPIAAIDAGYNRALTTIIDSNLTTLIAALLLFMFGSGPVK  483
            AVDANVLIF RIREE+  G T   AI  G++RA T+I+D+NLTTL+ + +LF  G+GPVK
Sbjct  524  AVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGPVK  583

Query  484  GFAVTLSIGILASMFTAIMVTRLMV  508
            GFAVT+S+GI++SMFTAIMVTR MV
Sbjct  584  GFAVTMSLGIFTSMFTAIMVTRAMV  608