Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of pipD gene of NC_006905_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) pipD
( YP_216031.1 )

pathogenicity island encoded protein: SPI3

NC_006905
(Salmonella enterica SC-B67)

1e-155

100

2) NT01EI_1980
( YP_002933391.1 )

peptidase, family C69

NC_012779
(Edwardsiella ictaluri 93-146)

2e-67

• Sequence Alignments

1) pipD in NC_006905


> NC_006905_P1|10|G6|62179614|YP_216031.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|4685..5689|pipD|SC1044|pathogenicity 
island encoded protein: SPI3
Length=334

 Score =  542 bits (2044),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 334/334 (100%), Positives = 334/334 (100%), Gaps = 0/334 (0%)

Query  1    MPAKNIAGSITFSVSNPGSIHPITRYSVGTFMKKYLAFAVTLLGMGKVIACTTLLVGNQA  60
            MPAKNIAGSITFSVSNPGSIHPITRYSVGTFMKKYLAFAVTLLGMGKVIACTTLLVGNQA
Sbjct  1    MPAKNIAGSITFSVSNPGSIHPITRYSVGTFMKKYLAFAVTLLGMGKVIACTTLLVGNQA  60

Query  61   SADGSFIIARNEDGSANNAKHKVIHPVAFHQQGEYKAHRNNFSWPLPETAMRYTAIHDFD  120
            SADGSFIIARNEDGSANNAKHKVIHPVAFHQQGEYKAHRNNFSWPLPETAMRYTAIHDFD
Sbjct  61   SADGSFIIARNEDGSANNAKHKVIHPVAFHQQGEYKAHRNNFSWPLPETAMRYTAIHDFD  120

Query  121  TNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQ  180
            TNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQ
Sbjct  121  TNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQ  180

Query  181  GAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRH  240
            GAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRH
Sbjct  181  GAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRH  240

Query  241  YDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDITYNYPRVWTLQHQF  300
            YDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDITYNYPRVWTLQHQF
Sbjct  241  YDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDITYNYPRVWTLQHQF  300

Query  301  NPHLDTVVSEGETFPVFLTPITKISVAAVKRTFF  334
            NPHLDTVVSEGETFPVFLTPITKISVAAVKRTFF
Sbjct  301  NPHLDTVVSEGETFPVFLTPITKISVAAVKRTFF  334

2) NT01EI_1980 in NC_012779


> NC_006905_P1|10|G6|62179614|YP_216031.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|4685..5689|pipD|SC1044|pathogenicity 
island encoded protein: SPI3
Length=334

 Score =  249 bits (930),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 146/290 (51%), Positives = 211/290 (73%), Gaps = 6/290 (2%)

Query  20   SCTTILIGAAATRDGSRIIARTEDHDPLLSKVLLKHPPQADQRGRFHANENAFSWPLPAT  79
            +CTT+L+G  A+ DGS IIAR ED  +  +K  + HP   +Q+G + A+ N FSWPLP T
Sbjct  50   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQQGEYKAHRNNFSWPLPET  109

Query  80   AQGYSAFANGKSGKTAAQMTWGAAGFNQRGVGMSATETIFASEQALLHDPYLSESGITED  139
            A  Y+A+ +  +   A     G AGFN  GVGMSATETI+ +  AL  DPY++ +GITED
Sbjct  110  AMRYTAIHDFDTNDNAM----GEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITED  165

Query  140  SIVDIVLPYIDSAREGVSRLGKMIEEQGAGEGFGVAFIDPDEIWYLETGSAHQWLAAKLA  199
            +I  ++LP  +SAR+G   LG +IE++GAGEGFGVAFID+ EIWYLETGS+HQWLA +L+
Sbjct  166  AIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLP  225

Query  200  PHCYFVTGNQGRLRDYNPDDRDDYMASASLIDFALQHGLYDPQRDGQFNFERAYTRHDDR  259
            ++ YFV++NQGRLR+Y+P+D  +YMAS++L+ FA ++GLYDP R G+F+F++AY+ +D++
Sbjct  226  ADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-GEFDFHQAYS-QDNK  283

Query  260  LDGYYNYPRVYALQQLYRPDPDRTLQQPQRFAVFEAPSDALDVESVKRGL  309
             D  YNYPRV +LQ+ + P+ D  + + + F+VF +P   + V +VKR +
Sbjct  284  NDITYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKRTF  333