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PAthogenisity Island DataBase (PAI DB)

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Homologs of RL103 gene of AY273869

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) PA14_59060
( YP_792903.1 )

hypothetical protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

1e-32

100

2) PADK2_23730
( YP_006484711.1 )

DNA binding protein

NC_018080
(Pseudomonas aeruginosa DK2)

3e-29

3) G655_23410
( YP_007711520.1 )

putative DNA binding protein

NC_020912
(Pseudomonas aeruginosa B136-33)

5e-22

4) M062_05300
( YP_008131509.1 )

DNA-binding protein

NC_021577
(Pseudomonas aeruginosa RP73)

5e-22

5) PSPA7_4453
( YP_001349803.1 )

putative DNA binding protein

NC_009656
(Pseudomonas aeruginosa PA7)

1e-18

• Sequence Alignments

1) PA14_59060 in NC_008463


> AY273869|117|G101|32481714|AAP84228.1|Pseudomonas_aeruginosa_PA14|-|99797..100051|-|RL103|hypothetical 
protein
Length=84

 Score =  132 bits (484),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  1   MTMARETEDKFVVRMPLGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVD  60
           MTMARETEDKFVVRMPLGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVD
Sbjct  1   MTMARETEDKFVVRMPLGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVD  60

Query  61  ELFAKNQRLQAELAAANTPQVAEA  84
           ELFAKNQRLQAELAAANTPQVAEA
Sbjct  61  ELFAKNQRLQAELAAANTPQVAEA  84

2) PADK2_23730 in NC_018080


> AY273869|117|G101|32481714|AAP84228.1|Pseudomonas_aeruginosa_PA14|-|99797..100051|-|RL103|hypothetical 
protein
Length=84

 Score =  121 bits (441),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 76/80 (95%), Positives = 79/80 (99%), Gaps = 0/80 (0%)

Query  10  KHAEDKFVVRMPQGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVDELFA  69
           +++EDKFVVRMP GLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVDELFA
Sbjct  5   RETEDKFVVRMPLGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVDELFA  64

Query  70  KNQRLQAELAAANTPQVAEA  89
           KNQRLQAELAAANTPQVAEA
Sbjct  65  KNQRLQAELAAANTPQVAEA  84

3) G655_23410 in NC_020912


> AY273869|117|G101|32481714|AAP84228.1|Pseudomonas_aeruginosa_PA14|-|99797..100051|-|RL103|hypothetical 
protein
Length=84

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 80/82 (98%), Positives = 81/82 (99%), Gaps = 0/82 (0%)

Query  1   MARETEDKFVVRMPLGLRDQLKQKAAHNHRSANSEIVYrlersneleeelaranrMVDEL  60
           MARETEDKFVVRMPLGLRDQLKQKAA+NHRSANSEIVYRLERSN LEEELARANRMVDEL
Sbjct  3   MARETEDKFVVRMPLGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVDEL  62

Query  61  FAKNQRLQAELAAANTPQVAEA  82
           FAKNQRLQAELAAANTPQVAEA
Sbjct  63  FAKNQRLQAELAAANTPQVAEA  84

4) M062_05300 in NC_021577


> AY273869|117|G101|32481714|AAP84228.1|Pseudomonas_aeruginosa_PA14|-|99797..100051|-|RL103|hypothetical 
protein
Length=84

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 80/82 (98%), Positives = 81/82 (99%), Gaps = 0/82 (0%)

Query  1   MARETEDKFVVRMPLGLRDQLKQKAAHNHRSANSEIVYrlersneleeelaranrMVDEL  60
           MARETEDKFVVRMPLGLRDQLKQKAA+NHRSANSEIVYRLERSN LEEELARANRMVDEL
Sbjct  3   MARETEDKFVVRMPLGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVDEL  62

Query  61  FAKNQRLQAELAAANTPQVAEA  82
           FAKNQRLQAELAAANTPQVAEA
Sbjct  63  FAKNQRLQAELAAANTPQVAEA  84

5) PSPA7_4453 in NC_009656


> AY273869|117|G101|32481714|AAP84228.1|Pseudomonas_aeruginosa_PA14|-|99797..100051|-|RL103|hypothetical 
protein
Length=84

 Score = 86.0 bits (307),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 72/80 (90%), Positives = 78/80 (98%), Gaps = 0/80 (0%)

Query  10  KHAEDKFVVRMPQGLRDQLKQKAAHNHRSANSEIVYrlersneleeelaranrMVDELLA  69
           +++EDKFVVRMP GLRDQLKQKAA+NHRSANSEIVYRLERSN LEEELARANRMVDEL+A
Sbjct  5   RETEDKFVVRMPLGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVDELFA  64

Query  70  KNQRLQAELAAANAPQVAEA  89
           KNQRLQAELAAAN+PQVAEA
Sbjct  65  KNQRLQAELAAANTPQVAEA  84