Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of S3185 gene of NC_004741_P1

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EC042_4520
( - )

NC_017626
(Escherichia coli 042)

e-146

94.2

2) ROD_49851
( - )

NC_013716
(Citrobacter rodentium ICC168)

e-135

91.4

• Sequence Alignments

1) EC042_4520 in NC_017626


>NC_004741_P1|12|G10|30064297|NP_838468.1|Shigella_flexneri_2a_str._2457T|-|23323..23748|-|S3185|hypothetical 
          Length = 426

 Score = 514 bits (1327), Expect = e-146
 Identities = 276/293 (94%)
 Strand = Plus / Plus

Query: 1   atgaacggtataaaaacggggctggg-atcacgccgggtgagcacattatcagtgccgat 59
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 1   atgaacggtataaaaacggggctggggatcacgccgggtgagcacattatcagtgccgac 60

Query: 60  tctgcgctcagcagaaatatccggcattgtttctgtctttcctgtcgtggccggttgatt 119
           |||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||
Sbjct: 61  tctgcgctcagcagaaatatccggcagtgtttctgcctttcctgccatggccggttgatt 120

Query: 120 ttgcagacagatgctcagggggcgtggtttgagcacgatttacatgccctgagcgcgcaa 179
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct: 121 ctgcagacagatgctcagggggcgtggtttgagcatgatttacatgccctgagtgagcaa 180

Query: 180 cagaaggcggcctgcgtggtgctgaatccggaaaaatcccatccttacattgatgatatg 239
           |||||||||| ||| ||||||||||||||||| || ||||| ||||||||||| ||||||
Sbjct: 181 cagaaggcggactgtgtggtgctgaatccggagaagtcccacccttacattgaggatatg 240

Query: 240 gcgatgtttttatcgccattacctgtcgtgctggagtggcattgtgtgatgtg 292
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 gcgatgtttttatcgccattaccggtcgtgctggagtggcattgtgtgatgtg 293


 Score = 143 bits (370), Expect = 2e-34
 Identities = 77/83 (93%)
 Strand = Plus / Plus

Query: 309 gggaaaaagttctgtgaagcctgtggcacggggatttattgcagagcggcatgtacgaag 368
           ||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 310 gggaagaagttctgtgaggcctgtggtacggggatttattgcagagcggtatgtacgaag 369

Query: 369 tatgtttacagataccagccaga 391
           | ||||||||| |||||||||||
Sbjct: 370 tctgtttacagctaccagccaga 392


 Score = 11 bits (29), Expect = 1e+06
 Identities = 6/6 (100%)
 Strand = Plus / Plus

Query: 302 tttttc 307
           ||||||
Sbjct: 302 tttttc 307

2) ROD_49851 in NC_013716


>NC_004741_P1|12|G10|30064297|NP_838468.1|Shigella_flexneri_2a_str._2457T|-|23323..23748|-|S3185|hypothetical 
          Length = 426

 Score = 477 bits (1231), Expect = e-135
 Identities = 257/281 (91%)
 Strand = Plus / Plus

Query: 111 cggttgattttgcagacagatgctcagggggcgtggtttgagcacgatttacatgccctg 170
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112 cggttgattctgcagacagatgctcagggggcgtggtttgagcatgatttacatgccctg 171

Query: 171 accgtgcaacagaaggtggcctgcgtggtgctgaatccggaaaaaccccatccttacatt 230
           |  | ||||||||||| || ||| ||||||||||||||||| ||  |||| |||||||||
Sbjct: 172 agtgagcaacagaaggcggactgtgtggtgctgaatccggagaagtcccacccttacatt 231

Query: 231 gaggatatggcgatgtttttatcgccattaccaaccgtgctggagtggcattgtgtgatg 290
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 232 gaggatatggcgatgtttttatcgccattaccggtcgtgctggagtggcattgtgtgatg 291

Query: 291 tgcgagaggctttttcatgggaagaagttctgtgaggcctgtggtacggggatttattgc 350
           || |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgtgagcagttttttcatgggaagaagttctgtgaggcctgtggtacggggatttattgc 351

Query: 351 agagcaacatgtacgaagtatgtttacaggtaccagccaga 391
           |||||   ||||||||||| ||||||||| |||||||||||
Sbjct: 352 agagcggtatgtacgaagtctgtttacagctaccagccaga 392


 Score = 168 bits (434), Expect = 7e-42
 Identities = 95/104 (91%)
 Strand = Plus / Plus

Query: 1   atgaacggtctaaaaacggggctggggatcacgccgggtgagcacattatcagtgcggcc 60
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1   atgaacggtataaaaacggggctggggatcacgccgggtgagcacattatcagtgccgac 60

Query: 61  tcagcccttagcagaaatatcaggcattgtttctgtctttcctg 104
           || || || |||||||||||| |||| |||||||| ||||||||
Sbjct: 61  tctgcgctcagcagaaatatccggcagtgtttctgcctttcctg 104