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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrcQb gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HrcQb
( YP_234301.1 )

type III secretion protein HrcQb

NC_007005
(Pseudomonas syringae B728a)

4e-44

2) hrcQb
( YP_273545.1 )

type III secretion component protein HrcQb

NC_005773
(Pseudomonas syringae 1448A)

5e-33

3) hrcQb
( NP_791223.1 )

type III secretion protein HrcQb

NC_004578
(Pseudomonas syringae DC3000)

3e-20

4) Pmen_0045
( YP_001185551.1 )

surface presentation of antigens (SPOA) protein

NC_009439
(Pseudomonas mendocina ymp)

1e-15

• Sequence Alignments

1) HrcQb in NC_007005


> EF514224|15|G12|148562539|ABQ88358.1|Pseudomonas_syringae_pv._syringae_61|+|12904..13305|hrcQb|-|HrcQb
Length=133

 Score =  170 bits (629),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 123/133 (93%), Positives = 129/133 (97%), Gaps = 1/133 (0%)

Query  1    MSTEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAEQAFGYAD-EPEHEKQSGDHHESPM  59
            MSTEDLYQDDVEMLDDYEEPVPEQADQQ +DDE AE+AFGYAD ++EHE QSGDHHESPM
Sbjct  1    MSTEDLYQDDVEMLDDYEEPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESPM  60

Query  60   LDSLELDLTLRCGelrltlaelrrlDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG  119
            LDSLELDLTLRCG+LRLTLAELRRLDAG+ILEVSGIAPGHATLCHGEQVVAEGELVDVEG
Sbjct  61   LDSLELDLTLRCGDLRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVDVEG  120

Query  120  RLGLQITRLVARS  132
            RLGLQITRLVARS
Sbjct  121  RLGLQITRLVARS  133

2) hrcQb in NC_005773


> EF514224|15|G12|148562539|ABQ88358.1|Pseudomonas_syringae_pv._syringae_61|+|12904..13305|hrcQb|-|HrcQb
Length=133

 Score =  133 bits (489),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 93/133 (70%), Positives = 117/133 (88%), Gaps = 5/133 (3%)

Query  1    MSTEDLYQEDVEMLDDYEDP----STEQHWSEEDGEPS-GYATAEPDDHAAQEEQDEPPA  55
            MSTEDLYQ+DVEMLDDYE+P    + +Q++ +E +E + GYA ++++++    +++E+P 
Sbjct  1    MSTEDLYQDDVEMLDDYEEPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESPM  60

Query  56   LDSLALDLTLRCGelrltlaelrrlDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEG  115
            LDSL LDLTLRCG+LRLTLAELRRLDAG+ILEV+GI+PGHATLCHGEQVVAEGELVDVEG
Sbjct  61   LDSLELDLTLRCGDLRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVDVEG  120

Query  116  RLGLQITRLVTRS  128
            RLGLQITRLV+RS
Sbjct  121  RLGLQITRLVARS  133

3) hrcQb in NC_004578


> EF514224|15|G12|148562539|ABQ88358.1|Pseudomonas_syringae_pv._syringae_61|+|12904..13305|hrcQb|-|HrcQb
Length=133

 Score = 91.2 bits (327),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 83/137 (61%), Positives = 114/137 (84%), Gaps = 4/137 (2%)

Query  1    MSTEDLYQDDVESLEDYDDETAeqeheheheqqWaepddeseyaeaepdddeqeeqeeqq  60
            MSTEDLYQDDVE L+DY++  +EQ ++++    + +   E  ++ A++D +++E+  +++
Sbjct  1    MSTEDLYQDDVEMLDDYEEPVPEQADQQQ----RDDEYAEHAFGYADSDAEHEEQSGDHH  56

Query  61   apSGLDSLALDLTLRCGelrltlaelrrlDAGTILEVGGVAPGYATLCHGERVVAEGELV  120
             ++ LDSL LDLTLRCG+LRLTLAELRRLDAG+ILEV+G+APG ATLCHGE+VVAEGELV
Sbjct  57   ESPMLDSLELDLTLRCGDLRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELV  116

Query  121  DVDGRLGLQITRLAAQP  137
            DV+GRLGLQITRL A++
Sbjct  117  DVEGRLGLQITRLVARS  133

4) Pmen_0045 in NC_009439


> EF514224|15|G12|148562539|ABQ88358.1|Pseudomonas_syringae_pv._syringae_61|+|12904..13305|hrcQb|-|HrcQb
Length=133

 Score = 76.3 bits (270),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 58/134 (44%), Positives = 99/134 (74%), Gaps = 6/134 (4%)

Query  1    MSTEHLSQESLQEMAEMDADALPEGFEERPGEMHLEGQEFA---PQDEHASAVEPQQMAA  57
            MSTE+L Q+ ++ + + + +++PE  +++  + +   + F+   ++ EH      ++ ++
Sbjct  1    MSTEDLYQDDVEMLDDYE-EPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESP  59

Query  58   LGSIAHLPLQLTLRCGQLTLSVDQLRQLGSGSVLEIHGVAPGHATLCHgervvgegelvd  117
            +  +  L L+LTLRCG+L L++ +LR+L++GS+LE+ G+APGHATLCHGE+VV+EGELVD
Sbjct  60   M--LDSLELDLTLRCGDLRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVD  117

Query  118  vdgrLGLQITRMAT  131
            V+GRLGLQITR+ +
Sbjct  118  VEGRLGLQITRLVA  131